| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is ydfG [C]
Identifier: 116622730
GI number: 116622730
Start: 4595155
End: 4595883
Strand: Reverse
Name: ydfG [C]
Synonym: Acid_3629
Alternate gene names: 116622730
Gene position: 4595883-4595155 (Counterclockwise)
Preceding gene: 116622731
Following gene: 116622727
Centisome position: 46.12
GC content: 64.2
Gene sequence:
>729_bases ATGGCCCAGCAACTGACGAATCAGGTAGTGGTGGTGGTGGGAGCGTCCAGCGGGATTGGGCGTGAGACGGCGATCGCGTT TGCGCGCGAAGGTGCGCGCGTGATGGCGGCGGCGCGGCGCGAGGAGCGCCTGAGCAGCCTCAAGAACGAGCTTACGGCAG AAGGTCACACCATCGAGATCGCGATCGCGGATGCCTCGAAGGTCGGCGACATGGACCGGCTGATCGCGGACACGCGCAAG AAGCTGGGCGAGATCGACATTCTGGTGTACAACACCGGCACCAACGTCAAGGATCGCTCGTTGAAGCGCCTGACCCCGGC TGTCTGGGACATGATGGTCTCGGTGAACATGAGCGGCGCGTTTTACGCGACTCAGGCGGTGCTGCCTTCGATGCGCGAGC GCAAAGCCGGGCACCTGATTTATGTGGCTTCGATCTCGGGAATCGTGCCCGATATTTCGGGCGCGGCTTACCAGGCAGCC AAGCGCGGAGTGCTGGGCATGGCGCACGCGGTGCGAGTGGAGGAGAAAGAGAACGGCATCCGCACATGCGTGGTATGCCC CGGCCTGGTGGACACGGAGATCCTGGAGAACCGCCCGGTGAAGCCCTCGGCCGAGACACTCGCGATGGCGCTGCAGCCGG CGGATGTGGCGGAAGCGATCCTGGCGGTGGCTAAAATGCCGGCGCGCGTGGCCGTGCCAGAGCTGCAAGTGATGCCGACG TATTTGTAA
Upstream 100 bases:
>100_bases TGGCGGCGCCGGAAGAGATAACAGAGGGTAACCGCGTTGCAGTTGGCAATCAGAGTTGGATCACGGCCAGGTTAGGCAGA GTCGGGCTACAATCGCATGC
Downstream 100 bases:
>100_bases TTCGCTACCGTGCGTGGGTCCGGTATTGGGTGGGGGAGACCCCGACGGCGCGCTTGAAGATGCGGTGGAAGTGGCTGGGC GTAGTGAAACCGGCGGCGGC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MAQQLTNQVVVVVGASSGIGRETAIAFAREGARVMAAARREERLSSLKNELTAEGHTIEIAIADASKVGDMDRLIADTRK KLGEIDILVYNTGTNVKDRSLKRLTPAVWDMMVSVNMSGAFYATQAVLPSMRERKAGHLIYVASISGIVPDISGAAYQAA KRGVLGMAHAVRVEEKENGIRTCVVCPGLVDTEILENRPVKPSAETLAMALQPADVAEAILAVAKMPARVAVPELQVMPT YL
Sequences:
>Translated_242_residues MAQQLTNQVVVVVGASSGIGRETAIAFAREGARVMAAARREERLSSLKNELTAEGHTIEIAIADASKVGDMDRLIADTRK KLGEIDILVYNTGTNVKDRSLKRLTPAVWDMMVSVNMSGAFYATQAVLPSMRERKAGHLIYVASISGIVPDISGAAYQAA KRGVLGMAHAVRVEEKENGIRTCVVCPGLVDTEILENRPVKPSAETLAMALQPADVAEAILAVAKMPARVAVPELQVMPT YL >Mature_241_residues AQQLTNQVVVVVGASSGIGRETAIAFAREGARVMAAARREERLSSLKNELTAEGHTIEIAIADASKVGDMDRLIADTRKK LGEIDILVYNTGTNVKDRSLKRLTPAVWDMMVSVNMSGAFYATQAVLPSMRERKAGHLIYVASISGIVPDISGAAYQAAK RGVLGMAHAVRVEEKENGIRTCVVCPGLVDTEILENRPVKPSAETLAMALQPADVAEAILAVAKMPARVAVPELQVMPTY L
Specific function: Unknown
COG id: COG4221
COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI4504505, Length=224, Percent_Identity=31.25, Blast_Score=101, Evalue=7e-22, Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=30.5263157894737, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI4503817, Length=226, Percent_Identity=30.9734513274336, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=29.4820717131474, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=30, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI5031737, Length=190, Percent_Identity=30, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI7706318, Length=200, Percent_Identity=34.5, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI126723191, Length=177, Percent_Identity=31.0734463276836, Blast_Score=91, Evalue=8e-19, Organism=Homo sapiens, GI20149619, Length=230, Percent_Identity=29.5652173913043, Blast_Score=89, Evalue=2e-18, Organism=Homo sapiens, GI40807363, Length=246, Percent_Identity=26.4227642276423, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI142976729, Length=241, Percent_Identity=26.5560165975104, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI25282469, Length=270, Percent_Identity=27.4074074074074, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI210032110, Length=202, Percent_Identity=27.7227722772277, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI126723750, Length=193, Percent_Identity=26.9430051813472, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI310128830, Length=206, Percent_Identity=26.6990291262136, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI310115468, Length=206, Percent_Identity=26.6990291262136, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI66933014, Length=196, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI40254992, Length=231, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI157739938, Length=230, Percent_Identity=26.9565217391304, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI15277342, Length=242, Percent_Identity=28.5123966942149, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI31542939, Length=203, Percent_Identity=27.5862068965517, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI19923817, Length=199, Percent_Identity=27.1356783919598, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI32455239, Length=202, Percent_Identity=31.1881188118812, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI5031765, Length=202, Percent_Identity=31.1881188118812, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI7657478, Length=194, Percent_Identity=29.8969072164948, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI40254986, Length=188, Percent_Identity=29.7872340425532, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI209862901, Length=245, Percent_Identity=25.7142857142857, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI19923983, Length=245, Percent_Identity=25.7142857142857, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI59889578, Length=171, Percent_Identity=24.5614035087719, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI7705855, Length=207, Percent_Identity=28.9855072463768, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1787820, Length=237, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI87082100, Length=236, Percent_Identity=31.3559322033898, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787335, Length=191, Percent_Identity=29.8429319371728, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1786812, Length=205, Percent_Identity=30.2439024390244, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787526, Length=190, Percent_Identity=30, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1788459, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789378, Length=193, Percent_Identity=28.4974093264249, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786701, Length=196, Percent_Identity=26.530612244898, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87082160, Length=190, Percent_Identity=25.7894736842105, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790717, Length=190, Percent_Identity=25.7894736842105, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1789208, Length=193, Percent_Identity=25.9067357512953, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI2367365, Length=233, Percent_Identity=29.1845493562232, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17564282, Length=198, Percent_Identity=30.3030303030303, Blast_Score=106, Evalue=9e-24, Organism=Caenorhabditis elegans, GI193203117, Length=238, Percent_Identity=28.5714285714286, Blast_Score=93, Evalue=9e-20, Organism=Caenorhabditis elegans, GI193203115, Length=234, Percent_Identity=29.0598290598291, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17559104, Length=244, Percent_Identity=28.6885245901639, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17562910, Length=199, Percent_Identity=30.6532663316583, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17551412, Length=204, Percent_Identity=30.8823529411765, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17508895, Length=200, Percent_Identity=27, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17560150, Length=197, Percent_Identity=29.4416243654822, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17568967, Length=193, Percent_Identity=26.4248704663212, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17538480, Length=204, Percent_Identity=29.4117647058824, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17565030, Length=200, Percent_Identity=32.5, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562908, Length=204, Percent_Identity=30.3921568627451, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562904, Length=198, Percent_Identity=29.7979797979798, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17560676, Length=190, Percent_Identity=25.7894736842105, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17567345, Length=199, Percent_Identity=28.1407035175879, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=27.0491803278689, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560220, Length=243, Percent_Identity=28.3950617283951, Blast_Score=78, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17561402, Length=193, Percent_Identity=27.979274611399, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17538486, Length=196, Percent_Identity=28.0612244897959, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17563726, Length=231, Percent_Identity=26.8398268398268, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560332, Length=196, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI25147288, Length=204, Percent_Identity=28.4313725490196, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17531453, Length=245, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17562906, Length=223, Percent_Identity=29.5964125560538, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17544670, Length=248, Percent_Identity=27.0161290322581, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17562990, Length=197, Percent_Identity=27.4111675126904, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17560176, Length=209, Percent_Identity=27.7511961722488, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71994604, Length=198, Percent_Identity=28.7878787878788, Blast_Score=69, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193204405, Length=211, Percent_Identity=29.8578199052133, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71994600, Length=199, Percent_Identity=28.1407035175879, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17559552, Length=210, Percent_Identity=26.1904761904762, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71997099, Length=212, Percent_Identity=29.2452830188679, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71982365, Length=151, Percent_Identity=27.8145695364238, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI72000259, Length=241, Percent_Identity=23.6514522821577, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=250, Percent_Identity=28.4, Blast_Score=88, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6322861, Length=206, Percent_Identity=28.1553398058252, Blast_Score=85, Evalue=9e-18, Organism=Saccharomyces cerevisiae, GI6322227, Length=198, Percent_Identity=25.7575757575758, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322067, Length=200, Percent_Identity=28, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI18859837, Length=186, Percent_Identity=33.8709677419355, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI116007236, Length=244, Percent_Identity=32.7868852459016, Blast_Score=100, Evalue=6e-22, Organism=Drosophila melanogaster, GI24641232, Length=250, Percent_Identity=32.8, Blast_Score=100, Evalue=7e-22, Organism=Drosophila melanogaster, GI21358495, Length=229, Percent_Identity=30.1310043668122, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI23397609, Length=194, Percent_Identity=35.5670103092784, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI28571387, Length=239, Percent_Identity=32.2175732217573, Blast_Score=94, Evalue=6e-20, Organism=Drosophila melanogaster, GI24639444, Length=228, Percent_Identity=29.8245614035088, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI116007234, Length=251, Percent_Identity=31.4741035856574, Blast_Score=85, Evalue=3e-17, Organism=Drosophila melanogaster, GI24584748, Length=198, Percent_Identity=30.8080808080808, Blast_Score=84, Evalue=6e-17, Organism=Drosophila melanogaster, GI161076933, Length=198, Percent_Identity=30.8080808080808, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI281364494, Length=253, Percent_Identity=28.4584980237154, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21355319, Length=211, Percent_Identity=26.5402843601896, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI24644339, Length=231, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24663911, Length=248, Percent_Identity=30.241935483871, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24648693, Length=250, Percent_Identity=29.2, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI21355889, Length=250, Percent_Identity=29.2, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24641388, Length=258, Percent_Identity=29.8449612403101, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI28571526, Length=231, Percent_Identity=26.8398268398268, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI116007238, Length=213, Percent_Identity=30.0469483568075, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24640492, Length=215, Percent_Identity=26.046511627907, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI21357041, Length=195, Percent_Identity=27.6923076923077, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24649181, Length=198, Percent_Identity=23.2323232323232, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI21355631, Length=252, Percent_Identity=25.7936507936508, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI21357673, Length=201, Percent_Identity=28.3582089552239, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI281364892, Length=225, Percent_Identity=27.1111111111111, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI28574402, Length=215, Percent_Identity=30.6976744186047, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24584744, Length=215, Percent_Identity=30.6976744186047, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI17737361, Length=211, Percent_Identity=27.9620853080569, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI24648944, Length=242, Percent_Identity=29.3388429752066, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24581726, Length=222, Percent_Identity=24.3243243243243, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24640442, Length=205, Percent_Identity=26.8292682926829, Blast_Score=68, Evalue=7e-12,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25895; Mature: 25764
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQQLTNQVVVVVGASSGIGRETAIAFAREGARVMAAARREERLSSLKNELTAEGHTIEI CCCHHCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE AIADASKVGDMDRLIADTRKKLGEIDILVYNTGTNVKDRSLKRLTPAVWDMMVSVNMSGA EEECCHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHEECCCCH FYATQAVLPSMRERKAGHLIYVASISGIVPDISGAAYQAAKRGVLGMAHAVRVEEKENGI HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHEEEECCCCCC RTCVVCPGLVDTEILENRPVKPSAETLAMALQPADVAEAILAVAKMPARVAVPELQVMPT EEEEECCCCCCHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEECCC YL CC >Mature Secondary Structure AQQLTNQVVVVVGASSGIGRETAIAFAREGARVMAAARREERLSSLKNELTAEGHTIEI CCHHCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE AIADASKVGDMDRLIADTRKKLGEIDILVYNTGTNVKDRSLKRLTPAVWDMMVSVNMSGA EEECCHHCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHEECCCCH FYATQAVLPSMRERKAGHLIYVASISGIVPDISGAAYQAAKRGVLGMAHAVRVEEKENGI HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHEEEECCCCCC RTCVVCPGLVDTEILENRPVKPSAETLAMALQPADVAEAILAVAKMPARVAVPELQVMPT EEEEECCCCCCHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEECCC YL CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11418146 [H]