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The map label for this gene is fecI [C]

Identifier: 116622704

GI number: 116622704

Start: 4563283

End: 4564179

Strand: Reverse

Name: fecI [C]

Synonym: Acid_3603

Alternate gene names: 116622704

Gene position: 4564179-4563283 (Counterclockwise)

Preceding gene: 116622705

Following gene: 116622702

Centisome position: 45.8

GC content: 67.56

Gene sequence:

>897_bases
ATGTCGAACCCGGCCGCGAGCTTCGAACCGTATCGCCGGCGCCTGCTCGGTCTCGCATATCGCATGCTTGGCTCGATGGC
CGACGGCGAGGACGCCGTGCAGGAGACCTACCTGCGCTGGCATGCGGCGGACCGCGGCAAAGTGTCGGACCCTCGAGCGT
TTCTTATGACCACCACGGCACGGATTTGTCTCGACATGCTGACCTCGGCGCGAGCCCGCCGCGAGGAGTACGTCGGCCCC
TGGCTGCCGGAGCCGGTGGTGGACACGGCAACGCTCGCCCCCGACAGCCGGACCGAACTGGCCGAGGATCTGTCCATCGC
GCTGCTCTTGACGCTCGACCGCCTGTCGCCGCTGGAGCGCGCCGCGTTCCTGCTCCATGACGTGTTCGATTTTTCATTCA
CCGAAGTTGCCGCAACCCTGGAGCGGAGTGAGGCTGCCTGCCGCCAGCTTGCCGCTCGCGCTCGTTCCCACGTGCGCGAA
ATACGGCCGCGCGGCGCCGTCGCGGCGCCGCCGCGCTCTGCCGAAATCGACGCCAGGCATGAGCAGCTCATGCTCGCCTT
CGTAGCGGCCACGCGCTCAGGCGATCTCAACGCCCTGACCAACCTGCTCGCCGGCGACGTCCGCATCGTGACCGATGGCG
GCGGCAAGGTGGCGGCCGCGCTGAATGTGCTCGAGGGTGCGGACCGCGCCGCCCGCTTCCTGGTTGGCGCCACGCGCAAA
GGCTGGCGCGACGACTTCACGCTGCGCTTTGCGACCATTAACGGCCTGCCCGGGGTCATTCTGGATGGCCCCGAGGGGCC
GGTACAAACTACGGCCTTCCAGATCGAAGACGCCGTAATTCGGGCACTGTATGTGGTGCGCAATCCCGACAAGTTGCGCC
ATCTCTCCGCGGGGTAA

Upstream 100 bases:

>100_bases
TGCGGATCGTCGTGGATGGCACACCCGTGTTGTTCGATCACGGACGATCCTCGACGCCCGCGGATGCAGCGGTGCCCACC
CCGTGAGCGCCGTGGACCCA

Downstream 100 bases:

>100_bases
ATGAACTACAGGTTCGCGCCGAAAGCCAACAGGCGGCCGTCGCAGTCCTTTACCACGAACTCGCGCGAGTGCCATGGCAT
GTTGGCAACTCCGCGAGTGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; ECF-Sigma Factor; RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor Sigma; RNA Polymerase; Sigma-70 Factor; ECF-Family Protein RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70-Like Factor; RNA Polymerase ECF-Type Sigma Factor SigJ; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSNPAASFEPYRRRLLGLAYRMLGSMADGEDAVQETYLRWHAADRGKVSDPRAFLMTTTARICLDMLTSARARREEYVGP
WLPEPVVDTATLAPDSRTELAEDLSIALLLTLDRLSPLERAAFLLHDVFDFSFTEVAATLERSEAACRQLAARARSHVRE
IRPRGAVAAPPRSAEIDARHEQLMLAFVAATRSGDLNALTNLLAGDVRIVTDGGGKVAAALNVLEGADRAARFLVGATRK
GWRDDFTLRFATINGLPGVILDGPEGPVQTTAFQIEDAVIRALYVVRNPDKLRHLSAG

Sequences:

>Translated_298_residues
MSNPAASFEPYRRRLLGLAYRMLGSMADGEDAVQETYLRWHAADRGKVSDPRAFLMTTTARICLDMLTSARARREEYVGP
WLPEPVVDTATLAPDSRTELAEDLSIALLLTLDRLSPLERAAFLLHDVFDFSFTEVAATLERSEAACRQLAARARSHVRE
IRPRGAVAAPPRSAEIDARHEQLMLAFVAATRSGDLNALTNLLAGDVRIVTDGGGKVAAALNVLEGADRAARFLVGATRK
GWRDDFTLRFATINGLPGVILDGPEGPVQTTAFQIEDAVIRALYVVRNPDKLRHLSAG
>Mature_297_residues
SNPAASFEPYRRRLLGLAYRMLGSMADGEDAVQETYLRWHAADRGKVSDPRAFLMTTTARICLDMLTSARARREEYVGPW
LPEPVVDTATLAPDSRTELAEDLSIALLLTLDRLSPLERAAFLLHDVFDFSFTEVAATLERSEAACRQLAARARSHVREI
RPRGAVAAPPRSAEIDARHEQLMLAFVAATRSGDLNALTNLLAGDVRIVTDGGGKVAAALNVLEGADRAARFLVGATRKG
WRDDFTLRFATINGLPGVILDGPEGPVQTTAFQIEDAVIRALYVVRNPDKLRHLSAG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32563; Mature: 32431

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPAASFEPYRRRLLGLAYRMLGSMADGEDAVQETYLRWHAADRGKVSDPRAFLMTTTA
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
RICLDMLTSARARREEYVGPWLPEPVVDTATLAPDSRTELAEDLSIALLLTLDRLSPLER
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
AAFLLHDVFDFSFTEVAATLERSEAACRQLAARARSHVREIRPRGAVAAPPRSAEIDARH
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
EQLMLAFVAATRSGDLNALTNLLAGDVRIVTDGGGKVAAALNVLEGADRAARFLVGATRK
HHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
GWRDDFTLRFATINGLPGVILDGPEGPVQTTAFQIEDAVIRALYVVRNPDKLRHLSAG
CCCCCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
>Mature Secondary Structure 
SNPAASFEPYRRRLLGLAYRMLGSMADGEDAVQETYLRWHAADRGKVSDPRAFLMTTTA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
RICLDMLTSARARREEYVGPWLPEPVVDTATLAPDSRTELAEDLSIALLLTLDRLSPLER
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
AAFLLHDVFDFSFTEVAATLERSEAACRQLAARARSHVREIRPRGAVAAPPRSAEIDARH
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
EQLMLAFVAATRSGDLNALTNLLAGDVRIVTDGGGKVAAALNVLEGADRAARFLVGATRK
HHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
GWRDDFTLRFATINGLPGVILDGPEGPVQTTAFQIEDAVIRALYVVRNPDKLRHLSAG
CCCCCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA