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The map label for this gene is yddS [C]

Identifier: 116622558

GI number: 116622558

Start: 4371619

End: 4373358

Strand: Reverse

Name: yddS [C]

Synonym: Acid_3456

Alternate gene names: 116622558

Gene position: 4373358-4371619 (Counterclockwise)

Preceding gene: 116622559

Following gene: 116622557

Centisome position: 43.88

GC content: 63.85

Gene sequence:

>1740_bases
TTGCAGTTGTTACGTACGGCGCTATTGCTGGTGACGCCGGTATGGCTCGCCCATGCCTTGCCTGAGGACCGTTTGGTGCT
TCCGGGACCCGCCGGTACGCGCGGCGGAAGACTGGTTTCGGCGCAGCGGACCGAGCCGAAAACGCTCAACTGGCTAACCG
CGGCGGACGCAGGCTCGCGCGAAGTCCTGCAGCGCCTGATGGCGGACCTGATCCACATCAACCGGCACACCCTGCAGCCG
GAAAGTGCGCTTGCCAAATCCTGGAAAGGCTCGGCGGACGGGCTGCACTGGATTCTGGAATTGCGGCAGGGACTGCGCTT
CTCAGACGGGCAGCCGTTCGACGCCGACGACGTGGTGTTTACCTTCCAGGTCGTGCTGGATGAGAAGGTCCACTCGGCGC
AGCGCGATTTGCTGATGCTCGAGGACAAGCCGATCGTGGTGCGCAAGCTCGACCGCTACCGCGTGCAGTTCGACCTGCCG
CAGGTCTATTCGGTGGCCGACCGGCTGTTCGACGGCATATTCATTCTGCCGCGCCATCTGCTGGAATCGGCGTACAAGCA
GGGCAAATTGGAACAGGCGTGGACGCTTTCCACGCCGCCGGCCCAGATCGCGGGCATGGGGCCTTTCCGCTTCAAGGAGT
ACGTGCCGGGAGAACGCATCACGCTGGAGCGCAATCCCTACTACTGGAAAGTGGATTCGGCGGGCACGCAGCTGCCCTAC
CTGGACAAGGTGACTTTCCTCTTTTCGGGCACGGAAGATAACCAGGTGCTGCGCTTCCAGGCGGGGGAGAGCGACGTCAT
CAGCCGGGTCGGGCCGCGCAACTTCGAGGCCTTGGAGAAGAGCCGCAGGCGCGCCGAATTCGATCTGGTAAACCTCGGCG
CGAGCCTGGAATATTCGTTCCTGTTTTTCAACCTGGCGGAGACTCCGCGGGGCGCCTCGCCGGAATTGGCGGCCCACCTG
GCGGTGCTGCGGCGGACCAAGTTCCGGCAGGCAGTGTCGGCCGCGATCGATCGCGAGTCGCTGGTGCGCACGGTTTACCT
GGGGCGCGCGGTGGCGCTGGCGGGACCGGTGCCGCCGGGGAATCGCTATTGGATCAACAGCAAGCTGCCGCCGCCCTTAC
GAAATTTGGAGCGCGCGCGCCACTTGCTGGCGTCGGACGGGTTTCAGTGGAATGCGGAAGGTGCGCTGCTCGATCCCGAT
GGCCGGCCGGTGGAGTTTTCCATCCTGACCAGCAATAACAACCGGGAGCGCCAGCAGATGGCGCAGTTGATCCAGGATGA
CCTGAAGCAGATCGGGATCCGGGTGACGCTGACGCCGTTGGAATTCCGCAGCCTGCTGGACCTGGTGCAGCGCACCCGGC
AGTACGAGGCATGCATGCTTTCGCTGGCGAGCGCGGACGCGGATCCGAATCCCGACATGCCGGTGTGGGTTTCGAGCGGG
TCCAACCATTTCTGGAATCCCGGGCAGAAGACTCCGGCGACACCGTGGGAGGCGGAAATCGATAGCCTGATGCGGCGCCA
GATGGTGACGCGGGAGTACAAGGAGCGCAAGCGCCTGTTCGACCGGGTGCAGGAGATCCTGGTGGAATATCAGCCTCTGG
TGGCGCTGGTGAGCCCCAACCTGCTGGTAGGCGCGCGTAAGAATCTGGCCAATTTCCAGCCCGCGCTGCTGGAGCCATAC
ACACTCTGGAATATCGAGCAACTCTACTGGCGGAGGGCGACCTCCGGAGCGCGGCAATGA

Upstream 100 bases:

>100_bases
CGCGGCGCCTAATGGTAACGTTATCCCTCCAGTACTTTGGTTAATATCCTTTTTGCTCACAATTAGTTAAACTACTCACG
AATACTTCGGAGACCTCCGG

Downstream 100 bases:

>100_bases
GCTTGCAGCCGTCCCCCGACTGGAGCAACACGCGCCTGGTAGCGGAATGCCTGGCGGGCAACGAGCGGGCGTGGAGCGCG
CTGCTGGAACGCTACAAGAA

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 579; Mature: 579

Protein sequence:

>579_residues
MQLLRTALLLVTPVWLAHALPEDRLVLPGPAGTRGGRLVSAQRTEPKTLNWLTAADAGSREVLQRLMADLIHINRHTLQP
ESALAKSWKGSADGLHWILELRQGLRFSDGQPFDADDVVFTFQVVLDEKVHSAQRDLLMLEDKPIVVRKLDRYRVQFDLP
QVYSVADRLFDGIFILPRHLLESAYKQGKLEQAWTLSTPPAQIAGMGPFRFKEYVPGERITLERNPYYWKVDSAGTQLPY
LDKVTFLFSGTEDNQVLRFQAGESDVISRVGPRNFEALEKSRRRAEFDLVNLGASLEYSFLFFNLAETPRGASPELAAHL
AVLRRTKFRQAVSAAIDRESLVRTVYLGRAVALAGPVPPGNRYWINSKLPPPLRNLERARHLLASDGFQWNAEGALLDPD
GRPVEFSILTSNNNRERQQMAQLIQDDLKQIGIRVTLTPLEFRSLLDLVQRTRQYEACMLSLASADADPNPDMPVWVSSG
SNHFWNPGQKTPATPWEAEIDSLMRRQMVTREYKERKRLFDRVQEILVEYQPLVALVSPNLLVGARKNLANFQPALLEPY
TLWNIEQLYWRRATSGARQ

Sequences:

>Translated_579_residues
MQLLRTALLLVTPVWLAHALPEDRLVLPGPAGTRGGRLVSAQRTEPKTLNWLTAADAGSREVLQRLMADLIHINRHTLQP
ESALAKSWKGSADGLHWILELRQGLRFSDGQPFDADDVVFTFQVVLDEKVHSAQRDLLMLEDKPIVVRKLDRYRVQFDLP
QVYSVADRLFDGIFILPRHLLESAYKQGKLEQAWTLSTPPAQIAGMGPFRFKEYVPGERITLERNPYYWKVDSAGTQLPY
LDKVTFLFSGTEDNQVLRFQAGESDVISRVGPRNFEALEKSRRRAEFDLVNLGASLEYSFLFFNLAETPRGASPELAAHL
AVLRRTKFRQAVSAAIDRESLVRTVYLGRAVALAGPVPPGNRYWINSKLPPPLRNLERARHLLASDGFQWNAEGALLDPD
GRPVEFSILTSNNNRERQQMAQLIQDDLKQIGIRVTLTPLEFRSLLDLVQRTRQYEACMLSLASADADPNPDMPVWVSSG
SNHFWNPGQKTPATPWEAEIDSLMRRQMVTREYKERKRLFDRVQEILVEYQPLVALVSPNLLVGARKNLANFQPALLEPY
TLWNIEQLYWRRATSGARQ
>Mature_579_residues
MQLLRTALLLVTPVWLAHALPEDRLVLPGPAGTRGGRLVSAQRTEPKTLNWLTAADAGSREVLQRLMADLIHINRHTLQP
ESALAKSWKGSADGLHWILELRQGLRFSDGQPFDADDVVFTFQVVLDEKVHSAQRDLLMLEDKPIVVRKLDRYRVQFDLP
QVYSVADRLFDGIFILPRHLLESAYKQGKLEQAWTLSTPPAQIAGMGPFRFKEYVPGERITLERNPYYWKVDSAGTQLPY
LDKVTFLFSGTEDNQVLRFQAGESDVISRVGPRNFEALEKSRRRAEFDLVNLGASLEYSFLFFNLAETPRGASPELAAHL
AVLRRTKFRQAVSAAIDRESLVRTVYLGRAVALAGPVPPGNRYWINSKLPPPLRNLERARHLLASDGFQWNAEGALLDPD
GRPVEFSILTSNNNRERQQMAQLIQDDLKQIGIRVTLTPLEFRSLLDLVQRTRQYEACMLSLASADADPNPDMPVWVSSG
SNHFWNPGQKTPATPWEAEIDSLMRRQMVTREYKERKRLFDRVQEILVEYQPLVALVSPNLLVGARKNLANFQPALLEPY
TLWNIEQLYWRRATSGARQ

Specific function: Probably part of a binding-protein-dependent transport system [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=561, Percent_Identity=23.7076648841355, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1789966, Length=533, Percent_Identity=23.4521575984991, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787052, Length=528, Percent_Identity=23.1060606060606, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1789887, Length=367, Percent_Identity=26.9754768392371, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787495, Length=474, Percent_Identity=24.2616033755274, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787551, Length=584, Percent_Identity=23.972602739726, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 65849; Mature: 65849

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLLRTALLLVTPVWLAHALPEDRLVLPGPAGTRGGRLVSAQRTEPKTLNWLTAADAGSR
CHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCHH
EVLQRLMADLIHINRHTLQPESALAKSWKGSADGLHWILELRQGLRFSDGQPFDADDVVF
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEE
TFQVVLDEKVHSAQRDLLMLEDKPIVVRKLDRYRVQFDLPQVYSVADRLFDGIFILPRHL
EHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHEEEECCHHHHHHHHHHHCCHHHHHHHH
LESAYKQGKLEQAWTLSTPPAQIAGMGPFRFKEYVPGERITLERNPYYWKVDSAGTQLPY
HHHHHHCCCCCCCEECCCCCHHHCCCCCHHHHHCCCCCEEEEECCCEEEEECCCCCCCCC
LDKVTFLFSGTEDNQVLRFQAGESDVISRVGPRNFEALEKSRRRAEFDLVNLGASLEYSF
CCCEEEEEECCCCCEEEEEECCCHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCEEEE
LFFNLAETPRGASPELAAHLAVLRRTKFRQAVSAAIDRESLVRTVYLGRAVALAGPVPPG
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
NRYWINSKLPPPLRNLERARHLLASDGFQWNAEGALLDPDGRPVEFSILTSNNNRERQQM
CEEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCEECCCCCEEEEEEEECCCCHHHHHH
AQLIQDDLKQIGIRVTLTPLEFRSLLDLVQRTRQYEACMLSLASADADPNPDMPVWVSSG
HHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC
SNHFWNPGQKTPATPWEAEIDSLMRRQMVTREYKERKRLFDRVQEILVEYQPLVALVSPN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
LLVGARKNLANFQPALLEPYTLWNIEQLYWRRATSGARQ
EEEECHHHHCCCCHHHCCCCHHCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQLLRTALLLVTPVWLAHALPEDRLVLPGPAGTRGGRLVSAQRTEPKTLNWLTAADAGSR
CHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCHH
EVLQRLMADLIHINRHTLQPESALAKSWKGSADGLHWILELRQGLRFSDGQPFDADDVVF
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEE
TFQVVLDEKVHSAQRDLLMLEDKPIVVRKLDRYRVQFDLPQVYSVADRLFDGIFILPRHL
EHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHEEEECCHHHHHHHHHHHCCHHHHHHHH
LESAYKQGKLEQAWTLSTPPAQIAGMGPFRFKEYVPGERITLERNPYYWKVDSAGTQLPY
HHHHHHCCCCCCCEECCCCCHHHCCCCCHHHHHCCCCCEEEEECCCEEEEECCCCCCCCC
LDKVTFLFSGTEDNQVLRFQAGESDVISRVGPRNFEALEKSRRRAEFDLVNLGASLEYSF
CCCEEEEEECCCCCEEEEEECCCHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCEEEE
LFFNLAETPRGASPELAAHLAVLRRTKFRQAVSAAIDRESLVRTVYLGRAVALAGPVPPG
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
NRYWINSKLPPPLRNLERARHLLASDGFQWNAEGALLDPDGRPVEFSILTSNNNRERQQM
CEEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCEECCCCCEEEEEEEECCCCHHHHHH
AQLIQDDLKQIGIRVTLTPLEFRSLLDLVQRTRQYEACMLSLASADADPNPDMPVWVSSG
HHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECC
SNHFWNPGQKTPATPWEAEIDSLMRRQMVTREYKERKRLFDRVQEILVEYQPLVALVSPN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
LLVGARKNLANFQPALLEPYTLWNIEQLYWRRATSGARQ
EEEECHHHHCCCCHHHCCCCHHCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]