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The map label for this gene is yqhC [H]

Identifier: 116622498

GI number: 116622498

Start: 4299578

End: 4300528

Strand: Reverse

Name: yqhC [H]

Synonym: Acid_3396

Alternate gene names: 116622498

Gene position: 4300528-4299578 (Counterclockwise)

Preceding gene: 116622499

Following gene: 116622497

Centisome position: 43.15

GC content: 59.41

Gene sequence:

>951_bases
ATGGCAGTTAGCATAGTGGAGATGCGCGCATCGAATTCGCTCTGGAGAGAGGCACGTTCGATTCTGGTCCGGCATTGCGA
GGAGGACGGCCTGTTCACGGCCGTGATACCCGGCGTGCATTTGATGCGCTTCGGATGGAGGAGCCAGCCGCTTGTGGCGA
CGCAATTCCCCTGCATGGCGATGGTGATTCAGGGGACGAAGAGCGTTGAGTTTGGCGAGACGAATCTTGAGTACGGGGCG
GGACAGTATCTTCTTACATCGATCGATGTGCCCGCCACTTCCAGGATAGTGAACGCAAGCAAGGCGCGGCCTCTGTTGGC
CGTAGGCGTCCAAATCGATTTTGCGGAATTGAAGGAAGTGATCCGGCGTTGCGACGCGATGCCGCAACTGAATACTCAGC
CCGGGATCACGATTTTCGACGCCGACCTCGAAATTCTGGACGCTGTGGTTCGGCTTCTCCGCTTGCTGGACACGCCGGAG
CATTCGAAGCCACTGGCTCCGCTGATCCGGCAGGAGATCTTATATCGATTGCTCTCGGGCCGTTCCGGTTCGCGATTGCT
GGAGATCTGCCGAAGCGGCAGTCCGTCCAACCGTATCGCGGAGGTGACCGGGTGGATCAAGAAGCATTTCGCGGAGAGTT
TCCTCGTGGAGGGACTCGCGCATCACGTGGGGATGAGTCCGAGTTCGTTCCACCAGCACTTCAAAGCCGTCACCGGGATG
ACGCCGATTCAGTATCAGCGGCGGATCCGTCTTCAGGAAGCGCGGAAGAGCCTGCTGATGGAGGCAATCAACATTGGCGA
GGCAAGCGTCAGGGTCGGATACGAGAGCCACTCTCAATTCAGCAAGGACTATCGCCAGTACTTCGGCCGGCTGCCGAAGG
ATGACATCGCGGCGCACGCGCACGGCGGCGCGTCGATCGATCGATATACGCCGGCGGCGCCGATGCGATGA

Upstream 100 bases:

>100_bases
TATGGATATATCAAGGCGGCACTCGCCGGCAGGCTGGCCCAGGTGGAGGCTCATAAGAATCTCGCGACCGACTGCGACGA
CGTATAACATTCGCCGGCTT

Downstream 100 bases:

>100_bases
ACAAACGCGCAGCAAGAGATCGCTCCCTGACGGTCGCGGCTCTGATGAATCGGCTATCCTCTCCTCATGTCATCCAATCC
GCAATATCGCTCGCGCGCTG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MAVSIVEMRASNSLWREARSILVRHCEEDGLFTAVIPGVHLMRFGWRSQPLVATQFPCMAMVIQGTKSVEFGETNLEYGA
GQYLLTSIDVPATSRIVNASKARPLLAVGVQIDFAELKEVIRRCDAMPQLNTQPGITIFDADLEILDAVVRLLRLLDTPE
HSKPLAPLIRQEILYRLLSGRSGSRLLEICRSGSPSNRIAEVTGWIKKHFAESFLVEGLAHHVGMSPSSFHQHFKAVTGM
TPIQYQRRIRLQEARKSLLMEAINIGEASVRVGYESHSQFSKDYRQYFGRLPKDDIAAHAHGGASIDRYTPAAPMR

Sequences:

>Translated_316_residues
MAVSIVEMRASNSLWREARSILVRHCEEDGLFTAVIPGVHLMRFGWRSQPLVATQFPCMAMVIQGTKSVEFGETNLEYGA
GQYLLTSIDVPATSRIVNASKARPLLAVGVQIDFAELKEVIRRCDAMPQLNTQPGITIFDADLEILDAVVRLLRLLDTPE
HSKPLAPLIRQEILYRLLSGRSGSRLLEICRSGSPSNRIAEVTGWIKKHFAESFLVEGLAHHVGMSPSSFHQHFKAVTGM
TPIQYQRRIRLQEARKSLLMEAINIGEASVRVGYESHSQFSKDYRQYFGRLPKDDIAAHAHGGASIDRYTPAAPMR
>Mature_315_residues
AVSIVEMRASNSLWREARSILVRHCEEDGLFTAVIPGVHLMRFGWRSQPLVATQFPCMAMVIQGTKSVEFGETNLEYGAG
QYLLTSIDVPATSRIVNASKARPLLAVGVQIDFAELKEVIRRCDAMPQLNTQPGITIFDADLEILDAVVRLLRLLDTPEH
SKPLAPLIRQEILYRLLSGRSGSRLLEICRSGSPSNRIAEVTGWIKKHFAESFLVEGLAHHVGMSPSSFHQHFKAVTGMT
PIQYQRRIRLQEARKSLLMEAINIGEASVRVGYESHSQFSKDYRQYFGRLPKDDIAAHAHGGASIDRYTPAAPMR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=274, Percent_Identity=31.3868613138686, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1790339, Length=150, Percent_Identity=26.6666666666667, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35293; Mature: 35162

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSIVEMRASNSLWREARSILVRHCEEDGLFTAVIPGVHLMRFGWRSQPLVATQFPCMA
CCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHCCHHHHHHCCCCCCCEECCCHHHH
MVIQGTKSVEFGETNLEYGAGQYLLTSIDVPATSRIVNASKARPLLAVGVQIDFAELKEV
HHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEECEECHHHHHHH
IRRCDAMPQLNTQPGITIFDADLEILDAVVRLLRLLDTPEHSKPLAPLIRQEILYRLLSG
HHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
RSGSRLLEICRSGSPSNRIAEVTGWIKKHFAESFLVEGLAHHVGMSPSSFHQHFKAVTGM
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
TPIQYQRRIRLQEARKSLLMEAINIGEASVRVGYESHSQFSKDYRQYFGRLPKDDIAAHA
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCHHHHHHHHHHHHHHCCCCHHHHHHHC
HGGASIDRYTPAAPMR
CCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVSIVEMRASNSLWREARSILVRHCEEDGLFTAVIPGVHLMRFGWRSQPLVATQFPCMA
CEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHCCHHHHHHCCCCCCCEECCCHHHH
MVIQGTKSVEFGETNLEYGAGQYLLTSIDVPATSRIVNASKARPLLAVGVQIDFAELKEV
HHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEECEECHHHHHHH
IRRCDAMPQLNTQPGITIFDADLEILDAVVRLLRLLDTPEHSKPLAPLIRQEILYRLLSG
HHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
RSGSRLLEICRSGSPSNRIAEVTGWIKKHFAESFLVEGLAHHVGMSPSSFHQHFKAVTGM
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
TPIQYQRRIRLQEARKSLLMEAINIGEASVRVGYESHSQFSKDYRQYFGRLPKDDIAAHA
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCHHHHHHHHHHHHHHCCCCHHHHHHHC
HGGASIDRYTPAAPMR
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]