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The map label for this gene is yvdB [H]

Identifier: 116622442

GI number: 116622442

Start: 4226022

End: 4227305

Strand: Direct

Name: yvdB [H]

Synonym: Acid_3340

Alternate gene names: 116622442

Gene position: 4226022-4227305 (Clockwise)

Preceding gene: 116622441

Following gene: 116622443

Centisome position: 42.41

GC content: 66.51

Gene sequence:

>1284_bases
TTGAACCTTCGCGCCAAGTTGGGACTCGGGTCCCACGGCGCGGAACGGTACGGTTGGACGCAGCTCCTTGGCGATTGTTC
CGGCGGGGTCATCGCAGCGCTCATCGCGCTGCCGTATGGCCTCGCCATGGCCTCCCTGATGGGACTGCCGCCCGTTCTGG
GCGTGTTCACTTCGATATTGACCGCTCCGGTGATTGCGCTGTTCGGCCGCAATCCGGTTCTGATCGGTGGGACCGCGAGT
GCGACCGTGCCATTCCTGGCGCTGGCCGCGCGACAGCACGGCGTAGCCGGGGCCGCGCAACTTTCCATTCTGGCTTCCGC
TTTTATGCTGCTCTTCGCAGTAACAGGGCTTGGGCGCCATATGGCGAAGGTGCCGCACGCGGTGGTCACCGGATTTTCCT
GCGGGATCGGCGGGATGATGCTGATTTCGCAACTCGACATCATGTTCGGCCTGGCGACCCCGATGGGACGATCCGCGGGA
TCGGCCGTGGCGCAACTGGCCTCGGTGGTGAACCGGCTCGGCGAGGCGCGCATGGTGCCGCTGGTGCTCGGGCTCGCAGT
GATTCTGGTGGCGACGGTGGCCGCGCGGATTTCGCCGCACGCGCCGGCGCCCTTGATCGGCGTAGTGCTGGCGTTTGCGA
TCGCGCGATTTTTCGGTTTTCGCGAGAAGGAAGTCGGCGTACTGCCCGCGATGCTGCCGCCGGTGGTCGGGTTCGCCTGG
AAGTGGAAGGACACGCTGGCGATGTTGCCCTCCGCGGCCGCGCTGGCGTTTGTGTCCAGCGTGAATATCCTGATCACGTC
GCGCGTGGTGGAGCATTTCCGCGGGAAGCACAAGCGCATGAAGGCATCGGACGCGGACGCCGAATTAGGTGCGTACGGGC
TGGCGAATTGCGTGGCGGGCGCGTTCGGCGCACCGATGAGCGTGGGCATTCCAGCGCGCAGCCTGGCGGTAGTGCGCTGC
GGCGGAACTACCGCGCTGGCGAATCTGCTGCACGCGGCGGTGTTGCTGGTGATTCTGTGGCTGGGCTCCGGGATAGTCTC
GCACATTCCGATTCCCGCTCTGGCGGGCGTCACGGCGTGGATGGGACTCTGCCTGCTGGATTGGAGCGCGTGGCACCGTT
TGCCGAGGATGGCGCGAGTGGATGCGGCTGCGTTCCTGCTGACCGCGGCGAGTGTGCTGGCGGTGAACGCCGTGCTCGCG
GTGGCGCTCGGCTGCTCTCTCTACGGAGTGCACGCACTTTGGGCGCGCCGGGTTCGGCCGGCGAACGTACCGGAAGCCGT
GTAG

Upstream 100 bases:

>100_bases
TCGGCCGCGTATGGAAGGCCTGGCCCAATCACGTGCGCGTCACCGTGGGCACCGCCGAAGAGATGAAGAAGTTCCAGACG
GCGTTCCTTAAGGTGATGGC

Downstream 100 bases:

>100_bases
GCGGAGGGGGGGTAGCGTCCCCGATGGCTCCCTAGCGGTCGCGGCTCTGTTTGGCCGCGATGGGAAAAGTGTGGGATTCG
TTGCGTCGTGTAACGGATCT

Product: sulfate transporter

Products: Proton [Cytoplasm]; SO42- [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MNLRAKLGLGSHGAERYGWTQLLGDCSGGVIAALIALPYGLAMASLMGLPPVLGVFTSILTAPVIALFGRNPVLIGGTAS
ATVPFLALAARQHGVAGAAQLSILASAFMLLFAVTGLGRHMAKVPHAVVTGFSCGIGGMMLISQLDIMFGLATPMGRSAG
SAVAQLASVVNRLGEARMVPLVLGLAVILVATVAARISPHAPAPLIGVVLAFAIARFFGFREKEVGVLPAMLPPVVGFAW
KWKDTLAMLPSAAALAFVSSVNILITSRVVEHFRGKHKRMKASDADAELGAYGLANCVAGAFGAPMSVGIPARSLAVVRC
GGTTALANLLHAAVLLVILWLGSGIVSHIPIPALAGVTAWMGLCLLDWSAWHRLPRMARVDAAAFLLTAASVLAVNAVLA
VALGCSLYGVHALWARRVRPANVPEAV

Sequences:

>Translated_427_residues
MNLRAKLGLGSHGAERYGWTQLLGDCSGGVIAALIALPYGLAMASLMGLPPVLGVFTSILTAPVIALFGRNPVLIGGTAS
ATVPFLALAARQHGVAGAAQLSILASAFMLLFAVTGLGRHMAKVPHAVVTGFSCGIGGMMLISQLDIMFGLATPMGRSAG
SAVAQLASVVNRLGEARMVPLVLGLAVILVATVAARISPHAPAPLIGVVLAFAIARFFGFREKEVGVLPAMLPPVVGFAW
KWKDTLAMLPSAAALAFVSSVNILITSRVVEHFRGKHKRMKASDADAELGAYGLANCVAGAFGAPMSVGIPARSLAVVRC
GGTTALANLLHAAVLLVILWLGSGIVSHIPIPALAGVTAWMGLCLLDWSAWHRLPRMARVDAAAFLLTAASVLAVNAVLA
VALGCSLYGVHALWARRVRPANVPEAV
>Mature_427_residues
MNLRAKLGLGSHGAERYGWTQLLGDCSGGVIAALIALPYGLAMASLMGLPPVLGVFTSILTAPVIALFGRNPVLIGGTAS
ATVPFLALAARQHGVAGAAQLSILASAFMLLFAVTGLGRHMAKVPHAVVTGFSCGIGGMMLISQLDIMFGLATPMGRSAG
SAVAQLASVVNRLGEARMVPLVLGLAVILVATVAARISPHAPAPLIGVVLAFAIARFFGFREKEVGVLPAMLPPVVGFAW
KWKDTLAMLPSAAALAFVSSVNILITSRVVEHFRGKHKRMKASDADAELGAYGLANCVAGAFGAPMSVGIPARSLAVVRC
GGTTALANLLHAAVLLVILWLGSGIVSHIPIPALAGVTAWMGLCLLDWSAWHRLPRMARVDAAAFLLTAASVLAVNAVLA
VALGCSLYGVHALWARRVRPANVPEAV

Specific function: Possible Sulfate Transporter. [C]

COG id: COG0659

COG function: function code P; Sulfate permease and related transporters (MFS superfamily)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 STAS domain [H]

Homologues:

Organism=Homo sapiens, GI4557535, Length=366, Percent_Identity=25.4098360655738, Blast_Score=79, Evalue=7e-15,
Organism=Escherichia coli, GI87081859, Length=439, Percent_Identity=25.0569476082005, Blast_Score=89, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17566848, Length=474, Percent_Identity=22.9957805907173, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193203292, Length=438, Percent_Identity=22.1461187214612, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002645
- InterPro:   IPR001902
- InterPro:   IPR011547 [H]

Pfam domain/function: PF01740 STAS; PF00916 Sulfate_transp [H]

EC number: NA

Molecular weight: Translated: 43919; Mature: 43919

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRAKLGLGSHGAERYGWTQLLGDCSGGVIAALIALPYGLAMASLMGLPPVLGVFTSIL
CCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
TAPVIALFGRNPVLIGGTASATVPFLALAARQHGVAGAAQLSILASAFMLLFAVTGLGRH
HHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MAKVPHAVVTGFSCGIGGMMLISQLDIMFGLATPMGRSAGSAVAQLASVVNRLGEARMVP
HHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHH
LVLGLAVILVATVAARISPHAPAPLIGVVLAFAIARFFGFREKEVGVLPAMLPPVVGFAW
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC
KWKDTLAMLPSAAALAFVSSVNILITSRVVEHFRGKHKRMKASDADAELGAYGLANCVAG
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
AFGAPMSVGIPARSLAVVRCGGTTALANLLHAAVLLVILWLGSGIVSHIPIPALAGVTAW
HCCCCCCCCCCHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHH
MGLCLLDWSAWHRLPRMARVDAAAFLLTAASVLAVNAVLAVALGCSLYGVHALWARRVRP
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ANVPEAV
CCCCCCC
>Mature Secondary Structure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CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; SO42- [Periplasm] [C]

Specific reaction: Proton [Periplasm] + SO42- [Periplasm] = Proton [Cytoplasm] + SO42- [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]