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The map label for this gene is ybeQ [H]

Identifier: 116622377

GI number: 116622377

Start: 4138345

End: 4139163

Strand: Direct

Name: ybeQ [H]

Synonym: Acid_3271

Alternate gene names: 116622377

Gene position: 4138345-4139163 (Clockwise)

Preceding gene: 116622376

Following gene: 116622378

Centisome position: 41.53

GC content: 63.74

Gene sequence:

>819_bases
ATGAGCTGCTTTTCCACGCGTCTGGGGATTTTGGGACCTGTGGTGCTTTCGCTTGCCGCCGCACCGGCGTTTGCCGATAC
CGCGGCCGGCATCGCTGCATTCAAGAATAAGGATTATCCGAAGGCGTACAAGGAATGGAAGGCCGCGGCCGACGCCGGCG
ATGCCGAAGCCCAATTCGATTTGGGTGTCCTCTACGCGCAAGGGATGGGTGTTCGCCGCGATCTTACGGTGGCGACGAGC
TGGTATCGCAAGGCTGCCGAGCAAGGCAATGCGGAAGCGCAGTTTGCCATGGGCCAGATCTACTCCCGCGGATGGGGAGT
GCCCCGAGACACCGCGGATGCGTTGCGGTGGTTTCAGATGGCGAACCAACCGGATTCGGACGGGCCACCCACCGACTGGA
CGGTGATCGAGGGCCACGGCATCCCGCAGGACGTGAAGCAGGCAGCGTTTTGGTACCGGCAGGCCGCTGATAAAGGGCAT
CCCGAAGCGCAATACAACCTGGCCGCCCTATATGCGAGCGGTAACGGAGTCAAACGCGACGAAGAGCAGGCGGCGCGCTG
GGTGAGCGCCTCGGCATCGCAGGGGTATGCGACGGCGATGTCGAACTTCGGCGCGCGCTGCGCGGCGGGCAACGGCGTCG
CTAAAGACGACAAGCGTGCGTATTTCTGGCTCACCCTGGCCTACCTGCATGGGGACCACGGCGCCGAGAAATTGCGTGCG
GCGGAGGCAGCCAAACTGACGCCGGCGGAGGTTTCCGAGCAGGACCGCGCCGCGCAGAACTGGAAGCCGAGAATGGTGGC
GGCCAATTCCAGGCAGTAA

Upstream 100 bases:

>100_bases
GTGTTTCTTTCTCTGCGTGACTCTGCGGGTCTGCGAGAAAAGAGAGGTATTGGCGCCCGGCGCCTCATCGTGATACAACA
GAGGCGGACAGGAGGGCTGC

Downstream 100 bases:

>100_bases
GGCAGTGGTAGTGGTGGCCGGGCTGCTGGCTGCCGCCGCGGCGCGCGGGCAGCACGGACGCGATCCCGCGGCGGTGCTGG
AGCAGGCGCGCGCGCGGCTG

Product: Sel1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MSCFSTRLGILGPVVLSLAAAPAFADTAAGIAAFKNKDYPKAYKEWKAAADAGDAEAQFDLGVLYAQGMGVRRDLTVATS
WYRKAAEQGNAEAQFAMGQIYSRGWGVPRDTADALRWFQMANQPDSDGPPTDWTVIEGHGIPQDVKQAAFWYRQAADKGH
PEAQYNLAALYASGNGVKRDEEQAARWVSASASQGYATAMSNFGARCAAGNGVAKDDKRAYFWLTLAYLHGDHGAEKLRA
AEAAKLTPAEVSEQDRAAQNWKPRMVAANSRQ

Sequences:

>Translated_272_residues
MSCFSTRLGILGPVVLSLAAAPAFADTAAGIAAFKNKDYPKAYKEWKAAADAGDAEAQFDLGVLYAQGMGVRRDLTVATS
WYRKAAEQGNAEAQFAMGQIYSRGWGVPRDTADALRWFQMANQPDSDGPPTDWTVIEGHGIPQDVKQAAFWYRQAADKGH
PEAQYNLAALYASGNGVKRDEEQAARWVSASASQGYATAMSNFGARCAAGNGVAKDDKRAYFWLTLAYLHGDHGAEKLRA
AEAAKLTPAEVSEQDRAAQNWKPRMVAANSRQ
>Mature_271_residues
SCFSTRLGILGPVVLSLAAAPAFADTAAGIAAFKNKDYPKAYKEWKAAADAGDAEAQFDLGVLYAQGMGVRRDLTVATSW
YRKAAEQGNAEAQFAMGQIYSRGWGVPRDTADALRWFQMANQPDSDGPPTDWTVIEGHGIPQDVKQAAFWYRQAADKGHP
EAQYNLAALYASGNGVKRDEEQAARWVSASASQGYATAMSNFGARCAAGNGVAKDDKRAYFWLTLAYLHGDHGAEKLRAA
EAAKLTPAEVSEQDRAAQNWKPRMVAANSRQ

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI151301150, Length=182, Percent_Identity=30.2197802197802, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI19923669, Length=176, Percent_Identity=30.1136363636364, Blast_Score=79, Evalue=5e-15,
Organism=Escherichia coli, GI87081769, Length=206, Percent_Identity=36.4077669902913, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786867, Length=156, Percent_Identity=29.4871794871795, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17563256, Length=193, Percent_Identity=27.4611398963731, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21355295, Length=177, Percent_Identity=31.0734463276836, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 29403; Mature: 29272

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS00602 ALDOLASE_CLASS_II_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCFSTRLGILGPVVLSLAAAPAFADTAAGIAAFKNKDYPKAYKEWKAAADAGDAEAQFD
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHH
LGVLYAQGMGVRRDLTVATSWYRKAAEQGNAEAQFAMGQIYSRGWGVPRDTADALRWFQM
HEEHEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
ANQPDSDGPPTDWTVIEGHGIPQDVKQAAFWYRQAADKGHPEAQYNLAALYASGNGVKRD
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCC
EEQAARWVSASASQGYATAMSNFGARCAAGNGVAKDDKRAYFWLTLAYLHGDHGAEKLRA
HHHHHHHHHCCCCCCHHHHHHHCCCEECCCCCCCCCCCCEEEEEEEEEHHCCCCHHHHHH
AEAAKLTPAEVSEQDRAAQNWKPRMVAANSRQ
HHHHCCCHHHHCHHHHHHHCCCCCEECCCCCC
>Mature Secondary Structure 
SCFSTRLGILGPVVLSLAAAPAFADTAAGIAAFKNKDYPKAYKEWKAAADAGDAEAQFD
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHH
LGVLYAQGMGVRRDLTVATSWYRKAAEQGNAEAQFAMGQIYSRGWGVPRDTADALRWFQM
HEEHEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
ANQPDSDGPPTDWTVIEGHGIPQDVKQAAFWYRQAADKGHPEAQYNLAALYASGNGVKRD
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCC
EEQAARWVSASASQGYATAMSNFGARCAAGNGVAKDDKRAYFWLTLAYLHGDHGAEKLRA
HHHHHHHHHCCCCCCHHHHHHHCCCEECCCCCCCCCCCCEEEEEEEEEHHCCCCHHHHHH
AEAAKLTPAEVSEQDRAAQNWKPRMVAANSRQ
HHHHCCCHHHHCHHHHHHHCCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]