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The map label for this gene is yfiO [C]

Identifier: 116622298

GI number: 116622298

Start: 4041330

End: 4042766

Strand: Direct

Name: yfiO [C]

Synonym: Acid_3192

Alternate gene names: 116622298

Gene position: 4041330-4042766 (Clockwise)

Preceding gene: 116622297

Following gene: 116622299

Centisome position: 40.55

GC content: 62.35

Gene sequence:

>1437_bases
ATGGTTCGAAAAGGATTTCGTTTTACCGCCGCGATGGTCGCGGTTGCGGTGCTTCTGAGCGGCTGTGGGATTCGCCGCAA
GAAGTACGACAACCCGATCACCAAGGACACCCAACAGCCCGATAAGGTGCTGTTCGACAAGGCCATCAACGACATCGAGC
ACAGCCGCTTTGAGATCGCGCGGTTGCTGCTGCAAAACCTGATCAACACCTACGACACCAGCGAATATCTGGCCAAGGCC
AAGCTGGCCATCGCCGATGCCTGGTTCCGCGAGGGCGGTGCCCATGGTTTGGCGCAGGCCGAAGCCGAGTATAAGGATTT
CATTCTGTTCTACCCGGCCATGGAAGAGGCGGCCGAGGCGCAGGAGAAGGTCTGCGACATCCATTACAAGCAGATGGACA
AGGCCGATCGCGATCCGAAGCACGCGCTCCTCGCCGAGCAGGAATGCAAGCAGCTGATCCTGCAGTTCCCCAACAGCAAG
TTCGCTCCGCTGGCCCAGCAGAAGCTGCGCGACATTCAGGAAGTGCTTGCGGACAGCGAGTTCCGCGTGGGCACGCTGTA
TCAGAAAAAAGGCAGCTTCCCCGCGGCTTCAAATCGCTTCCAGGCCTTGGCGGACCATTTCCCGCTGTACAGCAAGGCCG
ACGAAGCCCTCTGGCAGCTGGCCGACAGCTACCACCGCATGGGCGACCGTTTCGAGAGCCAGCAGGTCACCGCATACCAG
CGCATCGTGAAGGATTATCCGCTCAGCATTCACGCCGAGGATGCGCGTGCGCAGCTCGAGGTGATGAAGCGCACCGTGCC
CGAGGCCGATCCCGTGGCTGTGGCGCGGATGAAGTACGAGCAGGAGAATCGCATCAAGCGCGGGATGATGAGCAATTTCT
GGGGCATGTTCAGTGGGCGTCCCGATATGACTGCCGCCGCGAAATCCGGTGCGCCCTCGATGGAAGGCTACCGTCCGAGC
ATCCCGGCCAGCGTGCCGGCCGCCGCCGCCAACAATCAGCTGGGCACCAATGATGTCAGCATCACCCAGCCTGGCGGAGA
TAGCAGCGCGATCGATAAGGGCGCCGAGGCCCGTTCCAATCCGAATGGAACCGACCCGGCTCCTGCCGCGGGCGCCGCCG
CAGCGACCGCGCCCGCGACTCCGACCGCGGAAAGCCCCAAGACTCCGAGCCCCGACGAGACGGCGAAGCAGGCCACGATG
AGTCCTTCGGAGCAGAAGAAGGCCTATCGCGAGGCGCTCAAAAAGCAGACCGACGCGGTGAAGAAGGCCCAGTCCGACCG
CAAGAAGAAGGAAGCGCAGCAGGCGCAGGCAGTCAAGGAACAGAAGAAGAAGACCAAGGAACTGCAGAAGCAGGATCCCA
AGCAGGATCCCAAGACCGACCAGAAGCCGCCCGCTCCCGCCGGCGGCGCGGACACTGCCTCTCCGGCCAAGCAATGA

Upstream 100 bases:

>100_bases
CCACGATGCGTGAGATGCGGGAAATCGCGGCTCATGCCACCGCGGTCCAGTGTTAATCGTTTGGGTAAGCAGCAGTATTT
CTTGGGGTGATTGATTGATT

Downstream 100 bases:

>100_bases
GCCGCATCCTGCTGGTGGACGATAGTCCCCATGCGCAGCGTATGGGCGAGCGTATCCTGAGCGAAGAAGGGTACGAAGTC
GTCACCGTCAGCAACGCGGA

Product: DNA uptake lipoprotein-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MVRKGFRFTAAMVAVAVLLSGCGIRRKKYDNPITKDTQQPDKVLFDKAINDIEHSRFEIARLLLQNLINTYDTSEYLAKA
KLAIADAWFREGGAHGLAQAEAEYKDFILFYPAMEEAAEAQEKVCDIHYKQMDKADRDPKHALLAEQECKQLILQFPNSK
FAPLAQQKLRDIQEVLADSEFRVGTLYQKKGSFPAASNRFQALADHFPLYSKADEALWQLADSYHRMGDRFESQQVTAYQ
RIVKDYPLSIHAEDARAQLEVMKRTVPEADPVAVARMKYEQENRIKRGMMSNFWGMFSGRPDMTAAAKSGAPSMEGYRPS
IPASVPAAAANNQLGTNDVSITQPGGDSSAIDKGAEARSNPNGTDPAPAAGAAAATAPATPTAESPKTPSPDETAKQATM
SPSEQKKAYREALKKQTDAVKKAQSDRKKKEAQQAQAVKEQKKKTKELQKQDPKQDPKTDQKPPAPAGGADTASPAKQ

Sequences:

>Translated_478_residues
MVRKGFRFTAAMVAVAVLLSGCGIRRKKYDNPITKDTQQPDKVLFDKAINDIEHSRFEIARLLLQNLINTYDTSEYLAKA
KLAIADAWFREGGAHGLAQAEAEYKDFILFYPAMEEAAEAQEKVCDIHYKQMDKADRDPKHALLAEQECKQLILQFPNSK
FAPLAQQKLRDIQEVLADSEFRVGTLYQKKGSFPAASNRFQALADHFPLYSKADEALWQLADSYHRMGDRFESQQVTAYQ
RIVKDYPLSIHAEDARAQLEVMKRTVPEADPVAVARMKYEQENRIKRGMMSNFWGMFSGRPDMTAAAKSGAPSMEGYRPS
IPASVPAAAANNQLGTNDVSITQPGGDSSAIDKGAEARSNPNGTDPAPAAGAAAATAPATPTAESPKTPSPDETAKQATM
SPSEQKKAYREALKKQTDAVKKAQSDRKKKEAQQAQAVKEQKKKTKELQKQDPKQDPKTDQKPPAPAGGADTASPAKQ
>Mature_478_residues
MVRKGFRFTAAMVAVAVLLSGCGIRRKKYDNPITKDTQQPDKVLFDKAINDIEHSRFEIARLLLQNLINTYDTSEYLAKA
KLAIADAWFREGGAHGLAQAEAEYKDFILFYPAMEEAAEAQEKVCDIHYKQMDKADRDPKHALLAEQECKQLILQFPNSK
FAPLAQQKLRDIQEVLADSEFRVGTLYQKKGSFPAASNRFQALADHFPLYSKADEALWQLADSYHRMGDRFESQQVTAYQ
RIVKDYPLSIHAEDARAQLEVMKRTVPEADPVAVARMKYEQENRIKRGMMSNFWGMFSGRPDMTAAAKSGAPSMEGYRPS
IPASVPAAAANNQLGTNDVSITQPGGDSSAIDKGAEARSNPNGTDPAPAAGAAAATAPATPTAESPKTPSPDETAKQATM
SPSEQKKAYREALKKQTDAVKKAQSDRKKKEAQQAQAVKEQKKKTKELQKQDPKQDPKTDQKPPAPAGGADTASPAKQ

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52621; Mature: 52621

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRKGFRFTAAMVAVAVLLSGCGIRRKKYDNPITKDTQQPDKVLFDKAINDIEHSRFEIA
CCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RLLLQNLINTYDTSEYLAKAKLAIADAWFREGGAHGLAQAEAEYKDFILFYPAMEEAAEA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCEEEECCCHHHHHHH
QEKVCDIHYKQMDKADRDPKHALLAEQECKQLILQFPNSKFAPLAQQKLRDIQEVLADSE
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
FRVGTLYQKKGSFPAASNRFQALADHFPLYSKADEALWQLADSYHRMGDRFESQQVTAYQ
CCCHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIVKDYPLSIHAEDARAQLEVMKRTVPEADPVAVARMKYEQENRIKRGMMSNFWGMFSGR
HHHHHCCCEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDMTAAAKSGAPSMEGYRPSIPASVPAAAANNQLGTNDVSITQPGGDSSAIDKGAEARSN
CCCHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEECCCCCHHHHHCCCHHCCC
PNGTDPAPAAGAAAATAPATPTAESPKTPSPDETAKQATMSPSEQKKAYREALKKQTDAV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
KKAQSDRKKKEAQQAQAVKEQKKKTKELQKQDPKQDPKTDQKPPAPAGGADTASPAKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVRKGFRFTAAMVAVAVLLSGCGIRRKKYDNPITKDTQQPDKVLFDKAINDIEHSRFEIA
CCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RLLLQNLINTYDTSEYLAKAKLAIADAWFREGGAHGLAQAEAEYKDFILFYPAMEEAAEA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCEEEECCCHHHHHHH
QEKVCDIHYKQMDKADRDPKHALLAEQECKQLILQFPNSKFAPLAQQKLRDIQEVLADSE
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
FRVGTLYQKKGSFPAASNRFQALADHFPLYSKADEALWQLADSYHRMGDRFESQQVTAYQ
CCCHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIVKDYPLSIHAEDARAQLEVMKRTVPEADPVAVARMKYEQENRIKRGMMSNFWGMFSGR
HHHHHCCCEEECHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDMTAAAKSGAPSMEGYRPSIPASVPAAAANNQLGTNDVSITQPGGDSSAIDKGAEARSN
CCCHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEECCCCCHHHHHCCCHHCCC
PNGTDPAPAAGAAAATAPATPTAESPKTPSPDETAKQATMSPSEQKKAYREALKKQTDAV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
KKAQSDRKKKEAQQAQAVKEQKKKTKELQKQDPKQDPKTDQKPPAPAGGADTASPAKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]