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The map label for this gene is xerD [C]

Identifier: 116621892

GI number: 116621892

Start: 3519012

End: 3519752

Strand: Direct

Name: xerD [C]

Synonym: Acid_2776

Alternate gene names: 116621892

Gene position: 3519012-3519752 (Clockwise)

Preceding gene: 116621890

Following gene: 116621893

Centisome position: 35.31

GC content: 57.62

Gene sequence:

>741_bases
GTGACCCATCTCAGAAAAATGATGCTGGAGGAACTCCAGCGTCGTAACTATGCCCAGAGTACCGTAAAAGGCTACCTGCG
AATCGTGCAGGACTTCGCCGAGCACTTCCACCAACAGCCCGACAAACTCGGACCCGAACATCTACGCCAGTACCAGGCGC
ACCTGTTTCAGAACAAGAAGCTGAATGCGAGCACCGTACAGCAGTACGCGGCCGTTCTCCGTTTCTTCTTCAACAAGACT
TTGAAGCGGCACTACTTGCTGGATGACATTCCGATGCCCAAGCGGCATCGGAAGCTGCCGGAGATCCTGAGTCCGGATGA
GGTCGCTCTTCTGATCGGCTCGGCCAGTAATCTGTTGCACCAGACCATGCTCATGACGCTGTACTCCACTGGCGTGCGCC
GTGCCGAGTTGTGCCGGTTGAAATCCGCTGACATCGATAGCCAGCGCATGATGGTGCACATCCGTCAGGGCAAGGGCGGT
CACGACCGCGATGTGCCCTTGAGCCCCAGGTTGCTGGAGACACTGCGTGTCTACTGGCGGTGGATGAAGCCCAAAACCTA
TCTGTTTCCCGGCACCGTGAATAACTGGCGAGCCGATGTCCCCATCACCACAAAAGTGCCGTGGGAAGCCTGCCGGCAAG
CCGCCCAAAGAGCCGGCATCACCAAGCACGTCTCCCCGCACACCTTGAGGCACTATGCCGGGTTCCGAACTATTCCGGGT
GAAGGAAGTATGTGTGGGTGA

Upstream 100 bases:

>100_bases
CGTTTGAACGAAGCCACTGGCGCGGCGGACGCTACGCGTAGTGGTCTGGGTAGAGCTCGGGCTTCGACGGGCGTATTTTG
TGGGTCACAAGGAGGTCCCT

Downstream 100 bases:

>100_bases
AAGGCCCGTCAATGCTGGGGCGGAGCGCGTTCGCTCGTGGAATTACCCGGCATAGTCCTGGTCATAGATTTTGGAGAAAG
GCGAGCAGACCGTCACCAGG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTHLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFQNKKLNASTVQQYAAVLRFFFNKT
LKRHYLLDDIPMPKRHRKLPEILSPDEVALLIGSASNLLHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGG
HDRDVPLSPRLLETLRVYWRWMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHYAGFRTIPG
EGSMCG

Sequences:

>Translated_246_residues
MTHLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFQNKKLNASTVQQYAAVLRFFFNKT
LKRHYLLDDIPMPKRHRKLPEILSPDEVALLIGSASNLLHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGG
HDRDVPLSPRLLETLRVYWRWMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHYAGFRTIPG
EGSMCG
>Mature_245_residues
THLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFQNKKLNASTVQQYAAVLRFFFNKTL
KRHYLLDDIPMPKRHRKLPEILSPDEVALLIGSASNLLHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGH
DRDVPLSPRLLETLRVYWRWMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHYAGFRTIPGE
GSMCG

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=240, Percent_Identity=28.75, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 28680; Mature: 28549

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCC
>Mature Secondary Structure 
THLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFQNKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
LNASTVQQYAAVLRFFFNKTLKRHYLLDDIPMPKRHRKLPEILSPDEVALLIGSASNLLH
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHCCCCCEEEEECCHHHHHH
QTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETLRVYWR
HHHHHHHHHHCCHHHHHHHHHCCCCCCHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
WMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHYAGFRTIPG
HCCCCEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCC
EGSMCG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]