| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is cbg-1 [H]
Identifier: 116621778
GI number: 116621778
Start: 3366364
End: 3368916
Strand: Reverse
Name: cbg-1 [H]
Synonym: Acid_2660
Alternate gene names: 116621778
Gene position: 3368916-3366364 (Counterclockwise)
Preceding gene: 116621780
Following gene: 116621777
Centisome position: 33.81
GC content: 64.36
Gene sequence:
>2553_bases ATGCGATTGTCCGGAATTTTCCTGGCGCTTGCCGCCTCCCCGGCCTTAATCGGCCAGACCACGAGCCAGCTCCCTTTCAT GGACCCCGATCTTTCCGCCGAGCGCCGCGCCGCCGACCTGGTGGCCCGCATGACGCTCGACGAGAAAGTCCTGCAAATGC AGAACTCCGCTCCCGCCATTCCCCGCCTCGGCATCCCCGCGTACGATTGGTGGAACGAGGCGCTTCACGGCGTCGCGCGC GCCGGACTCGCCACCGTCTTTCCGCAGGCCATCGGCCTCGCCGCCACCTGGGACGCCACGCTCATGCACCGCATCGCCGA GACCATCTCCACCGAAGCGCGCGCCAAGTACAACGAGGCCATCCGTAACGACGATCACTCCCGGTATCGCGGACTCACCT TCTGGTCGCCGAATATCAATATCTTCCGCGACCCTCGCTGGGGTCGTGGGCAGGAGACCTACGGTGAAGATCCCTTCCTG ACCTCCCGCATGGCCGTCGCCTTCATCAAGGGCATGCAGGGCGAGGATCCCCACTACTACAAAGTAATTGCCACTGCGAA GCACTATGCCGTGCATAGCGGACCCGAGTCTTCCCGTCATCAGTTCGATGTGAAGCCCAGCCCGCGCGACCTCGCCGACA CCTACCTCCCAGCCTTCCGCGCCAGCATCGTGGAGGCCAGGGCCGATTCCCTCATGTGCGCCTACAATCGCGTAGACGGC ATTCCCGCCTGCGCCAGTACCGATCTGCTCGAGAAGCGTCTGCGCGGCGAATGGGGATTCCAGGGTTTCGTAGTCAGCGA TTGCGGCGCCGTCAGCGATATCTTCCGCGGCCATCACTATCAGCCCGACGCTGCCTCGGCCTCCGCCGTCGCGGTCAAGG CTGGCACCGATCTCACCTGCGGCAACGAGTACCGCGCGCTCGTAGACGCGGTCAAAACCGGCCTCATCACCGAGCCGGAA ATCAACCGCTCCCTGGAACGCCTGTTCGTCGCCCGCTTCAAACTCGGCATGTTCGACCCGCCGGAGCGTGTGCCGTTCTC GAACATTCCCTACTCGGAAGTCGATTCCGCCGGCCATCGCAAGATCGCGCTCGAAGCCGCGCGCAAATCCATCGTCCTCC TGAAGAACGATGGCACGCTCCCGCTGAAATCCTCGATCAAAAAGATCGCCGTCATCGGCCCCGCTGCCGACGATGCCGAA GCGCTGCTCGGCAATTACAACGGCTTTTCCTCGCTCCAGGTAACACCGCTCGCCGGTATCGAACATCAGTGGGCCGGCAA AGCCGAAGTCCGGTATGCGCTCGGCGCCAATTACACCGCGCAATCGCAGGCGCCTCTGCCCGCGAGCGTACTGACTCCGC CAACCGGTACCGGGCGCGGCCTGCAGGCCGAGTACTTCGACGGCCCCGAGTTCCAGGGCGAGCCGAAACTGCGCCGCATC GTGTCACTCCCTGAGGTTCAGGCAGGCATCTTGGATCCGGCCGTGGCCGCCGCCTTCCCGAAGCGCGCCTACTCAGTCCG CTGGACCGGCACTCTCCATGCGCCGGTGACAGGGGAATACACGTTCAGTCCCCGCGGCGGTTTCGGCCGGCTCGCTATGC GCATCTTCCTCGAGGAGCGCGAACTGACCGCCGACCCGCCGCCCACCGGACGCGGACGCCCCCTGCTGCTGCACGCGCAA TTAATCGGCGGCCGCGCATATCCGATTCGCGTGGAGTATTCGGCGTCGGGACCCGCGGCCTCGGCCCAAGTGCTCTGGGC TCCCCCGGACGCCCCACTGCTCGCCGCCGCCATCGAAGCAGTTTCGAATGCCGATGTGACGCTCGCCTTCGTGGGCTTGA ACCCCAGCCTAGAAGGCGAGGAAATGCCGGTCAGCGTCCCCGGCTTCCAGGGCGGCGACCGCACCAACCTCGAACTGCCG GAGCCGCAGGAGAAACTGATCGAAGCCGCGATCGCAACCGGTAAGCCCGTCGTGGTCGTGCTCGCCAGCGGCAGCGCCGT CGCCATGAATTTCGCCGCGCAGCATGCCAGTGCGCTGCTCGAAACCTGGTACAACGGCGAGGAGACCGGCACCGCCATCG CCGATACTCTCGCCGGTATCAACAATCCGTCGGGCCGGCTCCCAGTGACCTTCTACAGAAGCGTGGACCAGTTGCCACCA TTCGAGGAGTACGCCATGAAGGGTCGCACCTATCGCTACTTCAACGGCGACGCGCTTTACAGCTTCGGCTTCGGCCTCAG CTATTCGAAGTTCCAATATTCGGCTCTGAAAACCCGGCGCGCGGGATCTGGCACTATCGTCGCCTCGCGCGTCAGGAACG CATCGTCCATCGAGGGCGACGAAGTAGTTCAGCTTTACGTGAATGGCAGCGGCGCTGACGGCGACCCGATCCGGAGCCTT CGCGGATTTCAACGCATCCACCTGCGGCCCGGCGAATCGCGCGAAGTGCACTTCCCTCTCGGCCAGGAAGATCTTACCAA CAGGAAGCTCCACATCAGTATCGGCGGAGGGCAGCCGGTGGGTACGATTCCACACTCGGAAATCGCCATGTAG
Upstream 100 bases:
>100_bases CCAGAACCGAAGCCACGGGCAGCGTGGCCAGAAAGCCGCGGCGTGAAATTGCGCTCATCATGTTAGTTTGATTCTAGAAC TAAACTGACTGGAATCGACT
Downstream 100 bases:
>100_bases CGCGCAAGACTCTTCCTTACGACGATTCTTCGTCCCCGAGTTCACATCCCGGAAAGTGGCAGTGTAAGTGCTACCCCCAG ATGAAATGATTGGACACGAA
Product: glycoside hydrolase family 3 protein
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 850; Mature: 850
Protein sequence:
>850_residues MRLSGIFLALAASPALIGQTTSQLPFMDPDLSAERRAADLVARMTLDEKVLQMQNSAPAIPRLGIPAYDWWNEALHGVAR AGLATVFPQAIGLAATWDATLMHRIAETISTEARAKYNEAIRNDDHSRYRGLTFWSPNINIFRDPRWGRGQETYGEDPFL TSRMAVAFIKGMQGEDPHYYKVIATAKHYAVHSGPESSRHQFDVKPSPRDLADTYLPAFRASIVEARADSLMCAYNRVDG IPACASTDLLEKRLRGEWGFQGFVVSDCGAVSDIFRGHHYQPDAASASAVAVKAGTDLTCGNEYRALVDAVKTGLITEPE INRSLERLFVARFKLGMFDPPERVPFSNIPYSEVDSAGHRKIALEAARKSIVLLKNDGTLPLKSSIKKIAVIGPAADDAE ALLGNYNGFSSLQVTPLAGIEHQWAGKAEVRYALGANYTAQSQAPLPASVLTPPTGTGRGLQAEYFDGPEFQGEPKLRRI VSLPEVQAGILDPAVAAAFPKRAYSVRWTGTLHAPVTGEYTFSPRGGFGRLAMRIFLEERELTADPPPTGRGRPLLLHAQ LIGGRAYPIRVEYSASGPAASAQVLWAPPDAPLLAAAIEAVSNADVTLAFVGLNPSLEGEEMPVSVPGFQGGDRTNLELP EPQEKLIEAAIATGKPVVVVLASGSAVAMNFAAQHASALLETWYNGEETGTAIADTLAGINNPSGRLPVTFYRSVDQLPP FEEYAMKGRTYRYFNGDALYSFGFGLSYSKFQYSALKTRRAGSGTIVASRVRNASSIEGDEVVQLYVNGSGADGDPIRSL RGFQRIHLRPGESREVHFPLGQEDLTNRKLHISIGGGQPVGTIPHSEIAM
Sequences:
>Translated_850_residues MRLSGIFLALAASPALIGQTTSQLPFMDPDLSAERRAADLVARMTLDEKVLQMQNSAPAIPRLGIPAYDWWNEALHGVAR AGLATVFPQAIGLAATWDATLMHRIAETISTEARAKYNEAIRNDDHSRYRGLTFWSPNINIFRDPRWGRGQETYGEDPFL TSRMAVAFIKGMQGEDPHYYKVIATAKHYAVHSGPESSRHQFDVKPSPRDLADTYLPAFRASIVEARADSLMCAYNRVDG IPACASTDLLEKRLRGEWGFQGFVVSDCGAVSDIFRGHHYQPDAASASAVAVKAGTDLTCGNEYRALVDAVKTGLITEPE INRSLERLFVARFKLGMFDPPERVPFSNIPYSEVDSAGHRKIALEAARKSIVLLKNDGTLPLKSSIKKIAVIGPAADDAE ALLGNYNGFSSLQVTPLAGIEHQWAGKAEVRYALGANYTAQSQAPLPASVLTPPTGTGRGLQAEYFDGPEFQGEPKLRRI VSLPEVQAGILDPAVAAAFPKRAYSVRWTGTLHAPVTGEYTFSPRGGFGRLAMRIFLEERELTADPPPTGRGRPLLLHAQ LIGGRAYPIRVEYSASGPAASAQVLWAPPDAPLLAAAIEAVSNADVTLAFVGLNPSLEGEEMPVSVPGFQGGDRTNLELP EPQEKLIEAAIATGKPVVVVLASGSAVAMNFAAQHASALLETWYNGEETGTAIADTLAGINNPSGRLPVTFYRSVDQLPP FEEYAMKGRTYRYFNGDALYSFGFGLSYSKFQYSALKTRRAGSGTIVASRVRNASSIEGDEVVQLYVNGSGADGDPIRSL RGFQRIHLRPGESREVHFPLGQEDLTNRKLHISIGGGQPVGTIPHSEIAM >Mature_850_residues MRLSGIFLALAASPALIGQTTSQLPFMDPDLSAERRAADLVARMTLDEKVLQMQNSAPAIPRLGIPAYDWWNEALHGVAR AGLATVFPQAIGLAATWDATLMHRIAETISTEARAKYNEAIRNDDHSRYRGLTFWSPNINIFRDPRWGRGQETYGEDPFL TSRMAVAFIKGMQGEDPHYYKVIATAKHYAVHSGPESSRHQFDVKPSPRDLADTYLPAFRASIVEARADSLMCAYNRVDG IPACASTDLLEKRLRGEWGFQGFVVSDCGAVSDIFRGHHYQPDAASASAVAVKAGTDLTCGNEYRALVDAVKTGLITEPE INRSLERLFVARFKLGMFDPPERVPFSNIPYSEVDSAGHRKIALEAARKSIVLLKNDGTLPLKSSIKKIAVIGPAADDAE ALLGNYNGFSSLQVTPLAGIEHQWAGKAEVRYALGANYTAQSQAPLPASVLTPPTGTGRGLQAEYFDGPEFQGEPKLRRI VSLPEVQAGILDPAVAAAFPKRAYSVRWTGTLHAPVTGEYTFSPRGGFGRLAMRIFLEERELTADPPPTGRGRPLLLHAQ LIGGRAYPIRVEYSASGPAASAQVLWAPPDAPLLAAAIEAVSNADVTLAFVGLNPSLEGEEMPVSVPGFQGGDRTNLELP EPQEKLIEAAIATGKPVVVVLASGSAVAMNFAAQHASALLETWYNGEETGTAIADTLAGINNPSGRLPVTFYRSVDQLPP FEEYAMKGRTYRYFNGDALYSFGFGLSYSKFQYSALKTRRAGSGTIVASRVRNASSIEGDEVVQLYVNGSGADGDPIRSL RGFQRIHLRPGESREVHFPLGQEDLTNRKLHISIGGGQPVGTIPHSEIAM
Specific function: Involved in modifying a vir-inducing plant signal molecule. Hydrolyzes coniferin but not cellobiose [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=491, Percent_Identity=32.1792260692464, Blast_Score=212, Evalue=1e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 - InterPro: IPR011658 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 91972; Mature: 91972
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLSGIFLALAASPALIGQTTSQLPFMDPDLSAERRAADLVARMTLDEKVLQMQNSAPAI CCCCCEEEEECCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC PRLGIPAYDWWNEALHGVARAGLATVFPQAIGLAATWDATLMHRIAETISTEARAKYNEA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHH IRNDDHSRYRGLTFWSPNINIFRDPRWGRGQETYGEDPFLTSRMAVAFIKGMQGEDPHYY HCCCCCHHHCCEEEECCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEE KVIATAKHYAVHSGPESSRHQFDVKPSPRDLADTYLPAFRASIVEARADSLMCAYNRVDG EEEEEEEHEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCC IPACASTDLLEKRLRGEWGFQGFVVSDCGAVSDIFRGHHYQPDAASASAVAVKAGTDLTC CCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC GNEYRALVDAVKTGLITEPEINRSLERLFVARFKLGMFDPPERVPFSNIPYSEVDSAGHR CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCC KIALEAARKSIVLLKNDGTLPLKSSIKKIAVIGPAADDAEALLGNYNGFSSLQVTPLAGI EEEEEECCCEEEEEECCCCCCHHHCCCEEEEECCCCCCHHHHHCCCCCCCCEEEEECCCC EHQWAGKAEVRYALGANYTAQSQAPLPASVLTPPTGTGRGLQAEYFDGPEFQGEPKLRRI CCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCCHHHHHH VSLPEVQAGILDPAVAAAFPKRAYSVRWTGTLHAPVTGEYTFSPRGGFGRLAMRIFLEER HCCCCHHHCCCCHHHHHHCCCCCEEEEEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHH ELTADPPPTGRGRPLLLHAQLIGGRAYPIRVEYSASGPAASAQVLWAPPDAPLLAAAIEA HCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHH VSNADVTLAFVGLNPSLEGEEMPVSVPGFQGGDRTNLELPEPQEKLIEAAIATGKPVVVV HCCCCEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE LASGSAVAMNFAAQHASALLETWYNGEETGTAIADTLAGINNPSGRLPVTFYRSVDQLPP EECCCEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCHHCCCC FEEYAMKGRTYRYFNGDALYSFGFGLSYSKFQYSALKTRRAGSGTIVASRVRNASSIEGD HHHHHHCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEHHHCCCCCCCCC EVVQLYVNGSGADGDPIRSLRGFQRIHLRPGESREVHFPLGQEDLTNRKLHISIGGGQPV EEEEEEEECCCCCCCHHHHHHCCEEEEECCCCCCEEECCCCCHHCCCCEEEEEECCCCCC GTIPHSEIAM CCCCCHHCCC >Mature Secondary Structure MRLSGIFLALAASPALIGQTTSQLPFMDPDLSAERRAADLVARMTLDEKVLQMQNSAPAI CCCCCEEEEECCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC PRLGIPAYDWWNEALHGVARAGLATVFPQAIGLAATWDATLMHRIAETISTEARAKYNEA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHH IRNDDHSRYRGLTFWSPNINIFRDPRWGRGQETYGEDPFLTSRMAVAFIKGMQGEDPHYY HCCCCCHHHCCEEEECCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEE KVIATAKHYAVHSGPESSRHQFDVKPSPRDLADTYLPAFRASIVEARADSLMCAYNRVDG EEEEEEEHEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCC IPACASTDLLEKRLRGEWGFQGFVVSDCGAVSDIFRGHHYQPDAASASAVAVKAGTDLTC CCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCEEEEECCCCCCC GNEYRALVDAVKTGLITEPEINRSLERLFVARFKLGMFDPPERVPFSNIPYSEVDSAGHR CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCC KIALEAARKSIVLLKNDGTLPLKSSIKKIAVIGPAADDAEALLGNYNGFSSLQVTPLAGI EEEEEECCCEEEEEECCCCCCHHHCCCEEEEECCCCCCHHHHHCCCCCCCCEEEEECCCC EHQWAGKAEVRYALGANYTAQSQAPLPASVLTPPTGTGRGLQAEYFDGPEFQGEPKLRRI CCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCCHHHHHH VSLPEVQAGILDPAVAAAFPKRAYSVRWTGTLHAPVTGEYTFSPRGGFGRLAMRIFLEER HCCCCHHHCCCCHHHHHHCCCCCEEEEEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHH ELTADPPPTGRGRPLLLHAQLIGGRAYPIRVEYSASGPAASAQVLWAPPDAPLLAAAIEA HCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHH VSNADVTLAFVGLNPSLEGEEMPVSVPGFQGGDRTNLELPEPQEKLIEAAIATGKPVVVV HCCCCEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEE LASGSAVAMNFAAQHASALLETWYNGEETGTAIADTLAGINNPSGRLPVTFYRSVDQLPP EECCCEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCHHCCCC FEEYAMKGRTYRYFNGDALYSFGFGLSYSKFQYSALKTRRAGSGTIVASRVRNASSIEGD HHHHHHCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEHHHCCCCCCCCC EVVQLYVNGSGADGDPIRSLRGFQRIHLRPGESREVHFPLGQEDLTNRKLHISIGGGQPV EEEEEEEECCCCCCCHHHHHHCCEEEEECCCCCCEEECCCCCHHCCCCEEEEEECCCCCC GTIPHSEIAM CCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1537792 [H]