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The map label for this gene is ykfC [H]

Identifier: 116621672

GI number: 116621672

Start: 3232417

End: 3233724

Strand: Direct

Name: ykfC [H]

Synonym: Acid_2554

Alternate gene names: 116621672

Gene position: 3232417-3233724 (Clockwise)

Preceding gene: 116621671

Following gene: 116621673

Centisome position: 32.44

GC content: 57.42

Gene sequence:

>1308_bases
ATGCCGGAGAAAGTTTCTCAACTGAGACAGAAGCTGGGCCAAAAGGCCAAGCAGGAGCCGAAGTTCCGGTTTTATGCGTT
ATACGACCGGATCTGGCGGAAGGATGTGTTGGAAACGGCATGGGAACGGGTGCGACAGAATGACGGAGCGCCCGGGGTGG
ACGGGGTCACGATCGAAGAAATTATGAAGACGGACCAAGGGGTGGCGGGATTTCTGGAAGGGATAGAGAACTCGCTACGC
AGGAAGACCTACCGGCCGGAAGCGGTACAGCGGGTCTACATAGAGAAAGAGAACGGGAAACTGAGGCCGTTGGGGATACC
GACGGTGAGAGACCGGGTAGTACAGATGGCAACCCTATTGATCCTGGAGCCGATCTTTGAAGCGGACTTCCTGGATTGCT
CGTATGGGTTCCGACCGGGACGCTCGGCGCACCAGGCTCTGGAGGAGATACGCGGGCATGTAGAAGCCGGGTATCAAGCT
GTGTACGACGCGGACCTGAAGGGGTATTTTGATTCGATACCGCACACGCAACTACTGGCGTGCGTGCGCATGCGGGTGGT
GGACCGATCGGTCCTGAAGTTGATCCGGATGTGGTTAGAGGCGCCGGTAGTGGAGCGGGAGGAAGGGGGCGGAGGGAGTA
AATGGAGCCGGCCAGAGAAAGGGACGCCACAGGGAGGGGTAGCCTCTCCGTTGTTGGCGAACCTGTATCTGCACTGGTTC
GACGCCTTGTTTTACGGGCCGGAAGGGCCGGGTGGAAAGGCCGATGCCAAGCTGGTGCGCTACGCCGATGATTTTGTGGT
GATGGCGAAACAGATGGGGACGGAAACCATCGAGTTTATCGAATCGCGACTGGAAGGAAAGTTCCAGTTGGAGATCAATC
GGGAAAAGACGCGAGTGGTGGACCTGAGGGAAGAAGGGGCAAGCCTGGATTTTCTGAGTCACACATTCCGGAGAGATCGC
GATCTGAAGGGACGGGATCGGAAGTACCTGAATGTGTTTCCGTCGGCGAAGGCGGTCCGGAAGGAGCGGAGGAAGTTGCA
CGAAATGACCGACAGTCATCAGTGCTTCAAGCCAATACCGGTCCTGATCGGAGAGTTGAACCGGCACCGGAAGGGGTGGG
CCAATTACTTCTCATTCGGGTATCCCATCAGCGTTTATTACGAGCTTGATCGATACGTTCAGGGGCGACTGATCCAACAC
CTGCAGCGACGCAGCCAACGACCCTACCGGCCTCCGCAAGGAGAATCCTGGTTGGGGCATCTGAGGCAATTGGGGCTGCT
CCGACTTTCGGAGCTTGTGCATGCCTGA

Upstream 100 bases:

>100_bases
ATCTGTAAGAGGAGGAGAAAACCGCTTGGATGAAAATCCCACTACGGAGACTCAGGCAAACGCAGGAACGGCGAAGCCGG
GAACGGTGAAGGAGCCAAGG

Downstream 100 bases:

>100_bases
GGCGAGAGCTTTCAGGAGAGCCGGATGCGGGAAATCTGCATGTCCGGTTCGACGAGGGGAGGGGCACTTTGCGGTCCCCT
CCTACTCTACCGGCTCGGTG

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MPEKVSQLRQKLGQKAKQEPKFRFYALYDRIWRKDVLETAWERVRQNDGAPGVDGVTIEEIMKTDQGVAGFLEGIENSLR
RKTYRPEAVQRVYIEKENGKLRPLGIPTVRDRVVQMATLLILEPIFEADFLDCSYGFRPGRSAHQALEEIRGHVEAGYQA
VYDADLKGYFDSIPHTQLLACVRMRVVDRSVLKLIRMWLEAPVVEREEGGGGSKWSRPEKGTPQGGVASPLLANLYLHWF
DALFYGPEGPGGKADAKLVRYADDFVVMAKQMGTETIEFIESRLEGKFQLEINREKTRVVDLREEGASLDFLSHTFRRDR
DLKGRDRKYLNVFPSAKAVRKERRKLHEMTDSHQCFKPIPVLIGELNRHRKGWANYFSFGYPISVYYELDRYVQGRLIQH
LQRRSQRPYRPPQGESWLGHLRQLGLLRLSELVHA

Sequences:

>Translated_435_residues
MPEKVSQLRQKLGQKAKQEPKFRFYALYDRIWRKDVLETAWERVRQNDGAPGVDGVTIEEIMKTDQGVAGFLEGIENSLR
RKTYRPEAVQRVYIEKENGKLRPLGIPTVRDRVVQMATLLILEPIFEADFLDCSYGFRPGRSAHQALEEIRGHVEAGYQA
VYDADLKGYFDSIPHTQLLACVRMRVVDRSVLKLIRMWLEAPVVEREEGGGGSKWSRPEKGTPQGGVASPLLANLYLHWF
DALFYGPEGPGGKADAKLVRYADDFVVMAKQMGTETIEFIESRLEGKFQLEINREKTRVVDLREEGASLDFLSHTFRRDR
DLKGRDRKYLNVFPSAKAVRKERRKLHEMTDSHQCFKPIPVLIGELNRHRKGWANYFSFGYPISVYYELDRYVQGRLIQH
LQRRSQRPYRPPQGESWLGHLRQLGLLRLSELVHA
>Mature_434_residues
PEKVSQLRQKLGQKAKQEPKFRFYALYDRIWRKDVLETAWERVRQNDGAPGVDGVTIEEIMKTDQGVAGFLEGIENSLRR
KTYRPEAVQRVYIEKENGKLRPLGIPTVRDRVVQMATLLILEPIFEADFLDCSYGFRPGRSAHQALEEIRGHVEAGYQAV
YDADLKGYFDSIPHTQLLACVRMRVVDRSVLKLIRMWLEAPVVEREEGGGGSKWSRPEKGTPQGGVASPLLANLYLHWFD
ALFYGPEGPGGKADAKLVRYADDFVVMAKQMGTETIEFIESRLEGKFQLEINREKTRVVDLREEGASLDFLSHTFRRDRD
LKGRDRKYLNVFPSAKAVRKERRKLHEMTDSHQCFKPIPVLIGELNRHRKGWANYFSFGYPISVYYELDRYVQGRLIQHL
QRRSQRPYRPPQGESWLGHLRQLGLLRLSELVHA

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=208, Percent_Identity=26.4423076923077, Blast_Score=96, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6226520, Length=207, Percent_Identity=28.5024154589372, Blast_Score=91, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 50316; Mature: 50185

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCC
>Mature Secondary Structure 
PEKVSQLRQKLGQKAKQEPKFRFYALYDRIWRKDVLETAWERVRQNDGAPGVDGVTIEE
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
IMKTDQGVAGFLEGIENSLRRKTYRPEAVQRVYIEKENGKLRPLGIPTVRDRVVQMATLL
HHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHH
ILEPIFEADFLDCSYGFRPGRSAHQALEEIRGHVEAGYQAVYDADLKGYFDSIPHTQLLA
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
CVRMRVVDRSVLKLIRMWLEAPVVEREEGGGGSKWSRPEKGTPQGGVASPLLANLYLHWF
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
DALFYGPEGPGGKADAKLVRYADDFVVMAKQMGTETIEFIESRLEGKFQLEINREKTRVV
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCEEEEEECCCHHHEE
DLREEGASLDFLSHTFRRDRDLKGRDRKYLNVFPSAKAVRKERRKLHEMTDSHQCFKPIP
EHHHCCCCHHHHHHHHHHCCCCCCCCCHHHEECCCHHHHHHHHHHHHHHHCCCHHHCCHH
VLIGELNRHRKGWANYFSFGYPISVYYELDRYVQGRLIQHLQRRSQRPYRPPQGESWLGH
HHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
LRQLGLLRLSELVHA
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]