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The map label for this gene is xerD [C]

Identifier: 116621640

GI number: 116621640

Start: 3197629

End: 3198639

Strand: Direct

Name: xerD [C]

Synonym: Acid_2522

Alternate gene names: 116621640

Gene position: 3197629-3198639 (Clockwise)

Preceding gene: 116621639

Following gene: 116621641

Centisome position: 32.09

GC content: 60.14

Gene sequence:

>1011_bases
ATGCCGAAACACGATTTTCCTACGCTCCCGAAGTTACTGCACTCCTTCTTTCACGAATGGTTGGTCGAGCAGCGAAACGC
CTCTCACCGGACGATACTGGCGTATCGCGATGCCTGGCGCTTATTTCTGCGATTCGTCGCTCAGCGTCGAAACAAGCCGG
TCGCGGCCCTCAGCTTGGAACACCTGACGGGGGCGGATGTGCTGGCCTTCCTTCAGTACATCGAAAAGGAGCGGCGAGCG
TCCGTAAACACGCGCAACTGCCGATTGGCGGCCCTGCGCAGCTTCTTCTCCTTCGTTGTGGAACACGAGCCGCGCGTCGC
ATTGCAGTGCGCCGAAGTGTTGCGCGTGCCGTTCAAGAAGGCAACGCGGCGGGCGACGCGCTACCTGGAATCCGTCGAAG
TTTCGGCCATCCTCTCGCAGCCTGATCGCACCACTGTTGGAGGACAGCGGGACCACGCGCTACTGTCACTGCTTTACAAC
ACCGGGGCTCGCATTCAAGAGGCGCTCGATCTTCGGCCGCAGGACGTTTACTTCAAGTCGCCGGCCCACGTCCGGCTCAT
GGGAAAGGGCCGGAAGGAACGCATCTCGCCCATCTGGCCGGAAACGGCCAATCTGGTAACGGCATTGATACGGAGACAGC
CACGGAAACCTGACGAGCCGATTTTCGTCAATCGATACAGATCGCCGCTCACGGCCTCGGGCTTCCGCTTCCGTTTGCGT
CAGTATGTCGAGGCCGCAGCGAAGACAGTGCCCACCATTTCCAGGAAGCGCGTTACGCCCCATGTATTTAGACATTCGAC
GGCCGTCCACCTTGTCGCCGCGGGCGTGGACGTCACGGTGATTCGCAGCTGGCTGGGGCATGCGCAACTGGATACGACCA
ACCACTACGCGCAGGCGAATCTGGAGACGAAGCGGAAAGCGTTGGAACAGGTCGATCCCAAGTTGCGTCCGGCCAAACCG
CCAAGGTGGAAACGAGATGCCGATCTACTGGCGTGGCTCGATTCGCTGTAA

Upstream 100 bases:

>100_bases
TGGTCTATCTCACCATTACGCAGGAGCTGCTCCAGCATGCCAACGAGCGTTTCCGAACCTCGGAAGCCGAAGTCCTGCAA
GTCATCCAGAGGTCTCATTA

Downstream 100 bases:

>100_bases
GAAATGGATTATTGTGAGGTTGATGTCCAAGTATGCCCTCTTGCAGCTCCTGTTTATGGCAAGCAGCTTCGGGCAGAATT
GCATCCAGTACGGAACCGCG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MPKHDFPTLPKLLHSFFHEWLVEQRNASHRTILAYRDAWRLFLRFVAQRRNKPVAALSLEHLTGADVLAFLQYIEKERRA
SVNTRNCRLAALRSFFSFVVEHEPRVALQCAEVLRVPFKKATRRATRYLESVEVSAILSQPDRTTVGGQRDHALLSLLYN
TGARIQEALDLRPQDVYFKSPAHVRLMGKGRKERISPIWPETANLVTALIRRQPRKPDEPIFVNRYRSPLTASGFRFRLR
QYVEAAAKTVPTISRKRVTPHVFRHSTAVHLVAAGVDVTVIRSWLGHAQLDTTNHYAQANLETKRKALEQVDPKLRPAKP
PRWKRDADLLAWLDSL

Sequences:

>Translated_336_residues
MPKHDFPTLPKLLHSFFHEWLVEQRNASHRTILAYRDAWRLFLRFVAQRRNKPVAALSLEHLTGADVLAFLQYIEKERRA
SVNTRNCRLAALRSFFSFVVEHEPRVALQCAEVLRVPFKKATRRATRYLESVEVSAILSQPDRTTVGGQRDHALLSLLYN
TGARIQEALDLRPQDVYFKSPAHVRLMGKGRKERISPIWPETANLVTALIRRQPRKPDEPIFVNRYRSPLTASGFRFRLR
QYVEAAAKTVPTISRKRVTPHVFRHSTAVHLVAAGVDVTVIRSWLGHAQLDTTNHYAQANLETKRKALEQVDPKLRPAKP
PRWKRDADLLAWLDSL
>Mature_335_residues
PKHDFPTLPKLLHSFFHEWLVEQRNASHRTILAYRDAWRLFLRFVAQRRNKPVAALSLEHLTGADVLAFLQYIEKERRAS
VNTRNCRLAALRSFFSFVVEHEPRVALQCAEVLRVPFKKATRRATRYLESVEVSAILSQPDRTTVGGQRDHALLSLLYNT
GARIQEALDLRPQDVYFKSPAHVRLMGKGRKERISPIWPETANLVTALIRRQPRKPDEPIFVNRYRSPLTASGFRFRLRQ
YVEAAAKTVPTISRKRVTPHVFRHSTAVHLVAAGVDVTVIRSWLGHAQLDTTNHYAQANLETKRKALEQVDPKLRPAKPP
RWKRDADLLAWLDSL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=318, Percent_Identity=27.6729559748428, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790244, Length=306, Percent_Identity=23.8562091503268, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38748; Mature: 38617

Theoretical pI: Translated: 11.31; Mature: 11.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKHDFPTLPKLLHSFFHEWLVEQRNASHRTILAYRDAWRLFLRFVAQRRNKPVAALSLE
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEHH
HLTGADVLAFLQYIEKERRASVNTRNCRLAALRSFFSFVVEHEPRVALQCAEVLRVPFKK
HHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ATRRATRYLESVEVSAILSQPDRTTVGGQRDHALLSLLYNTGARIQEALDLRPQDVYFKS
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCEEECC
PAHVRLMGKGRKERISPIWPETANLVTALIRRQPRKPDEPIFVNRYRSPLTASGFRFRLR
CCCEEEECCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHH
QYVEAAAKTVPTISRKRVTPHVFRHSTAVHLVAAGVDVTVIRSWLGHAQLDTTNHYAQAN
HHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHCC
LETKRKALEQVDPKLRPAKPPRWKRDADLLAWLDSL
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
PKHDFPTLPKLLHSFFHEWLVEQRNASHRTILAYRDAWRLFLRFVAQRRNKPVAALSLE
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEHH
HLTGADVLAFLQYIEKERRASVNTRNCRLAALRSFFSFVVEHEPRVALQCAEVLRVPFKK
HHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ATRRATRYLESVEVSAILSQPDRTTVGGQRDHALLSLLYNTGARIQEALDLRPQDVYFKS
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCEEECC
PAHVRLMGKGRKERISPIWPETANLVTALIRRQPRKPDEPIFVNRYRSPLTASGFRFRLR
CCCEEEECCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHH
QYVEAAAKTVPTISRKRVTPHVFRHSTAVHLVAAGVDVTVIRSWLGHAQLDTTNHYAQAN
HHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHCC
LETKRKALEQVDPKLRPAKPPRWKRDADLLAWLDSL
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]