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The map label for this gene is ydaC [H]

Identifier: 116621590

GI number: 116621590

Start: 3142321

End: 3142974

Strand: Direct

Name: ydaC [H]

Synonym: Acid_2472

Alternate gene names: 116621590

Gene position: 3142321-3142974 (Clockwise)

Preceding gene: 116621589

Following gene: 116621592

Centisome position: 31.53

GC content: 62.08

Gene sequence:

>654_bases
ATGAAGCCGCTCCTTTACATTCTGACGGCGGCCGCGGTGCTCTACCTTCTCAACCAGGTCCGCAAACCGACCAGGTGGAC
CGGACGCTTCTTCGTCTGGATGATGAATCTCTCCCACTCCGCCCTGACCGACTGGGGATTGACCCACATAACGATCGGCC
GGAACTTTACCATTCTGGACGTGGGCTGCGGCGGAGGCAGAACCATCGGGAAACTCTCCGCCCAGGCCATTGAGGGCATG
GTTCACGGCGTGGATTATGCAAACGGCAGCGTGGCCGCATCGCGCGCCGCCATGAAGTCCGGCCGCGTCGCCATCACGCA
GGCCTCGGTATCGCAGCTGCCTTTTCCCGATAACACGTTCGATCTGGTGACCGCCGTCGAGACCCAGTATTACTGGCCGG
ACCTGGTACGCGATATGCAGGAGATCCTCCGCGTTCTCAAGCCCGGCGGCACGCTGCTCGTCATCGCCGAAAGCTACGCG
AAGGGCAAGCACGGGACGAAGTTCCTGAACTTCGCGCGGCTGAGCGTGGAGGAACAACGGGAGCGGTTTTCGACATCCGG
CTACCAGCGGATTCAGATCTTCGAGGAACGCAAGCAGGGCTGGCTTTGCGCGACAGGCATCAAGGCCGGCGGCGGGCGAT
CACTCCCCCGCTAA

Upstream 100 bases:

>100_bases
CGATGTCTTCCTCACCCTATGGAAGAATGCCGACCCGGACGTACCCGTCCTCATAGAAGCCGGCGCGGAATACGCGAAGT
TATGGGTCCCCCGTTAGACG

Downstream 100 bases:

>100_bases
CTTCGCGGCCAGCACGTCCACCTTCTCGATCACCGGAGGCTTGCTGAAGAGCGTCGGAGCCTTGCCGATCAGCGCCGCGG
CCACGCGTCCGGAAAGGTGC

Product: type 11 methyltransferase

Products: S-Adenosyl-L-Homocysteine; @OCTA02.txt*2- Polyprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol!; Menaquinol. [C]

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MKPLLYILTAAAVLYLLNQVRKPTRWTGRFFVWMMNLSHSALTDWGLTHITIGRNFTILDVGCGGGRTIGKLSAQAIEGM
VHGVDYANGSVAASRAAMKSGRVAITQASVSQLPFPDNTFDLVTAVETQYYWPDLVRDMQEILRVLKPGGTLLVIAESYA
KGKHGTKFLNFARLSVEEQRERFSTSGYQRIQIFEERKQGWLCATGIKAGGGRSLPR

Sequences:

>Translated_217_residues
MKPLLYILTAAAVLYLLNQVRKPTRWTGRFFVWMMNLSHSALTDWGLTHITIGRNFTILDVGCGGGRTIGKLSAQAIEGM
VHGVDYANGSVAASRAAMKSGRVAITQASVSQLPFPDNTFDLVTAVETQYYWPDLVRDMQEILRVLKPGGTLLVIAESYA
KGKHGTKFLNFARLSVEEQRERFSTSGYQRIQIFEERKQGWLCATGIKAGGGRSLPR
>Mature_217_residues
MKPLLYILTAAAVLYLLNQVRKPTRWTGRFFVWMMNLSHSALTDWGLTHITIGRNFTILDVGCGGGRTIGKLSAQAIEGM
VHGVDYANGSVAASRAAMKSGRVAITQASVSQLPFPDNTFDLVTAVETQYYWPDLVRDMQEILRVLKPGGTLLVIAESYA
KGKHGTKFLNFARLSVEEQRERFSTSGYQRIQIFEERKQGWLCATGIKAGGGRSLPR

Specific function: Methyltransferase Required For The Conversion Of Dimethylmenaquinone (Dmkh2) To Menaquinone (Mkh2) And The Conversion Of 2-Polyprenyl-6-Methoxy-1,4-Benzoquinol (Ddmqh2) To 2-Polyprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol (Dmqh2). [C]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 24042; Mature: 24042

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLLYILTAAAVLYLLNQVRKPTRWTGRFFVWMMNLSHSALTDWGLTHITIGRNFTILD
CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHCCCCEEEEECCCEEEEE
VGCGGGRTIGKLSAQAIEGMVHGVDYANGSVAASRAAMKSGRVAITQASVSQLPFPDNTF
ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECHHHHCCCCCCCH
DLVTAVETQYYWPDLVRDMQEILRVLKPGGTLLVIAESYAKGKHGTKFLNFARLSVEEQR
HHHEEHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
ERFSTSGYQRIQIFEERKQGWLCATGIKAGGGRSLPR
HHHCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MKPLLYILTAAAVLYLLNQVRKPTRWTGRFFVWMMNLSHSALTDWGLTHITIGRNFTILD
CCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHCCCCEEEEECCCEEEEE
VGCGGGRTIGKLSAQAIEGMVHGVDYANGSVAASRAAMKSGRVAITQASVSQLPFPDNTF
ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEEECHHHHCCCCCCCH
DLVTAVETQYYWPDLVRDMQEILRVLKPGGTLLVIAESYAKGKHGTKFLNFARLSVEEQR
HHHEEHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
ERFSTSGYQRIQIFEERKQGWLCATGIKAGGGRSLPR
HHHCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; 2-Polyprenyl-6- Methoxy-1,4-Benzoquinol; Demethylmenaquinol [C]

Specific reaction: S-Adenosyl-L-Methionine + @OCTA02.txt*2-Polyprenyl-6- Methoxy-1,4-Benzoquinol! = S-Adenosyl-L-Homocysteine + 2- Polyprenyl-3-Methyl-6-Methoxy -1,4-Benzoquinol S-Adenosyl-L-Methionine + Demethylmenaquinol = S-Adenosyl-L-Homocysteine + Menaquinol. [C]

General reaction: Transferring one-carbon groups; Methyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]