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The map label for this gene is rpoE [H]

Identifier: 116621312

GI number: 116621312

Start: 2811655

End: 2812197

Strand: Reverse

Name: rpoE [H]

Synonym: Acid_2193

Alternate gene names: 116621312

Gene position: 2812197-2811655 (Counterclockwise)

Preceding gene: 116621313

Following gene: 116621311

Centisome position: 28.22

GC content: 60.04

Gene sequence:

>543_bases
GTGAGCGTTTCGTTCTACATGGGTTTGGACATCGATCTGCAGGCCTTGATGGCTCGCTATCAACAGGGCGATTCGGAAGC
GGCTACCGCCCTGGTCCATCGTCTGAGCCCTCAGTTGCACCGCTTTTTCCTGGTGAAGGTCATGAGCCGGCCTCATGCCG
ACGACCTTCTCCAGGAAACGTGGATGCGCATCCATCAGGTACGCCATACTTACCGGTGCGGCCAGCCCGTGCTCCCGTGG
CTCTACGCGATCGCGCGAAATATTCGCGTGGACCACTACCGGAAATCATCCCGCGGAGAAGGCCGCGAACAACCGCTGGA
ATCGAAGCACGACATCGCGGCCAGTGAGCCAGGCCAGAACCGGACTCCGGACTTCGAGGCACTGCTTGCTACACTACCGG
AGAGCCAGCGCGAAGTGATCGCGATGTTGAAGATCTCCGGCATGTCGCTGGAAGAAGTGGCGCGGGCCACCGCATGCAGC
GTCGGGAGCGTGAAGCAGAAGGTACATCGCGCCTATGAGAAATTGAGGAAGGCGCTCTCGTGA

Upstream 100 bases:

>100_bases
CGTCCAACGTCTCCCTATTCGATATCGATTCCGAAGGCGAGCTCACACTCCGCTTCGCGGTGAAGATCGCAGGCCCCATC
AACGGTTCGGCGATAATTGG

Downstream 100 bases:

>100_bases
GAGACAGAGACATCGACGATTTCCTCAACCGCGGCGCCGGCCCGCCTCCGGAGGTGGACCCGGACTTACTGGACCGGCTA
TCGGCCACCGTTCACTCCGG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSVSFYMGLDIDLQALMARYQQGDSEAATALVHRLSPQLHRFFLVKVMSRPHADDLLQETWMRIHQVRHTYRCGQPVLPW
LYAIARNIRVDHYRKSSRGEGREQPLESKHDIAASEPGQNRTPDFEALLATLPESQREVIAMLKISGMSLEEVARATACS
VGSVKQKVHRAYEKLRKALS

Sequences:

>Translated_180_residues
MSVSFYMGLDIDLQALMARYQQGDSEAATALVHRLSPQLHRFFLVKVMSRPHADDLLQETWMRIHQVRHTYRCGQPVLPW
LYAIARNIRVDHYRKSSRGEGREQPLESKHDIAASEPGQNRTPDFEALLATLPESQREVIAMLKISGMSLEEVARATACS
VGSVKQKVHRAYEKLRKALS
>Mature_179_residues
SVSFYMGLDIDLQALMARYQQGDSEAATALVHRLSPQLHRFFLVKVMSRPHADDLLQETWMRIHQVRHTYRCGQPVLPWL
YAIARNIRVDHYRKSSRGEGREQPLESKHDIAASEPGQNRTPDFEALLATLPESQREVIAMLKISGMSLEEVARATACSV
GSVKQKVHRAYEKLRKALS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20526; Mature: 20395

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSFYMGLDIDLQALMARYQQGDSEAATALVHRLSPQLHRFFLVKVMSRPHADDLLQET
CCCEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
WMRIHQVRHTYRCGQPVLPWLYAIARNIRVDHYRKSSRGEGREQPLESKHDIAASEPGQN
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCC
RTPDFEALLATLPESQREVIAMLKISGMSLEEVARATACSVGSVKQKVHRAYEKLRKALS
CCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SVSFYMGLDIDLQALMARYQQGDSEAATALVHRLSPQLHRFFLVKVMSRPHADDLLQET
CCEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
WMRIHQVRHTYRCGQPVLPWLYAIARNIRVDHYRKSSRGEGREQPLESKHDIAASEPGQN
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCC
RTPDFEALLATLPESQREVIAMLKISGMSLEEVARATACSVGSVKQKVHRAYEKLRKALS
CCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]