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The map label for this gene is ycjC [C]

Identifier: 116621234

GI number: 116621234

Start: 2704358

End: 2705035

Strand: Direct

Name: ycjC [C]

Synonym: Acid_2115

Alternate gene names: 116621234

Gene position: 2704358-2705035 (Clockwise)

Preceding gene: 116621230

Following gene: 116621235

Centisome position: 27.14

GC content: 61.21

Gene sequence:

>678_bases
ATGAGCAGCGATGAATTTAGTAGAGCTGAAATTAAGTATCATGATTTCAGTACTGCTGATATGAGATCGCGAGACACCGA
AAGCAGCGAAGAAACTATCGGCCGCGTCCTTTCCGCCTACGATATCGGGCGCAAGCTCCGGCAACTCCGCCTGCGCAAGA
AAATCGCACTCGTCGATCTCGGCAGGCACACAGGGCTCTCCGCCTCGATGCTCTCCCAGTTGGAGAACGGCAAACTCGTC
CCCACCCTGGCAACGCTCGCGCGAATCTCGATGGTCTTCGACGTCGGACTGGAACACTTCTTCGGCAATCGGCGCGGCCA
GAAGACGTTCGCCCTCGTCCGCGCCGCCGAGCGCCTCCGTTTCCCCGAACGTGCCGACGCGCCCAAGCCCGCCTACTTTT
TCGAGTGCCTCGCCTTTGCCGCGCAGAGCAAGGGACTACAAGCCTACGTCGCCGAATTCCCACCCCGCCGGGCCGCCGAC
GTCCAGGAGCACTTCCACGAAGGCGCCGAACTCATCTTCGTCCTCGAAGGCTCCCTCGCAATCCGCTTCGAAGGCGAAGA
CCACATCCTCCAGCAAGGCGACAGCGTCTATTTCGACTCCTCGGAACCCCACTCCTATCGCGGCGTCGCCGAAGCACCCG
CTCGCGCCATCGTCGTCACCACGCCTCCACGCCTCTAA

Upstream 100 bases:

>100_bases
AATTCGCCGTCCGTAAGATTTTGCATTTTCCCCCACTCCTCCTGAGTCCAATTCGTGTCGCTATGGCCAGCCTACCAACG
AAGTTCCGGAATTTTAAATA

Downstream 100 bases:

>100_bases
GCGGGGTGAAACTACCGCCGTCATCGACGCCCCACGCCGCCCATGCCCACGCGAGATAATAGAGAGGTATGCGGCGGTTT
CTATGGCTTGCGATGCTCCC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; MerR Family Transcriptional Regulator; Transcriptional Regulator MerR Family; Cupin 2 Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; HTH-Type Transcriptional Regulator; Transcriptional Regulatory Protein; Cupin 2 Barrel Domain-Containing Protein; Transcriptional Regulator Merr Family; Transcriptional Regulator Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain Protein; Helix-Turn-Helix Transcriptional Regulator PuuR; Transcriptional Regulator-Like Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Epoxidase; Helix-Turn-Helix/Cupin Domain Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcriptional Regulator Cro/CI Family Protein

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MSSDEFSRAEIKYHDFSTADMRSRDTESSEETIGRVLSAYDIGRKLRQLRLRKKIALVDLGRHTGLSASMLSQLENGKLV
PTLATLARISMVFDVGLEHFFGNRRGQKTFALVRAAERLRFPERADAPKPAYFFECLAFAAQSKGLQAYVAEFPPRRAAD
VQEHFHEGAELIFVLEGSLAIRFEGEDHILQQGDSVYFDSSEPHSYRGVAEAPARAIVVTTPPRL

Sequences:

>Translated_225_residues
MSSDEFSRAEIKYHDFSTADMRSRDTESSEETIGRVLSAYDIGRKLRQLRLRKKIALVDLGRHTGLSASMLSQLENGKLV
PTLATLARISMVFDVGLEHFFGNRRGQKTFALVRAAERLRFPERADAPKPAYFFECLAFAAQSKGLQAYVAEFPPRRAAD
VQEHFHEGAELIFVLEGSLAIRFEGEDHILQQGDSVYFDSSEPHSYRGVAEAPARAIVVTTPPRL
>Mature_224_residues
SSDEFSRAEIKYHDFSTADMRSRDTESSEETIGRVLSAYDIGRKLRQLRLRKKIALVDLGRHTGLSASMLSQLENGKLVP
TLATLARISMVFDVGLEHFFGNRRGQKTFALVRAAERLRFPERADAPKPAYFFECLAFAAQSKGLQAYVAEFPPRRAADV
QEHFHEGAELIFVLEGSLAIRFEGEDHILQQGDSVYFDSSEPHSYRGVAEAPARAIVVTTPPRL

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25234; Mature: 25103

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSDEFSRAEIKYHDFSTADMRSRDTESSEETIGRVLSAYDIGRKLRQLRLRKKIALVDL
CCCCCCCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
GRHTGLSASMLSQLENGKLVPTLATLARISMVFDVGLEHFFGNRRGQKTFALVRAAERLR
CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
FPERADAPKPAYFFECLAFAAQSKGLQAYVAEFPPRRAADVQEHFHEGAELIFVLEGSLA
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCEE
IRFEGEDHILQQGDSVYFDSSEPHSYRGVAEAPARAIVVTTPPRL
EEECCCHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCC
>Mature Secondary Structure 
SSDEFSRAEIKYHDFSTADMRSRDTESSEETIGRVLSAYDIGRKLRQLRLRKKIALVDL
CCCCCCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
GRHTGLSASMLSQLENGKLVPTLATLARISMVFDVGLEHFFGNRRGQKTFALVRAAERLR
CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
FPERADAPKPAYFFECLAFAAQSKGLQAYVAEFPPRRAADVQEHFHEGAELIFVLEGSLA
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEECCEE
IRFEGEDHILQQGDSVYFDSSEPHSYRGVAEAPARAIVVTTPPRL
EEECCCHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA