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The map label for this gene is abfA [H]

Identifier: 116621213

GI number: 116621213

Start: 2670725

End: 2672809

Strand: Reverse

Name: abfA [H]

Synonym: Acid_2094

Alternate gene names: 116621213

Gene position: 2672809-2670725 (Counterclockwise)

Preceding gene: 116621214

Following gene: 116621212

Centisome position: 26.82

GC content: 59.76

Gene sequence:

>2085_bases
GTGCGAGTAACCCTCTTCGCCGCGATGCTCGCGACAGGCTTACTAGCGCCGGGCGCCACCGCCCAGACCGAGTCCCGGAG
AGTCGCCGTCACGATCGACGCAACGAAACCCGGTACTCCGATCTCGCCTTACATCTACGGCCAGTTCATCGAACACATCG
GCGACCTGGTGAACCGCAGCGTGTGGGCCGAGATGCTCGACGACCGCAAATTCTACTATCCGATCACCTCCAATCCCGGA
GACCAGCGGCCTGTCCGGGGCCGCCGCGCCAATCGCTGGATGCCTTTGGGCCCAGCCTCGTCGATCAAAATGGATCGCGA
GCACCCCTGGGTGGGCGAGCAATCGCCTGTGATCGCGCTGGCGGGTGAGGAAAAGCGCGGCATTTCACAAACAGGGCTCG
TATTGCGAAAGGGTAAGGCATACATAGGCCGGATTGTGCTTGCCGGCAGTGCCGGCGCTAAGGTTGCCGTCAGCCTGATT
TGGGGCGCCGATGCCGCACGCCGTCAATCGATGCTACTCACTACCTCCGAAGCCTACAGAACATACTCCCTGAAGTTTGT
CGCAGATGCCGACGCGGATGCCGGAAGCATCGAAATCACCGGAACCGGTCAGGGCTCGGTCCGGGTTGGCGCTGTCTCGC
TGATGCCGGCGGACAACATCCACGGCTTCCGGCCCGATACCGTCGCGCTGCTGAAGGCGCAACGCTCCGGCATGCTGCGG
TTTCCGGGAGGGAACTTCCTCTCCAACCACGATTGGCACGACGCCATCGGCGATCCGGACAAGCGTCCGCCCAAATGGGA
TTATGTCTGGTCGGCGGTGCAACCGAACGATGTGGGCACCGACGAATTCCTGACGCTTTGCGAGCTGCTCGGTGTGGACC
CATTCATCAGCGTTAATGCAGGTTTCGGCGATGCCCGCTCGGCCGCCGAAGAAGTTGAATATGTCAACGGGTCGGTCGAT
ACGCCGATGGGCAAGTTGCGCGCTGCCAATGGGCATCCCACGCCGTATCACGTCAAGTGGTGGGGCATCGGCAACGAGAT
GTACGGCTCCTGGCAGTTCGGCCACATGGCACTCAGCCAGTACGTCATCAAGCACAATCTCTTCGCCAAGGCAATGCGCA
AAGTGGATCCGTCCATAACGCTTCTCGCTACCGGCGCCACGCCTGACGAAATGACGATCTATGGACTATCGCTGGCAATC
ACCGGCAAACTGATTCCGGACTATGGATCGGATGCGGACTGGACAGGCGGCCTGTTCACGCACTGCTTCGAGAACATCGA
CGTGATGTCGGAGCACTTCTACTCCTATGCCGGGCAGAGGTTCGATGCCTCGGCCATTAAGCCCGGCAAGTTCAACCGCG
CCGATTACATGATCCGATTGGATGAACCCCTGGTGGAATGGGCTCGTCGTCCCGCCAACCGCGTCCGCGGAAAGATCGAA
GCGTACGACGAGTATCGCAAGCGCATCCCTGCGCTCCAGGAAAAACGCATTCCCATGGCCCTTGACGAGTGGGCCTACAG
CGGATCGGGAAACAATCTGAAAGCGAGCCTGGCGAATGCCATGGTGCTGCACGAGATGTTCCGCCACAGCGATCTGATCC
AGATGGCTGGACACACCATGGCGACGGCCGCGATCGACTACACCGCCACGGAAGCCGCGCTCAATACTACCGGACTCCTT
TTCAAGTTCTACCGCGATCACTTCGGCACGGTCGCGCTGCCGGTGGAGGGCAATTCCCCCGTACCGCCGCCGCTTTACCC
GGTGGGAGGCGACCAGCCAAAGGTTAATGCAGGCAGCCCGACATATCCCCTGGATGTAAGCGCGGCCACAAGCGCTGATG
GCAGGCAATTGACCATCTCGGTAATCAATGCCACCGAATCGGCGCAAACATTCGACCTCAATATCAACGGCATGACATTG
AAAAGTCAGGGGGCGCTCTGGCTGTTGACAGGCCCCGATCTGAACGCCGCCAATGGGCTCAACCGGCAGGACATTCATAT
CAGGCGATCGGAAGTAAATAGTTTCCAAGGCTCGGTGACGATTGCCCCGATAAGCATTAGCATTTACGAGTTCCAAAGAC
AATAG

Upstream 100 bases:

>100_bases
GGCGCGGGAGTGGTTCCGTGCTCCAACATCCGGCCGGCTCCGCGGAAATAGACTCCCACGCGAACCGCGGGTGTAGAATC
GATGCTTCCAAGGAGGAGAC

Downstream 100 bases:

>100_bases
ACCGCGGCTTCCCGGCGACTCGGCCCACCGAGGTGAGCCAATAAATACAAATCCGTTTCGGATATAGGACAGCCCTATTG
ACTCCGCAGTCTATCTTGCA

Product: alpha-N-arabinofuranosidase

Products: NA

Alternate protein names: Arabinosidase 1 [H]

Number of amino acids: Translated: 694; Mature: 694

Protein sequence:

>694_residues
MRVTLFAAMLATGLLAPGATAQTESRRVAVTIDATKPGTPISPYIYGQFIEHIGDLVNRSVWAEMLDDRKFYYPITSNPG
DQRPVRGRRANRWMPLGPASSIKMDREHPWVGEQSPVIALAGEEKRGISQTGLVLRKGKAYIGRIVLAGSAGAKVAVSLI
WGADAARRQSMLLTTSEAYRTYSLKFVADADADAGSIEITGTGQGSVRVGAVSLMPADNIHGFRPDTVALLKAQRSGMLR
FPGGNFLSNHDWHDAIGDPDKRPPKWDYVWSAVQPNDVGTDEFLTLCELLGVDPFISVNAGFGDARSAAEEVEYVNGSVD
TPMGKLRAANGHPTPYHVKWWGIGNEMYGSWQFGHMALSQYVIKHNLFAKAMRKVDPSITLLATGATPDEMTIYGLSLAI
TGKLIPDYGSDADWTGGLFTHCFENIDVMSEHFYSYAGQRFDASAIKPGKFNRADYMIRLDEPLVEWARRPANRVRGKIE
AYDEYRKRIPALQEKRIPMALDEWAYSGSGNNLKASLANAMVLHEMFRHSDLIQMAGHTMATAAIDYTATEAALNTTGLL
FKFYRDHFGTVALPVEGNSPVPPPLYPVGGDQPKVNAGSPTYPLDVSAATSADGRQLTISVINATESAQTFDLNINGMTL
KSQGALWLLTGPDLNAANGLNRQDIHIRRSEVNSFQGSVTIAPISISIYEFQRQ

Sequences:

>Translated_694_residues
MRVTLFAAMLATGLLAPGATAQTESRRVAVTIDATKPGTPISPYIYGQFIEHIGDLVNRSVWAEMLDDRKFYYPITSNPG
DQRPVRGRRANRWMPLGPASSIKMDREHPWVGEQSPVIALAGEEKRGISQTGLVLRKGKAYIGRIVLAGSAGAKVAVSLI
WGADAARRQSMLLTTSEAYRTYSLKFVADADADAGSIEITGTGQGSVRVGAVSLMPADNIHGFRPDTVALLKAQRSGMLR
FPGGNFLSNHDWHDAIGDPDKRPPKWDYVWSAVQPNDVGTDEFLTLCELLGVDPFISVNAGFGDARSAAEEVEYVNGSVD
TPMGKLRAANGHPTPYHVKWWGIGNEMYGSWQFGHMALSQYVIKHNLFAKAMRKVDPSITLLATGATPDEMTIYGLSLAI
TGKLIPDYGSDADWTGGLFTHCFENIDVMSEHFYSYAGQRFDASAIKPGKFNRADYMIRLDEPLVEWARRPANRVRGKIE
AYDEYRKRIPALQEKRIPMALDEWAYSGSGNNLKASLANAMVLHEMFRHSDLIQMAGHTMATAAIDYTATEAALNTTGLL
FKFYRDHFGTVALPVEGNSPVPPPLYPVGGDQPKVNAGSPTYPLDVSAATSADGRQLTISVINATESAQTFDLNINGMTL
KSQGALWLLTGPDLNAANGLNRQDIHIRRSEVNSFQGSVTIAPISISIYEFQRQ
>Mature_694_residues
MRVTLFAAMLATGLLAPGATAQTESRRVAVTIDATKPGTPISPYIYGQFIEHIGDLVNRSVWAEMLDDRKFYYPITSNPG
DQRPVRGRRANRWMPLGPASSIKMDREHPWVGEQSPVIALAGEEKRGISQTGLVLRKGKAYIGRIVLAGSAGAKVAVSLI
WGADAARRQSMLLTTSEAYRTYSLKFVADADADAGSIEITGTGQGSVRVGAVSLMPADNIHGFRPDTVALLKAQRSGMLR
FPGGNFLSNHDWHDAIGDPDKRPPKWDYVWSAVQPNDVGTDEFLTLCELLGVDPFISVNAGFGDARSAAEEVEYVNGSVD
TPMGKLRAANGHPTPYHVKWWGIGNEMYGSWQFGHMALSQYVIKHNLFAKAMRKVDPSITLLATGATPDEMTIYGLSLAI
TGKLIPDYGSDADWTGGLFTHCFENIDVMSEHFYSYAGQRFDASAIKPGKFNRADYMIRLDEPLVEWARRPANRVRGKIE
AYDEYRKRIPALQEKRIPMALDEWAYSGSGNNLKASLANAMVLHEMFRHSDLIQMAGHTMATAAIDYTATEAALNTTGLL
FKFYRDHFGTVALPVEGNSPVPPPLYPVGGDQPKVNAGSPTYPLDVSAATSADGRQLTISVINATESAQTFDLNINGMTL
KSQGALWLLTGPDLNAANGLNRQDIHIRRSEVNSFQGSVTIAPISISIYEFQRQ

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 75893; Mature: 75893

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVTLFAAMLATGLLAPGATAQTESRRVAVTIDATKPGTPISPYIYGQFIEHIGDLVNRS
CEEEHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
VWAEMLDDRKFYYPITSNPGDQRPVRGRRANRWMPLGPASSIKMDREHPWVGEQSPVIAL
HHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
AGEEKRGISQTGLVLRKGKAYIGRIVLAGSAGAKVAVSLIWGADAARRQSMLLTTSEAYR
ECCCCCCCCHHCEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHCCEEEEEECCCCE
TYSLKFVADADADAGSIEITGTGQGSVRVGAVSLMPADNIHGFRPDTVALLKAQRSGMLR
EEEEEEEEECCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCEEE
FPGGNFLSNHDWHDAIGDPDKRPPKWDYVWSAVQPNDVGTDEFLTLCELLGVDPFISVNA
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEC
GFGDARSAAEEVEYVNGSVDTPMGKLRAANGHPTPYHVKWWGIGNEMYGSWQFGHMALSQ
CCCCHHHHHHHHHHHCCCCCCCHHHEEECCCCCCCEEEEEEECCCCCCCCEEHHHHHHHH
YVIKHNLFAKAMRKVDPSITLLATGATPDEMTIYGLSLAITGKLIPDYGSDADWTGGLFT
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCHHHH
HCFENIDVMSEHFYSYAGQRFDASAIKPGKFNRADYMIRLDEPLVEWARRPANRVRGKIE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCHHHHCCCHH
AYDEYRKRIPALQEKRIPMALDEWAYSGSGNNLKASLANAMVLHEMFRHSDLIQMAGHTM
HHHHHHHHCCCHHHCCCCEEHHHHEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCC
ATAAIDYTATEAALNTTGLLFKFYRDHFGTVALPVEGNSPVPPPLYPVGGDQPKVNAGSP
EEEEEECCHHHHHHCHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCCCCCCCCCC
TYPLDVSAATSADGRQLTISVINATESAQTFDLNINGMTLKSQGALWLLTGPDLNAANGL
CCCEECCCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEECCCCEEEEECCCCCCCCCC
NRQDIHIRRSEVNSFQGSVTIAPISISIYEFQRQ
CCCCEEEEHHHCCCCCCEEEEEEEEEEEEEECCC
>Mature Secondary Structure
MRVTLFAAMLATGLLAPGATAQTESRRVAVTIDATKPGTPISPYIYGQFIEHIGDLVNRS
CEEEHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
VWAEMLDDRKFYYPITSNPGDQRPVRGRRANRWMPLGPASSIKMDREHPWVGEQSPVIAL
HHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
AGEEKRGISQTGLVLRKGKAYIGRIVLAGSAGAKVAVSLIWGADAARRQSMLLTTSEAYR
ECCCCCCCCHHCEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHCCEEEEEECCCCE
TYSLKFVADADADAGSIEITGTGQGSVRVGAVSLMPADNIHGFRPDTVALLKAQRSGMLR
EEEEEEEEECCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHCCEEE
FPGGNFLSNHDWHDAIGDPDKRPPKWDYVWSAVQPNDVGTDEFLTLCELLGVDPFISVNA
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEC
GFGDARSAAEEVEYVNGSVDTPMGKLRAANGHPTPYHVKWWGIGNEMYGSWQFGHMALSQ
CCCCHHHHHHHHHHHCCCCCCCHHHEEECCCCCCCEEEEEEECCCCCCCCEEHHHHHHHH
YVIKHNLFAKAMRKVDPSITLLATGATPDEMTIYGLSLAITGKLIPDYGSDADWTGGLFT
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCHHHH
HCFENIDVMSEHFYSYAGQRFDASAIKPGKFNRADYMIRLDEPLVEWARRPANRVRGKIE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHCCHHHHCCCHH
AYDEYRKRIPALQEKRIPMALDEWAYSGSGNNLKASLANAMVLHEMFRHSDLIQMAGHTM
HHHHHHHHCCCHHHCCCCEEHHHHEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCC
ATAAIDYTATEAALNTTGLLFKFYRDHFGTVALPVEGNSPVPPPLYPVGGDQPKVNAGSP
EEEEEECCHHHHHHCHHHHHHHHHHHCCCEEEEEECCCCCCCCCEECCCCCCCCCCCCCC
TYPLDVSAATSADGRQLTISVINATESAQTFDLNINGMTLKSQGALWLLTGPDLNAANGL
CCCEECCCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEECCCCEEEEECCCCCCCCCC
NRQDIHIRRSEVNSFQGSVTIAPISISIYEFQRQ
CCCCEEEEHHHCCCCCCEEEEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]