| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is pbpG [H]
Identifier: 116621123
GI number: 116621123
Start: 2532737
End: 2535361
Strand: Reverse
Name: pbpG [H]
Synonym: Acid_2004
Alternate gene names: 116621123
Gene position: 2535361-2532737 (Counterclockwise)
Preceding gene: 116621124
Following gene: 116621122
Centisome position: 25.44
GC content: 62.06
Gene sequence:
>2625_bases ATGAGAGAATTAGAAGTAGTGGCCAAACCCCAAGAGAAGAATCAGAAGATGAAGGTGCGGGTGCCGCGCGGCAGCGGCCT GACCCGGATCCTGCTCGGACCCACCGGGCGCATCTTCATGATTTTGTTCTCCCTGTTCACGATTCTCGGATTGGGGACGT TCACCTGGTTTTACGCGAAATACGCGCATGTGATCGATGAAAAGCTGCGCGCGGGCGTGTTCGCGAATTCGGCGAAGATT TTCGCGGCGCCGCAATCGGTGGCGGTGGGGGACGCGACCAGCCCCGTCGAAATCGCGGCCGAGCTGCGCCGCTCCGGCTA TACCGAATCGCGCGGCAATCCGGTGGGCTACTACCAGCTGCATCCGAATTCGATCGACATCTATCCGCAGGCGGACTCGT ATTTCGATCAGGAGCCGGGCATCCTGCGCTTCTCGGCCGGCAAGATTTCGCAGATTGTTTCGCTGGGCGATAACACGGCG CGCAGCCAGTACCAGTTGGAGCCGCAGCTAATTCAGGCGATCTCGGGCACCGCGCGCGAGAAGCGCCGCATGGTGAAGTT TCACGACATCCCGAAGATTCTGGTGGAGGCGGTGACTTCGGCCGAAGACAAGCGCTTTTTCCAGCACTCCGGCTTCGACC CGATCCGCATCATCAAGGCCGCGTACGTGGATATCAAGGAAGGCCGCAAAGATCAGGGTGCTTCCACGTTGAGCATGCAG ACGGCGCGCATGTTCTTCCTCACGCAGGACAAGCGCTGGACGCGCAAACTGGCCGAAGTCATCATCACGCTGCAGCTGGA GCAAAAGCTCTCCAAGGAAGACATTTTCGAGTATTACGCCAACCAGGTGGACCTGGGATGGCGCGGCACCTTTCACATCG TAGGGTTCGGCCAGGCGTCGGAAGCGTACCTGGGGAAAGAGCTGAACTCGATCACGCTACCCGAGGCCGCCGAAATCGCG GGAATGATCCAGCGGCCGGGCTACTTCGACCCGTTCCGCCATCCGGAGCGGTTGAAAGACCGGCGCAACATCGTGCTGCA GCTGATGCGGCAGAACGGGATCATCAGCGATCGCGACTACGCGCTGGCGATCGATACGCCGCTCACGGTGACGAAGAGCG GGTCTACCAGCGTGGAGGCCCCGTACTTCGTGGACATGGTGAACGACACTTTGCAGAGCAAGTTCCAGGATGCCGATTTC CAGTCCAATGCGTTCCGGATTTACACCACGATCGACATGCATCTGCAGCGCGCCGCGGTAGAGGCGGTGAGGCTGGGTAT GATCGGCGTGGACGAGCAGATCAAGAAGCAGCGGCGCTTCCGCGGGCAGACTCCGCCGGTTCCGCAGGTAGCGCTGGTCG CCATCGATCCGCATACGGGCGAGGTGAAGGCGCTGGTCGGCGGACGCAATTACGGGCTCAGCCAGTTGAACCACACGCTC GCCAAGCGCCAGCCCGGTTCGATCTTCAAGCCTTTCGTCTATGCGACGGCGCTGGACACCGCGGTGGAAGGCGGTCCCAA GGTGCTCACCGCATCGACCATCGTGGTGGATGAGCCGACCACGTTCTACTTCGATCCCAGCCAGCCGCCCTACCAGCCGA GCAACTTCGAGCACAAGTTCATGGGTCCGGTCACGCTGCGCGACGCGCTGGCGCATTCGTTGAATGTGGCGACGGTGAAG GTGGGGCAGATGGTGGGGTTCGACAACGTAGTCGCGATGGCCAACCGCGCGGGGATGAATTACAAGATCCAGCCGACTCC GGCGGTAGCGCTCGGCGCTTATGAAATCACTCCGCTGGAGGCAGTTGGCGCCTACACGATCTTCGCCAACGGCGGCGATT ACATCAAGCCCAGCTTCCTTTCCATGGTGCGCGCGCAGGATGGCAAGGTGGTCTACAAGAACAAGGTGGAAGAGAAGCAG GTGCTGGATCCGCGTGTGGCCTACCTGACCACGAACCTGATGGAAGAGGTGTTGCGCAGCGGTACCGCGGCGGGCGTCCG CGCGCGCTACAAGCTGACCATGCCCGCGGCCGGCAAGACCGGAACCAGCCATGACGGCTGGTTCGCCGGTTACACGAGTG AACTCTTGTGCGTTGTCTGGGTGGGGTTGGACGACAACAAGACGATCGATCTGGAAGGCGCGCACTCCGCGGCGCCGATT TGGGCGGAGTTCATGAAGCGAGCGCTCGAGTATCGGGAGTACCGAGATGCAAAGCCGTTCAAGGCGCCGGCGGGCATCGT TTCGATGACCATCGACCCCGAATCGGGCATGCCTGCCGCGCCCGCCTGCCCGAAAACGCGTAACGAAGTATACATTGCGG GCACTGAGCCTGTGGGCGTTTGCCCGCTGCATGGAGGGCGTGGGGGCGTGACCACGAACTCCGGCTGGGACACCACGCCG CCGCCGGTCCCTGCACCGGCGGGGAGCGGCTCGCCAGTGATCACCGGGTCGCAAGGAGACGGCCAGGTTCCGGCCGATTC CGTGGCGCGGAGAGCAGCGCGACAGGCGGCTGCGGGGCGCCAGGCGAACACGCCGCCACCGGCTCCGGAGACACCCACCA AAGATAACAGCAAGAAGCCGGAGAAGAAGGGGATTTTCCAGCGCATATTTGGTGTGTTTAAATAG
Upstream 100 bases:
>100_bases GCGCTACTTTGTGCGCGTAAATTTCCCGGGATACACGGTGGACCTGCATTTCTACCCGGGCGCCGGCAGCCGCTGACCTA CCGCGCTTGTCACGCTCATC
Downstream 100 bases:
>100_bases CTCCAGGGGGCCTTATGGTTAACCGACCTCGGTCCATGTTACTGGCGGCCAGTTTGGGGGCCGTTCTCTCATTCGGACAA ACCGGTGTAGTTACACCCAA
Product: 1A family penicillin-binding protein
Products: [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n+1-; $diphosphoundecaprenol; undecaprenyl diphosphate
Alternate protein names: PBP-2D; PBP2d [H]
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MRELEVVAKPQEKNQKMKVRVPRGSGLTRILLGPTGRIFMILFSLFTILGLGTFTWFYAKYAHVIDEKLRAGVFANSAKI FAAPQSVAVGDATSPVEIAAELRRSGYTESRGNPVGYYQLHPNSIDIYPQADSYFDQEPGILRFSAGKISQIVSLGDNTA RSQYQLEPQLIQAISGTAREKRRMVKFHDIPKILVEAVTSAEDKRFFQHSGFDPIRIIKAAYVDIKEGRKDQGASTLSMQ TARMFFLTQDKRWTRKLAEVIITLQLEQKLSKEDIFEYYANQVDLGWRGTFHIVGFGQASEAYLGKELNSITLPEAAEIA GMIQRPGYFDPFRHPERLKDRRNIVLQLMRQNGIISDRDYALAIDTPLTVTKSGSTSVEAPYFVDMVNDTLQSKFQDADF QSNAFRIYTTIDMHLQRAAVEAVRLGMIGVDEQIKKQRRFRGQTPPVPQVALVAIDPHTGEVKALVGGRNYGLSQLNHTL AKRQPGSIFKPFVYATALDTAVEGGPKVLTASTIVVDEPTTFYFDPSQPPYQPSNFEHKFMGPVTLRDALAHSLNVATVK VGQMVGFDNVVAMANRAGMNYKIQPTPAVALGAYEITPLEAVGAYTIFANGGDYIKPSFLSMVRAQDGKVVYKNKVEEKQ VLDPRVAYLTTNLMEEVLRSGTAAGVRARYKLTMPAAGKTGTSHDGWFAGYTSELLCVVWVGLDDNKTIDLEGAHSAAPI WAEFMKRALEYREYRDAKPFKAPAGIVSMTIDPESGMPAAPACPKTRNEVYIAGTEPVGVCPLHGGRGGVTTNSGWDTTP PPVPAPAGSGSPVITGSQGDGQVPADSVARRAARQAAAGRQANTPPPAPETPTKDNSKKPEKKGIFQRIFGVFK
Sequences:
>Translated_874_residues MRELEVVAKPQEKNQKMKVRVPRGSGLTRILLGPTGRIFMILFSLFTILGLGTFTWFYAKYAHVIDEKLRAGVFANSAKI FAAPQSVAVGDATSPVEIAAELRRSGYTESRGNPVGYYQLHPNSIDIYPQADSYFDQEPGILRFSAGKISQIVSLGDNTA RSQYQLEPQLIQAISGTAREKRRMVKFHDIPKILVEAVTSAEDKRFFQHSGFDPIRIIKAAYVDIKEGRKDQGASTLSMQ TARMFFLTQDKRWTRKLAEVIITLQLEQKLSKEDIFEYYANQVDLGWRGTFHIVGFGQASEAYLGKELNSITLPEAAEIA GMIQRPGYFDPFRHPERLKDRRNIVLQLMRQNGIISDRDYALAIDTPLTVTKSGSTSVEAPYFVDMVNDTLQSKFQDADF QSNAFRIYTTIDMHLQRAAVEAVRLGMIGVDEQIKKQRRFRGQTPPVPQVALVAIDPHTGEVKALVGGRNYGLSQLNHTL AKRQPGSIFKPFVYATALDTAVEGGPKVLTASTIVVDEPTTFYFDPSQPPYQPSNFEHKFMGPVTLRDALAHSLNVATVK VGQMVGFDNVVAMANRAGMNYKIQPTPAVALGAYEITPLEAVGAYTIFANGGDYIKPSFLSMVRAQDGKVVYKNKVEEKQ VLDPRVAYLTTNLMEEVLRSGTAAGVRARYKLTMPAAGKTGTSHDGWFAGYTSELLCVVWVGLDDNKTIDLEGAHSAAPI WAEFMKRALEYREYRDAKPFKAPAGIVSMTIDPESGMPAAPACPKTRNEVYIAGTEPVGVCPLHGGRGGVTTNSGWDTTP PPVPAPAGSGSPVITGSQGDGQVPADSVARRAARQAAAGRQANTPPPAPETPTKDNSKKPEKKGIFQRIFGVFK >Mature_874_residues MRELEVVAKPQEKNQKMKVRVPRGSGLTRILLGPTGRIFMILFSLFTILGLGTFTWFYAKYAHVIDEKLRAGVFANSAKI FAAPQSVAVGDATSPVEIAAELRRSGYTESRGNPVGYYQLHPNSIDIYPQADSYFDQEPGILRFSAGKISQIVSLGDNTA RSQYQLEPQLIQAISGTAREKRRMVKFHDIPKILVEAVTSAEDKRFFQHSGFDPIRIIKAAYVDIKEGRKDQGASTLSMQ TARMFFLTQDKRWTRKLAEVIITLQLEQKLSKEDIFEYYANQVDLGWRGTFHIVGFGQASEAYLGKELNSITLPEAAEIA GMIQRPGYFDPFRHPERLKDRRNIVLQLMRQNGIISDRDYALAIDTPLTVTKSGSTSVEAPYFVDMVNDTLQSKFQDADF QSNAFRIYTTIDMHLQRAAVEAVRLGMIGVDEQIKKQRRFRGQTPPVPQVALVAIDPHTGEVKALVGGRNYGLSQLNHTL AKRQPGSIFKPFVYATALDTAVEGGPKVLTASTIVVDEPTTFYFDPSQPPYQPSNFEHKFMGPVTLRDALAHSLNVATVK VGQMVGFDNVVAMANRAGMNYKIQPTPAVALGAYEITPLEAVGAYTIFANGGDYIKPSFLSMVRAQDGKVVYKNKVEEKQ VLDPRVAYLTTNLMEEVLRSGTAAGVRARYKLTMPAAGKTGTSHDGWFAGYTSELLCVVWVGLDDNKTIDLEGAHSAAPI WAEFMKRALEYREYRDAKPFKAPAGIVSMTIDPESGMPAAPACPKTRNEVYIAGTEPVGVCPLHGGRGGVTTNSGWDTTP PPVPAPAGSGSPVITGSQGDGQVPADSVARRAARQAAAGRQANTPPPAPETPTKDNSKKPEKKGIFQRIFGVFK
Specific function: Involved in the polymerization and cross-linking of spore peptidoglycan. May be required for synthesis of the spore germ cell wall, the first layer of peptidoglycan synthesized on the surface of the inner forespore membrane [H]
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=698, Percent_Identity=31.3753581661891, Blast_Score=297, Evalue=2e-81, Organism=Escherichia coli, GI1788867, Length=551, Percent_Identity=27.4047186932849, Blast_Score=175, Evalue=1e-44, Organism=Escherichia coli, GI87082258, Length=293, Percent_Identity=32.0819112627986, Blast_Score=167, Evalue=4e-42, Organism=Escherichia coli, GI1789601, Length=157, Percent_Identity=34.3949044585987, Blast_Score=77, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.1.129; 3.4.-.-
Molecular weight: Translated: 96016; Mature: 96016
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: PS00228 TUBULIN_B_AUTOREG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRELEVVAKPQEKNQKMKVRVPRGSGLTRILLGPTGRIFMILFSLFTILGLGTFTWFYAK CCCCCEEECCCCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH YAHVIDEKLRAGVFANSAKIFAAPQSVAVGDATSPVEIAAELRRSGYTESRGNPVGYYQL HHHHHHHHHHHCEEECCCEEEECCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEE HPNSIDIYPQADSYFDQEPGILRFSAGKISQIVSLGDNTARSQYQLEPQLIQAISGTARE CCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCEEECCHHHHHHHHCCHHH KRRMVKFHDIPKILVEAVTSAEDKRFFQHSGFDPIRIIKAAYVDIKEGRKDQGASTLSMQ HHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEHE TARMFFLTQDKRWTRKLAEVIITLQLEQKLSKEDIFEYYANQVDLGWRGTFHIVGFGQAS EEEEEEEECCHHHHHHHHHHHHHEEHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEECCCC EAYLGKELNSITLPEAAEIAGMIQRPGYFDPFRHPERLKDRRNIVLQLMRQNGIISDRDY HHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE ALAIDTPLTVTKSGSTSVEAPYFVDMVNDTLQSKFQDADFQSNAFRIYTTIDMHLQRAAV EEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHH EAVRLGMIGVDEQIKKQRRFRGQTPPVPQVALVAIDPHTGEVKALVGGRNYGLSQLNHTL HHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCHHHHHHHH AKRQPGSIFKPFVYATALDTAVEGGPKVLTASTIVVDEPTTFYFDPSQPPYQPSNFEHKF HHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCEE MGPVTLRDALAHSLNVATVKVGQMVGFDNVVAMANRAGMNYKIQPTPAVALGAYEITPLE CCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEECCEEECCHH AVGAYTIFANGGDYIKPSFLSMVRAQDGKVVYKNKVEEKQVLDPRVAYLTTNLMEEVLRS HCCEEEEEECCCCCCCHHHHHHHHCCCCCEEECCCCCHHHHCCCHHHHHHHHHHHHHHHC GTAAGVRARYKLTMPAAGKTGTSHDGWFAGYTSELLCVVWVGLDDNKTIDLEGAHSAAPI CCCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCEEEECCCCCCCHH WAEFMKRALEYREYRDAKPFKAPAGIVSMTIDPESGMPAAPACPKTRNEVYIAGTEPVGV HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEE CPLHGGRGGVTTNSGWDTTPPPVPAPAGSGSPVITGSQGDGQVPADSVARRAARQAAAGR EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCC QANTPPPAPETPTKDNSKKPEKKGIFQRIFGVFK CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MRELEVVAKPQEKNQKMKVRVPRGSGLTRILLGPTGRIFMILFSLFTILGLGTFTWFYAK CCCCCEEECCCCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH YAHVIDEKLRAGVFANSAKIFAAPQSVAVGDATSPVEIAAELRRSGYTESRGNPVGYYQL HHHHHHHHHHHCEEECCCEEEECCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEE HPNSIDIYPQADSYFDQEPGILRFSAGKISQIVSLGDNTARSQYQLEPQLIQAISGTARE CCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCEEECCHHHHHHHHCCHHH KRRMVKFHDIPKILVEAVTSAEDKRFFQHSGFDPIRIIKAAYVDIKEGRKDQGASTLSMQ HHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEHE TARMFFLTQDKRWTRKLAEVIITLQLEQKLSKEDIFEYYANQVDLGWRGTFHIVGFGQAS EEEEEEEECCHHHHHHHHHHHHHEEHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEECCCC EAYLGKELNSITLPEAAEIAGMIQRPGYFDPFRHPERLKDRRNIVLQLMRQNGIISDRDY HHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE ALAIDTPLTVTKSGSTSVEAPYFVDMVNDTLQSKFQDADFQSNAFRIYTTIDMHLQRAAV EEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHH EAVRLGMIGVDEQIKKQRRFRGQTPPVPQVALVAIDPHTGEVKALVGGRNYGLSQLNHTL HHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCHHHHHHHH AKRQPGSIFKPFVYATALDTAVEGGPKVLTASTIVVDEPTTFYFDPSQPPYQPSNFEHKF HHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEECCCCCCCCCCCCCCEE MGPVTLRDALAHSLNVATVKVGQMVGFDNVVAMANRAGMNYKIQPTPAVALGAYEITPLE CCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEECCEEECCHH AVGAYTIFANGGDYIKPSFLSMVRAQDGKVVYKNKVEEKQVLDPRVAYLTTNLMEEVLRS HCCEEEEEECCCCCCCHHHHHHHHCCCCCEEECCCCCHHHHCCCHHHHHHHHHHHHHHHC GTAAGVRARYKLTMPAAGKTGTSHDGWFAGYTSELLCVVWVGLDDNKTIDLEGAHSAAPI CCCCCEEEEEEEECCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCEEEECCCCCCCHH WAEFMKRALEYREYRDAKPFKAPAGIVSMTIDPESGMPAAPACPKTRNEVYIAGTEPVGV HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEE CPLHGGRGGVTTNSGWDTTPPPVPAPAGSGSPVITGSQGDGQVPADSVARRAARQAAAGR EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCC QANTPPPAPETPTKDNSKKPEKKGIFQRIFGVFK CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n-; $diphosphoundecaprenol; GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-; $diphosphoundecaprenol
Specific reaction: [GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n- $diphosphoundecaprenol + GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu- $L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol = [GlcNAc-(1->4)- $Mur2Ac(oyl-L-Ala-gamma-
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]