Click here to switch to the map view.

The map label for this gene is 116620926

Identifier: 116620926

GI number: 116620926

Start: 2246780

End: 2247817

Strand: Reverse

Name: 116620926

Synonym: Acid_1807

Alternate gene names: NA

Gene position: 2247817-2246780 (Counterclockwise)

Preceding gene: 116620927

Following gene: 116620925

Centisome position: 22.56

GC content: 60.79

Gene sequence:

>1038_bases
GTGCTGTCACCGAAAGATTCCCCGCTCGGCAAACAACTCAGTCAATACGTGTGCCTTCGCATCACGCGCCTGGACGATGT
GGATGTCGGTCTGTTCGAGCGCGATTGGAACAACACCATCTATTTCTTCGCATTCAACGCCGATGAGAAGATTTACTTTC
GTTACGGCGGCCGTGATTCGGCATCGCCCGATACTTATCTCAACGTGGACAGCCTCGAGTTGGCGCTTCGGCAAGGGCTC
CAAATGCACGAGCAGTATCTGGGCGGCGCGCTGAAATTGCCGGAACGGCCCAAAGCCCTGTTCCCGCGCGAGATTCCACT
CCTGGTGCAGCGGACTTTTGCGCAGCGCCAGTGCGTGGAGTGCCACCTGATCGGCGATTTCCAGAACCTGCAGCGCCAAC
AGGATGGTGTGCTCGATAAACTGACCCACCTCTACCGCTCGCCCGACATCAAGACCATCGGCATCGAGCTCGATGTGCCC
AAGGGGCTGGTGGTGAAGCAGGCGACCGGCGCCGCACAGGCCGCCGGAATGAAGGCCGGCGACCGGATCGTCACCTGGAA
CGGCGCTCCCGTGGTCACCTTCGGCGATCTGCAGTATCAGTACGACAAAGTGGACCGCAAGGCCGCCAAGCTGACCGTGC
AGGTGGATCGCGGCGAGAGTCTTCAGATCACGCTGCCGCCGCGTTGGTGGTGGACCGATCTGCGCTTCCGCCAGTCCAGC
GTGGACCCGCGGCTCGATTTCGAAGATCGCCCGCTCACCGCGGAGGAGAAGAGCAAACTCGGGCTTCCGCCCGACGGCAT
CGCGAGCCAGGTGAAGTACGTTTCCGAGTTCGCCAAAATCCGCAAGACGCACGACTTGCGCACCGGCGACATCATTTATG
CGGTAGACGGCGTGGAGCGCGACGAGATCGCCAATACGGCCGAGCTGTTCCTCAAGCTGCGGAAGAAGGCCGGCGAATCG
GCTACCCTGGGAGTGATTCGCAGCGGGCAGCGGATTCAGATGCCGCTGCACAGCTACCAGTTGAGTTTTCGAAAATGA

Upstream 100 bases:

>100_bases
TCGCGAGGCCCTGCAGCAGGCGAAGCAGACGCGCAAGCCGATCTTCGTGGAGTTTCGCTGCGAGGCTTGAATCGCCGGTA
GAGTTTTTGACGCACAGGTC

Downstream 100 bases:

>100_bases
GCAGACTTCGGGCAATCCTGATTGGGGTGAGTGTCGTGCTGAGCGCGATGGCGGCAGATTGGACGCCGCCGGTGGAAGTG
CGGCACGAAGACGAGCTGTC

Product: PDZ/DHR/GLGF domain-containing protein

Products: NA

Alternate protein names: MucD- A Secreted Serine Proteinase; PDZ/DHR/GLGF Domain-Containing Protein

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MLSPKDSPLGKQLSQYVCLRITRLDDVDVGLFERDWNNTIYFFAFNADEKIYFRYGGRDSASPDTYLNVDSLELALRQGL
QMHEQYLGGALKLPERPKALFPREIPLLVQRTFAQRQCVECHLIGDFQNLQRQQDGVLDKLTHLYRSPDIKTIGIELDVP
KGLVVKQATGAAQAAGMKAGDRIVTWNGAPVVTFGDLQYQYDKVDRKAAKLTVQVDRGESLQITLPPRWWWTDLRFRQSS
VDPRLDFEDRPLTAEEKSKLGLPPDGIASQVKYVSEFAKIRKTHDLRTGDIIYAVDGVERDEIANTAELFLKLRKKAGES
ATLGVIRSGQRIQMPLHSYQLSFRK

Sequences:

>Translated_345_residues
MLSPKDSPLGKQLSQYVCLRITRLDDVDVGLFERDWNNTIYFFAFNADEKIYFRYGGRDSASPDTYLNVDSLELALRQGL
QMHEQYLGGALKLPERPKALFPREIPLLVQRTFAQRQCVECHLIGDFQNLQRQQDGVLDKLTHLYRSPDIKTIGIELDVP
KGLVVKQATGAAQAAGMKAGDRIVTWNGAPVVTFGDLQYQYDKVDRKAAKLTVQVDRGESLQITLPPRWWWTDLRFRQSS
VDPRLDFEDRPLTAEEKSKLGLPPDGIASQVKYVSEFAKIRKTHDLRTGDIIYAVDGVERDEIANTAELFLKLRKKAGES
ATLGVIRSGQRIQMPLHSYQLSFRK
>Mature_345_residues
MLSPKDSPLGKQLSQYVCLRITRLDDVDVGLFERDWNNTIYFFAFNADEKIYFRYGGRDSASPDTYLNVDSLELALRQGL
QMHEQYLGGALKLPERPKALFPREIPLLVQRTFAQRQCVECHLIGDFQNLQRQQDGVLDKLTHLYRSPDIKTIGIELDVP
KGLVVKQATGAAQAAGMKAGDRIVTWNGAPVVTFGDLQYQYDKVDRKAAKLTVQVDRGESLQITLPPRWWWTDLRFRQSS
VDPRLDFEDRPLTAEEKSKLGLPPDGIASQVKYVSEFAKIRKTHDLRTGDIIYAVDGVERDEIANTAELFLKLRKKAGES
ATLGVIRSGQRIQMPLHSYQLSFRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39244; Mature: 39244

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSPKDSPLGKQLSQYVCLRITRLDDVDVGLFERDWNNTIYFFAFNADEKIYFRYGGRDS
CCCCCCCCHHHHHHHHHHEEEEECCCCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCC
ASPDTYLNVDSLELALRQGLQMHEQYLGGALKLPERPKALFPREIPLLVQRTFAQRQCVE
CCCCCEEEHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCEE
CHLIGDFQNLQRQQDGVLDKLTHLYRSPDIKTIGIELDVPKGLVVKQATGAAQAAGMKAG
EEEECCHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCCHHHCCCCCC
DRIVTWNGAPVVTFGDLQYQYDKVDRKAAKLTVQVDRGESLQITLPPRWWWTDLRFRQSS
CEEEEECCCEEEEECCCEEEHHHHCCCEEEEEEEECCCCEEEEEECCCEEECHHEEHHCC
VDPRLDFEDRPLTAEEKSKLGLPPDGIASQVKYVSEFAKIRKTHDLRTGDIIYAVDGVER
CCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH
DEIANTAELFLKLRKKAGESATLGVIRSGQRIQMPLHSYQLSFRK
HHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCHHHEEEECCC
>Mature Secondary Structure
MLSPKDSPLGKQLSQYVCLRITRLDDVDVGLFERDWNNTIYFFAFNADEKIYFRYGGRDS
CCCCCCCCHHHHHHHHHHEEEEECCCCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCC
ASPDTYLNVDSLELALRQGLQMHEQYLGGALKLPERPKALFPREIPLLVQRTFAQRQCVE
CCCCCEEEHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCEE
CHLIGDFQNLQRQQDGVLDKLTHLYRSPDIKTIGIELDVPKGLVVKQATGAAQAAGMKAG
EEEECCHHHHHHHHCCHHHHHHHHHCCCCCEEEEEEEECCCCEEEEECCCCHHHCCCCCC
DRIVTWNGAPVVTFGDLQYQYDKVDRKAAKLTVQVDRGESLQITLPPRWWWTDLRFRQSS
CEEEEECCCEEEEECCCEEEHHHHCCCEEEEEEEECCCCEEEEEECCCEEECHHEEHHCC
VDPRLDFEDRPLTAEEKSKLGLPPDGIASQVKYVSEFAKIRKTHDLRTGDIIYAVDGVER
CCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH
DEIANTAELFLKLRKKAGESATLGVIRSGQRIQMPLHSYQLSFRK
HHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEECCHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA