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The map label for this gene is yddE [C]

Identifier: 116620918

GI number: 116620918

Start: 2237820

End: 2238614

Strand: Reverse

Name: yddE [C]

Synonym: Acid_1799

Alternate gene names: 116620918

Gene position: 2238614-2237820 (Counterclockwise)

Preceding gene: 116620920

Following gene: 116620912

Centisome position: 22.46

GC content: 64.53

Gene sequence:

>795_bases
ATGGCCATTCGAATTGTCCAGGTAGATGCGTTTACCGACCGAGCCTTTGCGGGAAATCCCGCCGCCGTTTGCGTCCTTCG
AGAAGCTCCCGACGAACAGTGGATGCGAGATGTAGCCAGAGAGATGAATCTTTCCGAGACAGCATTCCTGGTGCCAAAGG
ACGATGGCTACCAACTTCGCTGGCTGACGCCGGCGGTGGAGGTGGACCTTTGCGGCCATGCCACCGTGGCATCCGCGCAC
GTACTGTGGCAGGACGGTCACTTGCCGGCGGACCGGCAGGCGCGCTTCTACACGCGCAGCGGGAAGCTGACGGCGGACCG
GCGCGGCGATTGGATCGAGCTGGATTTCCCGGCCAAGGTCGCGGTGGCGGCAGAACCTCCGCCCGAGCTGCTGCCCGCGC
TCGGCCTCTCGGAGGCGAAGTTCGTCGGCAAGAATGCCTTCGATTACCTGGTGGAAGTGGATTCGGAAGCGACGCTGCGC
GGACTCTCGCCGGACCACTCCATGCTGCGCAAACTGCCCGTGCGGGGCATTATCGTGACGGCCCGCGCGTCCACCCCGGG
ATATGATTTCATGTCGCGATTTTTCGCGCCTGGGTCAGGCATCGATGAGGATCCCGTGACCGGTTCGGCACACACGGCGC
TTGGGCCGTACTGGGCCGAGCGGCTGGGCAAGCAGGAGTTCACGGCATTCCAGGCGTCGGCGCGCGGCGGCGTTGTCCGG
GTGAGACTGGAAGGCGATCGCGTGAAGTTGGGCGGGCAGGCGGTCACGGTGATGACGGGCGAGCTGTTGACTTAG

Upstream 100 bases:

>100_bases
GAACAACTTGGCGAACCTCACCAGCATTCGTTAATAAGACTCCGTAACAGGGCGTTTAGTTTCGAGGTGTTTCTCTCAAA
ATGCGCTACTCTGCAAGATT

Downstream 100 bases:

>100_bases
AGCCGGTCGATCTCGATGCTCTCCAAGACGCGTTTCGGGGCGCCGGTACGCGCGGCCTTGAGCATGGCCCGGCCGATCTG
CTCGGTGCTGGTCACGTACC

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MAIRIVQVDAFTDRAFAGNPAAVCVLREAPDEQWMRDVAREMNLSETAFLVPKDDGYQLRWLTPAVEVDLCGHATVASAH
VLWQDGHLPADRQARFYTRSGKLTADRRGDWIELDFPAKVAVAAEPPPELLPALGLSEAKFVGKNAFDYLVEVDSEATLR
GLSPDHSMLRKLPVRGIIVTARASTPGYDFMSRFFAPGSGIDEDPVTGSAHTALGPYWAERLGKQEFTAFQASARGGVVR
VRLEGDRVKLGGQAVTVMTGELLT

Sequences:

>Translated_264_residues
MAIRIVQVDAFTDRAFAGNPAAVCVLREAPDEQWMRDVAREMNLSETAFLVPKDDGYQLRWLTPAVEVDLCGHATVASAH
VLWQDGHLPADRQARFYTRSGKLTADRRGDWIELDFPAKVAVAAEPPPELLPALGLSEAKFVGKNAFDYLVEVDSEATLR
GLSPDHSMLRKLPVRGIIVTARASTPGYDFMSRFFAPGSGIDEDPVTGSAHTALGPYWAERLGKQEFTAFQASARGGVVR
VRLEGDRVKLGGQAVTVMTGELLT
>Mature_263_residues
AIRIVQVDAFTDRAFAGNPAAVCVLREAPDEQWMRDVAREMNLSETAFLVPKDDGYQLRWLTPAVEVDLCGHATVASAHV
LWQDGHLPADRQARFYTRSGKLTADRRGDWIELDFPAKVAVAAEPPPELLPALGLSEAKFVGKNAFDYLVEVDSEATLRG
LSPDHSMLRKLPVRGIIVTARASTPGYDFMSRFFAPGSGIDEDPVTGSAHTALGPYWAERLGKQEFTAFQASARGGVVRV
RLEGDRVKLGGQAVTVMTGELLT

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=291, Percent_Identity=41.5807560137457, Blast_Score=173, Evalue=1e-43,
Organism=Homo sapiens, GI74316009, Length=254, Percent_Identity=41.3385826771654, Blast_Score=152, Evalue=4e-37,
Organism=Escherichia coli, GI1787737, Length=255, Percent_Identity=29.0196078431373, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17542160, Length=307, Percent_Identity=38.7622149837134, Blast_Score=182, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI17542154, Length=307, Percent_Identity=38.7622149837134, Blast_Score=182, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI17542158, Length=307, Percent_Identity=32.8990228013029, Blast_Score=138, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI17542152, Length=307, Percent_Identity=32.8990228013029, Blast_Score=138, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 28810; Mature: 28679

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIRIVQVDAFTDRAFAGNPAAVCVLREAPDEQWMRDVAREMNLSETAFLVPKDDGYQLR
CEEEEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEE
WLTPAVEVDLCGHATVASAHVLWQDGHLPADRQARFYTRSGKLTADRRGDWIELDFPAKV
EECCEEEEEECCCCEEEEEEEEEECCCCCCCCCEEEEEECCCEEECCCCCEEEEECCCEE
AVAAEPPPELLPALGLSEAKFVGKNAFDYLVEVDSEATLRGLSPDHSMLRKLPVRGIIVT
EEECCCCHHHHHHCCCCCHHHHCCCCEEEEEEECCCCEEECCCCCHHHHHHCCCCEEEEE
ARASTPGYDFMSRFFAPGSGIDEDPVTGSAHTALGPYWAERLGKQEFTAFQASARGGVVR
EECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCEEE
VRLEGDRVKLGGQAVTVMTGELLT
EEECCCEEEECCEEEEEEECCCCC
>Mature Secondary Structure 
AIRIVQVDAFTDRAFAGNPAAVCVLREAPDEQWMRDVAREMNLSETAFLVPKDDGYQLR
EEEEEEEECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEE
WLTPAVEVDLCGHATVASAHVLWQDGHLPADRQARFYTRSGKLTADRRGDWIELDFPAKV
EECCEEEEEECCCCEEEEEEEEEECCCCCCCCCEEEEEECCCEEECCCCCEEEEECCCEE
AVAAEPPPELLPALGLSEAKFVGKNAFDYLVEVDSEATLRGLSPDHSMLRKLPVRGIIVT
EEECCCCHHHHHHCCCCCHHHHCCCCEEEEEEECCCCEEECCCCCHHHHHHCCCCEEEEE
ARASTPGYDFMSRFFAPGSGIDEDPVTGSAHTALGPYWAERLGKQEFTAFQASARGGVVR
EECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCEEE
VRLEGDRVKLGGQAVTVMTGELLT
EEECCCEEEECCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]