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The map label for this gene is 116620847

Identifier: 116620847

GI number: 116620847

Start: 2144636

End: 2145229

Strand: Reverse

Name: 116620847

Synonym: Acid_1728

Alternate gene names: NA

Gene position: 2145229-2144636 (Counterclockwise)

Preceding gene: 116620848

Following gene: 116620846

Centisome position: 21.53

GC content: 63.8

Gene sequence:

>594_bases
ATGTCTGAAGGATCACTCAGCCCAAGGGAGCAGGCGGATTTAGCGGAACGCATCCGGGCAGGCGAACCTCTGGCCGAAGA
AGAGCTTGTGAGGCGATATCACGCTCGAATTCTGGCGGCCTTGATCGGGCAGACGCGCGACCGGGAAGCGTCGCGAGACC
TGGCGCAGGACGTACTGATCATTGCTTTGGGAGCGGTGCGATCCGGCAGGGTGAATGAGCCGGAAAAACTCGGACTCTAC
ATTCTGGGGATCGCGCGAATCCTGGCAAAGAACCACATTCGGAAGCGGATCGACCAGCAGTCGCGGGAGGAAGAGCTGCC
CGCGGAAGTGAGGGACCGGATTGCGGGTCCTCTGGGCCAAGCGCGGATGGAAGAGGCGGAGCGGGAACGGTCTGTGCGCG
AGGCGCTCGACGAACTACCGGGAGCGGACCGGGAGATCGTGCTGCTGACGTTGGATGGGCGGAAGCCGCGGGAGATCGCG
GCGACGCTGGGGATGGCGCCGGACGTGGTGCGGCAGCGCAAGTCGCGCGCCATACAGAAGATCGCGCTTTCCCTGGGGAC
GGTGTCACAAACCGGAGGTCCGGGACACTTATGA

Upstream 100 bases:

>100_bases
GCGGCGTTCCCTTCCCTCAGCAATAGAGTGCCGGCTGCGTAGTTTTTGTGACAGATCCGGTGCGAGATTTGTTGGAAGTA
TATAATTGCGTTAACGGGAC

Downstream 100 bases:

>100_bases
GTGGGGCCAAGCCTGGAGTGAACTGCGAGACGGTACAGAGCGGAAGGATGGTCGAGCGGTATGTGCTTGGCCAGCTGGGA
GCGGCGGAACAAGACTCGTT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MSEGSLSPREQADLAERIRAGEPLAEEELVRRYHARILAALIGQTRDREASRDLAQDVLIIALGAVRSGRVNEPEKLGLY
ILGIARILAKNHIRKRIDQQSREEELPAEVRDRIAGPLGQARMEEAERERSVREALDELPGADREIVLLTLDGRKPREIA
ATLGMAPDVVRQRKSRAIQKIALSLGTVSQTGGPGHL

Sequences:

>Translated_197_residues
MSEGSLSPREQADLAERIRAGEPLAEEELVRRYHARILAALIGQTRDREASRDLAQDVLIIALGAVRSGRVNEPEKLGLY
ILGIARILAKNHIRKRIDQQSREEELPAEVRDRIAGPLGQARMEEAERERSVREALDELPGADREIVLLTLDGRKPREIA
ATLGMAPDVVRQRKSRAIQKIALSLGTVSQTGGPGHL
>Mature_196_residues
SEGSLSPREQADLAERIRAGEPLAEEELVRRYHARILAALIGQTRDREASRDLAQDVLIIALGAVRSGRVNEPEKLGLYI
LGIARILAKNHIRKRIDQQSREEELPAEVRDRIAGPLGQARMEEAERERSVREALDELPGADREIVLLTLDGRKPREIAA
TLGMAPDVVRQRKSRAIQKIALSLGTVSQTGGPGHL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21782; Mature: 21651

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEGSLSPREQADLAERIRAGEPLAEEELVRRYHARILAALIGQTRDREASRDLAQDVLI
CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IALGAVRSGRVNEPEKLGLYILGIARILAKNHIRKRIDQQSREEELPAEVRDRIAGPLGQ
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHH
ARMEEAERERSVREALDELPGADREIVLLTLDGRKPREIAATLGMAPDVVRQRKSRAIQK
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHH
IALSLGTVSQTGGPGHL
HHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SEGSLSPREQADLAERIRAGEPLAEEELVRRYHARILAALIGQTRDREASRDLAQDVLI
CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IALGAVRSGRVNEPEKLGLYILGIARILAKNHIRKRIDQQSREEELPAEVRDRIAGPLGQ
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHH
ARMEEAERERSVREALDELPGADREIVLLTLDGRKPREIAATLGMAPDVVRQRKSRAIQK
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHH
IALSLGTVSQTGGPGHL
HHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA