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The map label for this gene is yggB [C]

Identifier: 116620721

GI number: 116620721

Start: 1968035

End: 1969084

Strand: Direct

Name: yggB [C]

Synonym: Acid_1601

Alternate gene names: 116620721

Gene position: 1968035-1969084 (Clockwise)

Preceding gene: 116620719

Following gene: 116620722

Centisome position: 19.75

GC content: 60.57

Gene sequence:

>1050_bases
ATGGAGATAATCACGCCGCTGGCGATCTTCCTGGCGACCTTTTTGGCGGGTTGGCTGGTGCGGCGCCTGGTGCTTCGCGC
CCTACAATCTTATAACAGCCGCACCGGCAGCCGGGCGGGCCAGGTGCTCTACCAGGCGCTTCACGGTCCGGCGATGATCT
GGGCATTAATCCTGGCCGCCCATGTAGCCTTCCAGTCGTCCGATTTGCCCACGCGATTTACCAATCTTGGCTCCAACGCA
TTGCTGGCGCTATGGATTATCTCGCTGACGCTAATGTCAATGCGAACGGTGGGAGACCTGGTGCGTCACTATGCCTCCCA
GGTGCCGGGCGCAATGCCGGTGACGACGCTGACGCAGAACCTGGCGCAGATCGGGGTGGTGATCCTCGGCGCCCTCATTC
TGCTGAACCAGTTCAATATCTCGATCACTCCGATCCTGACGGCTTTGGGGGTAGGTGGTTTGGCGGTTGCACTGGCATTG
CAGGACACGCTATCGAACCTGTTTGGGGGGTTTTACGTGGCGGTGGCCGGGCAGGTGCGGGTGGGGGACTACATCAAGCT
CAATACAAGTGAAGAGGGCAACGTTACCGATATAGGCTGGCGCTGCACGACCATCCGCGCCCAGTCCAACAATATGATTA
TTGTGCCGAATTCCAAACTGTCGCAGGCGATTGTGACCAACTATTACCTGCCCGAAAAGCGGATGGCCGGGGGGTTTCCG
GTGACGGTCGGGTATGAGAGCGATCCGGACCAGGTAGAACGGGTGCTAATGGAGGTGCTCGTGCAATCGGCGAGGGAGGT
CCCGGGGATGCTGGCCGAGCCGGCGCCGAGCGTTGCGTTCGACCCGGGCTTTGGGGACCAGGGGATGGGCTTCACGGCGA
ACTTTCAGGTAGCCGAATTCGCAAGCCTGGGGCCGGTGCGTAACGAGTTGAGAAGACGGGTGTTACGCCGTTTCCGGGAG
GAGGGTATCGGGATTCCGTACCCCACGCGGACCGTGTTCCTGCGCGGTGATAATCTGACGAAACCACCGGAGGGGGCTGC
GCATCAGTAG

Upstream 100 bases:

>100_bases
ACGCGCCGCCACATCTATGCGTGCAAACGATTTAATATGCGAATCTGGTGCTATGAAGAGCGGATTCGCAGGTTTCCGGC
GGGTATTCGTGGAGAATCCC

Downstream 100 bases:

>100_bases
GAAGGTGGATGGGGTTGGCACCCAATAAAAGAATCTTAATGGGGCCGATCGGAATTTTTTCTCCGATTCCTTGCCATGCG
CGGCTTCGTTTGTTAATCTA

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MEIITPLAIFLATFLAGWLVRRLVLRALQSYNSRTGSRAGQVLYQALHGPAMIWALILAAHVAFQSSDLPTRFTNLGSNA
LLALWIISLTLMSMRTVGDLVRHYASQVPGAMPVTTLTQNLAQIGVVILGALILLNQFNISITPILTALGVGGLAVALAL
QDTLSNLFGGFYVAVAGQVRVGDYIKLNTSEEGNVTDIGWRCTTIRAQSNNMIIVPNSKLSQAIVTNYYLPEKRMAGGFP
VTVGYESDPDQVERVLMEVLVQSAREVPGMLAEPAPSVAFDPGFGDQGMGFTANFQVAEFASLGPVRNELRRRVLRRFRE
EGIGIPYPTRTVFLRGDNLTKPPEGAAHQ

Sequences:

>Translated_349_residues
MEIITPLAIFLATFLAGWLVRRLVLRALQSYNSRTGSRAGQVLYQALHGPAMIWALILAAHVAFQSSDLPTRFTNLGSNA
LLALWIISLTLMSMRTVGDLVRHYASQVPGAMPVTTLTQNLAQIGVVILGALILLNQFNISITPILTALGVGGLAVALAL
QDTLSNLFGGFYVAVAGQVRVGDYIKLNTSEEGNVTDIGWRCTTIRAQSNNMIIVPNSKLSQAIVTNYYLPEKRMAGGFP
VTVGYESDPDQVERVLMEVLVQSAREVPGMLAEPAPSVAFDPGFGDQGMGFTANFQVAEFASLGPVRNELRRRVLRRFRE
EGIGIPYPTRTVFLRGDNLTKPPEGAAHQ
>Mature_349_residues
MEIITPLAIFLATFLAGWLVRRLVLRALQSYNSRTGSRAGQVLYQALHGPAMIWALILAAHVAFQSSDLPTRFTNLGSNA
LLALWIISLTLMSMRTVGDLVRHYASQVPGAMPVTTLTQNLAQIGVVILGALILLNQFNISITPILTALGVGGLAVALAL
QDTLSNLFGGFYVAVAGQVRVGDYIKLNTSEEGNVTDIGWRCTTIRAQSNNMIIVPNSKLSQAIVTNYYLPEKRMAGGFP
VTVGYESDPDQVERVLMEVLVQSAREVPGMLAEPAPSVAFDPGFGDQGMGFTANFQVAEFASLGPVRNELRRRVLRRFRE
EGIGIPYPTRTVFLRGDNLTKPPEGAAHQ

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=278, Percent_Identity=26.6187050359712, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787591, Length=330, Percent_Identity=23.030303030303, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1786670, Length=222, Percent_Identity=26.5765765765766, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI2367355, Length=216, Percent_Identity=25, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 37868; Mature: 37868

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIITPLAIFLATFLAGWLVRRLVLRALQSYNSRTGSRAGQVLYQALHGPAMIWALILAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HVAFQSSDLPTRFTNLGSNALLALWIISLTLMSMRTVGDLVRHYASQVPGAMPVTTLTQN
HHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LAQIGVVILGALILLNQFNISITPILTALGVGGLAVALALQDTLSNLFGGFYVAVAGQVR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCEEEEEECCEE
VGDYIKLNTSEEGNVTDIGWRCTTIRAQSNNMIIVPNSKLSQAIVTNYYLPEKRMAGGFP
ECCEEEECCCCCCCEEEECEEEEEEEECCCCEEEEECCHHHHHHHHHCCCCHHHHCCCCC
VTVGYESDPDQVERVLMEVLVQSAREVPGMLAEPAPSVAFDPGFGDQGMGFTANFQVAEF
EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCEEECCHHHHH
ASLGPVRNELRRRVLRRFREEGIGIPYPTRTVFLRGDNLTKPPEGAAHQ
HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MEIITPLAIFLATFLAGWLVRRLVLRALQSYNSRTGSRAGQVLYQALHGPAMIWALILAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HVAFQSSDLPTRFTNLGSNALLALWIISLTLMSMRTVGDLVRHYASQVPGAMPVTTLTQN
HHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LAQIGVVILGALILLNQFNISITPILTALGVGGLAVALALQDTLSNLFGGFYVAVAGQVR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCEEEEEECCEE
VGDYIKLNTSEEGNVTDIGWRCTTIRAQSNNMIIVPNSKLSQAIVTNYYLPEKRMAGGFP
ECCEEEECCCCCCCEEEECEEEEEEEECCCCEEEEECCHHHHHHHHHCCCCHHHHCCCCC
VTVGYESDPDQVERVLMEVLVQSAREVPGMLAEPAPSVAFDPGFGDQGMGFTANFQVAEF
EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCEEECCHHHHH
ASLGPVRNELRRRVLRRFREEGIGIPYPTRTVFLRGDNLTKPPEGAAHQ
HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]