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The map label for this gene is hofQ [C]

Identifier: 116620532

GI number: 116620532

Start: 1736846

End: 1738435

Strand: Direct

Name: hofQ [C]

Synonym: Acid_1410

Alternate gene names: 116620532

Gene position: 1736846-1738435 (Clockwise)

Preceding gene: 116620531

Following gene: 116620533

Centisome position: 17.43

GC content: 61.82

Gene sequence:

>1590_bases
GTGTCCCGGCTTCGCATAGCAGCCATACTCTTCGCGGCCCTTTTGCTCTGGACCCCTGCCGCACGGTCGGTAGCAGAGCA
GACGACGGCCGCCTCGCAGGACCCGGCTCCCGCAGCCGCGCGCCCGGAAGCCGAGCCTCCCGCCGGGGCTTCCCAGGATG
TTCAGCCCGCCCCCGGTCCCGGCAAACTGATGGTCACCGTGGGCAAGAGCCTGATCATCGATAGCCCGATGAACATTCAG
CGCATCTCGGTGGCGAACGGTGAACTAATTGAAGCCGTGGCCGTAAACCCCAAGGAAGTTCTTATCAACGGTAAGGCAGC
GGGTGAGACCACCTTGATCATCTGGCAGCAGGGCGGCAACCGTCTGCTTTACGATCTCACGGTCCGCATCAGCCCCGTTC
GCCTCGACGTCGTCCGGCAGCAGCTGGCCAGAGATTTTCCGGATGACGAGATCAACGTCACGTACGATAACGAAGTCGCT
TTCGTTCGTGGCCGTGTGAAGGATCTCAGTGCGGCGGATCGCGTCATGGCGATCGCCGCCAGTCTCGGCAAGACCGTCAA
CCTGCTGCGCGTCGATGTGCCGCCGGTCGAGACCCAGATTCTGCTCCATGTCCGCTTCGCCAATGTCGATCGCGGCGCGA
GCACCGATCTCGGCGTGAGCCTTGCAACGGGCGCCTTCAATCAGTCCACTGCAATCACTACCGGCCAATACCCTCCTCCA
ACGGTCGGCACGGATGGCCGAGTCAGCATTTCTGACGCCCTCAACATTCTCCTGTTCCGCAAGGACATCAACCTCGGCGC
CACAATCAAGGCTCTCGAAAGCAAGCGCATGTTGGAAACCCTTGCCGAGCCGAATGTGATGGCGATCAACGGCAAGCCCG
CCGCGTTCATCGCGGGCGGAGAATTTCCGGTGCCGATGGTGCAGGGCGGCGGCCTCGCCGGCGCCGTCAGCATCACCTTC
CGCGAGTTTGGCATTCGGATCAACTTCCTCCCCAAGATCACTCCGCGCGGCACCATCCAGCTTGCGGTTGCTCCTGAAGT
CAGCTCGCTCGACTACTCCAACGCGGTGACCTTCCAGGGGTACACGATTCCCGCCCTGGCCACCCGGCGCATTCAGACCG
AGGTCGAGTTGGAAACCGGCCAAAGCTTCGTCATCGCCGGGCTGCTGGACAATCGCACTACCGAAACCTTGAACAAGATT
CCGGGCCTCTCCAATATCCCGCTGCTCGGAAAACTGTTTCAAAGCCGTGCCGTCGCCAAGAACAATACGGAATTGATGGT
GATCGTGACGCCCGAAATCGTGCGCCCGATTCAGGCTGGCCAGCCTCTGCCCTCGTTGAACATGACAGTTCCTTTCATGT
CCAAGAACAGCGAGATCGATATGCACCATCCCGGGATGGACAAGACCGGTCCCGTCCCCGTGAAGCCGCCGCAGGAGACC
ATGCCGGTCGAGTTATTGCAGCAGCAGCGCAAGGAAGGCCAGGCAGCTCCTCCGGCCACGCAGACGTTCCAATTAGTGCA
GCCGGCGGCGACGCCCCCGGTGAACCCTGGGCTTACTCCTGCTGCGGGCTCCGGAGGATCGGGCAAATAG

Upstream 100 bases:

>100_bases
GGCGCCGCCACCACCTAAGGAAACACCTTTCACCATGGAGATCATCTCCGGCAGCGCCAAGACCGAAAAGAAATTCACTA
ACCCTCAGGAGGCCAAGTAA

Downstream 100 bases:

>100_bases
CCTGGAGACCCCTTCATGTATCCGTTGACCATTGGGCTGGCGATCGAAAATCGGGAACTCTGGGACCAGGCGCAGGCTAC
GCTCGGAGATCTCCCGTTCC

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 528

Protein sequence:

>529_residues
MSRLRIAAILFAALLLWTPAARSVAEQTTAASQDPAPAAARPEAEPPAGASQDVQPAPGPGKLMVTVGKSLIIDSPMNIQ
RISVANGELIEAVAVNPKEVLINGKAAGETTLIIWQQGGNRLLYDLTVRISPVRLDVVRQQLARDFPDDEINVTYDNEVA
FVRGRVKDLSAADRVMAIAASLGKTVNLLRVDVPPVETQILLHVRFANVDRGASTDLGVSLATGAFNQSTAITTGQYPPP
TVGTDGRVSISDALNILLFRKDINLGATIKALESKRMLETLAEPNVMAINGKPAAFIAGGEFPVPMVQGGGLAGAVSITF
REFGIRINFLPKITPRGTIQLAVAPEVSSLDYSNAVTFQGYTIPALATRRIQTEVELETGQSFVIAGLLDNRTTETLNKI
PGLSNIPLLGKLFQSRAVAKNNTELMVIVTPEIVRPIQAGQPLPSLNMTVPFMSKNSEIDMHHPGMDKTGPVPVKPPQET
MPVELLQQQRKEGQAAPPATQTFQLVQPAATPPVNPGLTPAAGSGGSGK

Sequences:

>Translated_529_residues
MSRLRIAAILFAALLLWTPAARSVAEQTTAASQDPAPAAARPEAEPPAGASQDVQPAPGPGKLMVTVGKSLIIDSPMNIQ
RISVANGELIEAVAVNPKEVLINGKAAGETTLIIWQQGGNRLLYDLTVRISPVRLDVVRQQLARDFPDDEINVTYDNEVA
FVRGRVKDLSAADRVMAIAASLGKTVNLLRVDVPPVETQILLHVRFANVDRGASTDLGVSLATGAFNQSTAITTGQYPPP
TVGTDGRVSISDALNILLFRKDINLGATIKALESKRMLETLAEPNVMAINGKPAAFIAGGEFPVPMVQGGGLAGAVSITF
REFGIRINFLPKITPRGTIQLAVAPEVSSLDYSNAVTFQGYTIPALATRRIQTEVELETGQSFVIAGLLDNRTTETLNKI
PGLSNIPLLGKLFQSRAVAKNNTELMVIVTPEIVRPIQAGQPLPSLNMTVPFMSKNSEIDMHHPGMDKTGPVPVKPPQET
MPVELLQQQRKEGQAAPPATQTFQLVQPAATPPVNPGLTPAAGSGGSGK
>Mature_528_residues
SRLRIAAILFAALLLWTPAARSVAEQTTAASQDPAPAAARPEAEPPAGASQDVQPAPGPGKLMVTVGKSLIIDSPMNIQR
ISVANGELIEAVAVNPKEVLINGKAAGETTLIIWQQGGNRLLYDLTVRISPVRLDVVRQQLARDFPDDEINVTYDNEVAF
VRGRVKDLSAADRVMAIAASLGKTVNLLRVDVPPVETQILLHVRFANVDRGASTDLGVSLATGAFNQSTAITTGQYPPPT
VGTDGRVSISDALNILLFRKDINLGATIKALESKRMLETLAEPNVMAINGKPAAFIAGGEFPVPMVQGGGLAGAVSITFR
EFGIRINFLPKITPRGTIQLAVAPEVSSLDYSNAVTFQGYTIPALATRRIQTEVELETGQSFVIAGLLDNRTTETLNKIP
GLSNIPLLGKLFQSRAVAKNNTELMVIVTPEIVRPIQAGQPLPSLNMTVPFMSKNSEIDMHHPGMDKTGPVPVKPPQETM
PVELLQQQRKEGQAAPPATQTFQLVQPAATPPVNPGLTPAAGSGGSGK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=249, Percent_Identity=24.4979919678715, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87082242, Length=215, Percent_Identity=27.906976744186, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 56119; Mature: 55988

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLRIAAILFAALLLWTPAARSVAEQTTAASQDPAPAAARPEAEPPAGASQDVQPAPGP
CCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GKLMVTVGKSLIIDSPMNIQRISVANGELIEAVAVNPKEVLINGKAAGETTLIIWQQGGN
CEEEEEECCEEEECCCCCEEEEEECCCCEEEEEECCCHHEEEECCCCCCEEEEEEECCCC
RLLYDLTVRISPVRLDVVRQQLARDFPDDEINVTYDNEVAFVRGRVKDLSAADRVMAIAA
EEEEEEEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHH
SLGKTVNLLRVDVPPVETQILLHVRFANVDRGASTDLGVSLATGAFNQSTAITTGQYPPP
HHCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEECCCCCC
TVGTDGRVSISDALNILLFRKDINLGATIKALESKRMLETLAEPNVMAINGKPAAFIAGG
CCCCCCCEEHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEECC
EFPVPMVQGGGLAGAVSITFREFGIRINFLPKITPRGTIQLAVAPEVSSLDYSNAVTFQG
CCCCCEEECCCCEEEEEEEEEECCEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEECC
YTIPALATRRIQTEVELETGQSFVIAGLLDNRTTETLNKIPGLSNIPLLGKLFQSRAVAK
EEEHHHHHEEEEEEEEEECCCEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCC
NNTELMVIVTPEIVRPIQAGQPLPSLNMTVPFMSKNSEIDMHHPGMDKTGPVPVKPPQET
CCCEEEEEECHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCC
MPVELLQQQRKEGQAAPPATQTFQLVQPAATPPVNPGLTPAAGSGGSGK
CCHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SRLRIAAILFAALLLWTPAARSVAEQTTAASQDPAPAAARPEAEPPAGASQDVQPAPGP
CCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GKLMVTVGKSLIIDSPMNIQRISVANGELIEAVAVNPKEVLINGKAAGETTLIIWQQGGN
CEEEEEECCEEEECCCCCEEEEEECCCCEEEEEECCCHHEEEECCCCCCEEEEEEECCCC
RLLYDLTVRISPVRLDVVRQQLARDFPDDEINVTYDNEVAFVRGRVKDLSAADRVMAIAA
EEEEEEEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCHHHHHHHHHHHHHH
SLGKTVNLLRVDVPPVETQILLHVRFANVDRGASTDLGVSLATGAFNQSTAITTGQYPPP
HHCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEECCCCCC
TVGTDGRVSISDALNILLFRKDINLGATIKALESKRMLETLAEPNVMAINGKPAAFIAGG
CCCCCCCEEHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEECC
EFPVPMVQGGGLAGAVSITFREFGIRINFLPKITPRGTIQLAVAPEVSSLDYSNAVTFQG
CCCCCEEECCCCEEEEEEEEEECCEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEECC
YTIPALATRRIQTEVELETGQSFVIAGLLDNRTTETLNKIPGLSNIPLLGKLFQSRAVAK
EEEHHHHHEEEEEEEEEECCCEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCC
NNTELMVIVTPEIVRPIQAGQPLPSLNMTVPFMSKNSEIDMHHPGMDKTGPVPVKPPQET
CCCEEEEEECHHHHHHHHCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCC
MPVELLQQQRKEGQAAPPATQTFQLVQPAATPPVNPGLTPAAGSGGSGK
CCHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]