Click here to switch to the map view.

The map label for this gene is yfiK [H]

Identifier: 116620528

GI number: 116620528

Start: 1732203

End: 1732958

Strand: Reverse

Name: yfiK [H]

Synonym: Acid_1406

Alternate gene names: 116620528

Gene position: 1732958-1732203 (Counterclockwise)

Preceding gene: 116620537

Following gene: 116620527

Centisome position: 17.39

GC content: 59.92

Gene sequence:

>756_bases
ATGACGCGAATTCTTCTTTACAGTGACGAACCTATTCTGGCAAAGGGTCTGGAATCCGTGCTCCGCCAGGTTGAAGGTTT
CGACCTGCTGCCCACGTGCAATACCCTCGCCGCCCTCATGGAGCAGATCACGCAAGGAACTCCGGACCTGGTCTTGATGG
ATCTCACTCCGGAAGTGACGTTCGCAGTGCTCAGCGAAATGAAACACGCCATGAACAACTCCCGGATCGTACTCTGGGTG
AACTCGATTTCCACCGAGTTGGCGTTTCAGGCCATGGGACTTGGCGTCCGCGGAATCCTGCGCAAAACGCTCCCCACGGA
ACTACAGGTCAAGTGTTTGCAGAAGGTCCAAGCCGGCGAACTCTGGTTCGAAAAGGCTCTGACCGACAGCTTCCTCTGCG
CCCGCCGGGTTGCCCTGACGCAGCGTGAAGGCCAGCTGGTGAGCCTTCTTTCCCAGGGGTTGAAGAACAAAGAGATCGCC
ACGACCTTGATGATTTCCGAAGGGACGGTCAAGGTATACCTCTCGCGGCTGTTCCAGAAGGTCGGCGTGAAGGACCGCTT
CGAGCTCGCCTTGTTCGGCCTCAAGAACCTGACCACCGGCCAGCTTCCGGTCGGCGAGAAGGGTCAGAGGACCGGCGCCA
GCGCCATGCCGGGCCTGCGCTCCCTGGTTCTGGAGCGCCCGTCCGAGCAGCAGCGGGTGCAACAGGAGCCGACCCGCTTC
GGTACTCCGCTCCGTCCGGTAGTGAGCCGCTATTAA

Upstream 100 bases:

>100_bases
ACAATCTTCAAAGAAAAGCGGAATCGAAATAAGCGCAAAGCCTGAATTAAATAGGCAAAGCGCCGGAAGTCAGCGGATCT
GCTTTTGGAAGGTGGAGAAA

Downstream 100 bases:

>100_bases
CCAAAATCAGCGAGAAAAGTTAATGAAAGGGCGGCCTCCGGGCCGCCCTTTTTCTTGTGGCCCCTTCGAGGCGCTCTTCC
CAAGCCCGACCTGCCGCCCT

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MTRILLYSDEPILAKGLESVLRQVEGFDLLPTCNTLAALMEQITQGTPDLVLMDLTPEVTFAVLSEMKHAMNNSRIVLWV
NSISTELAFQAMGLGVRGILRKTLPTELQVKCLQKVQAGELWFEKALTDSFLCARRVALTQREGQLVSLLSQGLKNKEIA
TTLMISEGTVKVYLSRLFQKVGVKDRFELALFGLKNLTTGQLPVGEKGQRTGASAMPGLRSLVLERPSEQQRVQQEPTRF
GTPLRPVVSRY

Sequences:

>Translated_251_residues
MTRILLYSDEPILAKGLESVLRQVEGFDLLPTCNTLAALMEQITQGTPDLVLMDLTPEVTFAVLSEMKHAMNNSRIVLWV
NSISTELAFQAMGLGVRGILRKTLPTELQVKCLQKVQAGELWFEKALTDSFLCARRVALTQREGQLVSLLSQGLKNKEIA
TTLMISEGTVKVYLSRLFQKVGVKDRFELALFGLKNLTTGQLPVGEKGQRTGASAMPGLRSLVLERPSEQQRVQQEPTRF
GTPLRPVVSRY
>Mature_250_residues
TRILLYSDEPILAKGLESVLRQVEGFDLLPTCNTLAALMEQITQGTPDLVLMDLTPEVTFAVLSEMKHAMNNSRIVLWVN
SISTELAFQAMGLGVRGILRKTLPTELQVKCLQKVQAGELWFEKALTDSFLCARRVALTQREGQLVSLLSQGLKNKEIAT
TLMISEGTVKVYLSRLFQKVGVKDRFELALFGLKNLTTGQLPVGEKGQRTGASAMPGLRSLVLERPSEQQRVQQEPTRFG
TPLRPVVSRY

Specific function: Member of the two-component regulatory system yfiJ/yfiK [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=195, Percent_Identity=24.1025641025641, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27903; Mature: 27772

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRILLYSDEPILAKGLESVLRQVEGFDLLPTCNTLAALMEQITQGTPDLVLMDLTPEVT
CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHH
FAVLSEMKHAMNNSRIVLWVNSISTELAFQAMGLGVRGILRKTLPTELQVKCLQKVQAGE
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHH
LWFEKALTDSFLCARRVALTQREGQLVSLLSQGLKNKEIATTLMISEGTVKVYLSRLFQK
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHEEEEECCCHHHHHHHHHHHH
VGVKDRFELALFGLKNLTTGQLPVGEKGQRTGASAMPGLRSLVLERPSEQQRVQQEPTRF
CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCHHHC
GTPLRPVVSRY
CCCCHHHHHCC
>Mature Secondary Structure 
TRILLYSDEPILAKGLESVLRQVEGFDLLPTCNTLAALMEQITQGTPDLVLMDLTPEVT
CEEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHH
FAVLSEMKHAMNNSRIVLWVNSISTELAFQAMGLGVRGILRKTLPTELQVKCLQKVQAGE
HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHH
LWFEKALTDSFLCARRVALTQREGQLVSLLSQGLKNKEIATTLMISEGTVKVYLSRLFQK
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHEEEEECCCHHHHHHHHHHHH
VGVKDRFELALFGLKNLTTGQLPVGEKGQRTGASAMPGLRSLVLERPSEQQRVQQEPTRF
CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCHHHC
GTPLRPVVSRY
CCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]