Click here to switch to the map view.

The map label for this gene is ychK [C]

Identifier: 116620517

GI number: 116620517

Start: 1722395

End: 1723114

Strand: Direct

Name: ychK [C]

Synonym: Acid_1395

Alternate gene names: 116620517

Gene position: 1722395-1723114 (Clockwise)

Preceding gene: 116620514

Following gene: 116620518

Centisome position: 17.28

GC content: 64.31

Gene sequence:

>720_bases
ATGATAAACGCACTGGTGCTCTCGGCCGGCGGCCTGTGGGGCGCGTGGGAAGTTGGGGCATGGAAGGTGCTGCGCGAGCG
CTTCCACTTCGACATGATCATCGGGACTTCGGCGGGCGCGATGAACGGATGGGCGATCGCGTCGGGCTGTACGCCCGAGG
AGTTGGAGCGCGAGTGGCTGGATTCGAAGATGGCCGGCGTGATGCGCGTCGGACTCCACGCCGCCGGATTTCTCCGCGGC
GAACCGCTGCACGAGAGGGCGCGCGAACTGTTCGTGCGATTTAAACCTCGGATGCCGTTTGCGCTGACCATCGTGGAAGT
GCCTTCGCTGCGCTCGCGGATTGTGCGCGAGAACGAGATTACCCCCTTGCACCTGGCGGCATCCTGCGCGATTCCACTGG
GCTTTCCGCCGGTGAAGATCGACGGCCGGTATTATGTGGACGGGGGATTTCGCGCGGGGCTGCCGTTGTGGGCGGCGGAA
GAACTCGGCGCCACGCAGGCGATTGCGTTGAACGTGCTCAACACCGTGGAATTTCGCATGTTGGGCAAGCTGCTATGGAA
GAAGAGCGCCCGCGGTACGATGAAGGTCATGTTGCTGGAACCCTCGGAGCGCCTGGGCGCGCTGCGCGATGCGGTGGTCT
GGGACGCGGAGCATGTCCGGCGCTGGATCGCGCTGGGGGAGCGGGACGCAACTCGCTTCGCGAGTTCGATTACAATGTAG

Upstream 100 bases:

>100_bases
CCAGCGGCATCAGGCGATCTCCATTACCGGCTGATTCCAGGATCGCGGCCACTTCCTCACCGTATGCTCTGGGATCGAAC
ATGTGGTACTCCTCTGATTG

Downstream 100 bases:

>100_bases
AGCTATGCCGCTTTATCGAGTCTTCCGCATGAAGGATTCGCCACGGCAGCAGTTCCGCTGGGCGCCCCACGTCTCCGGTC
CCGCTAACGCGAAGCCCAAG

Product: patatin

Products: NA

Alternate protein names: Transmembrane Protein; Phospholipase; Esterase; Alpha-Beta Hydrolase Family Esterase

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MINALVLSAGGLWGAWEVGAWKVLRERFHFDMIIGTSAGAMNGWAIASGCTPEELEREWLDSKMAGVMRVGLHAAGFLRG
EPLHERARELFVRFKPRMPFALTIVEVPSLRSRIVRENEITPLHLAASCAIPLGFPPVKIDGRYYVDGGFRAGLPLWAAE
ELGATQAIALNVLNTVEFRMLGKLLWKKSARGTMKVMLLEPSERLGALRDAVVWDAEHVRRWIALGERDATRFASSITM

Sequences:

>Translated_239_residues
MINALVLSAGGLWGAWEVGAWKVLRERFHFDMIIGTSAGAMNGWAIASGCTPEELEREWLDSKMAGVMRVGLHAAGFLRG
EPLHERARELFVRFKPRMPFALTIVEVPSLRSRIVRENEITPLHLAASCAIPLGFPPVKIDGRYYVDGGFRAGLPLWAAE
ELGATQAIALNVLNTVEFRMLGKLLWKKSARGTMKVMLLEPSERLGALRDAVVWDAEHVRRWIALGERDATRFASSITM
>Mature_239_residues
MINALVLSAGGLWGAWEVGAWKVLRERFHFDMIIGTSAGAMNGWAIASGCTPEELEREWLDSKMAGVMRVGLHAAGFLRG
EPLHERARELFVRFKPRMPFALTIVEVPSLRSRIVRENEITPLHLAASCAIPLGFPPVKIDGRYYVDGGFRAGLPLWAAE
ELGATQAIALNVLNTVEFRMLGKLLWKKSARGTMKVMLLEPSERLGALRDAVVWDAEHVRRWIALGERDATRFASSITM

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26579; Mature: 26579

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINALVLSAGGLWGAWEVGAWKVLRERFHFDMIIGTSAGAMNGWAIASGCTPEELEREWL
CCCEEEEECCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCCCCEEEECCCCHHHHHHHHH
DSKMAGVMRVGLHAAGFLRGEPLHERARELFVRFKPRMPFALTIVEVPSLRSRIVRENEI
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHCCCC
TPLHLAASCAIPLGFPPVKIDGRYYVDGGFRAGLPLWAAEELGATQAIALNVLNTVEFRM
CEEEEEEEEECCCCCCCEEECCEEEECCCCCCCCCCEEHHHHCCHHHHHHHHHHHHHHHH
LGKLLWKKSARGTMKVMLLEPSERLGALRDAVVWDAEHVRRWIALGERDATRFASSITM
HHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure
MINALVLSAGGLWGAWEVGAWKVLRERFHFDMIIGTSAGAMNGWAIASGCTPEELEREWL
CCCEEEEECCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCCCCEEEECCCCHHHHHHHHH
DSKMAGVMRVGLHAAGFLRGEPLHERARELFVRFKPRMPFALTIVEVPSLRSRIVRENEI
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHCCCC
TPLHLAASCAIPLGFPPVKIDGRYYVDGGFRAGLPLWAAEELGATQAIALNVLNTVEFRM
CEEEEEEEEECCCCCCCEEECCEEEECCCCCCCCCCEEHHHHCCHHHHHHHHHHHHHHHH
LGKLLWKKSARGTMKVMLLEPSERLGALRDAVVWDAEHVRRWIALGERDATRFASSITM
HHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA