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The map label for this gene is rbsR [H]

Identifier: 116620480

GI number: 116620480

Start: 1674234

End: 1675250

Strand: Reverse

Name: rbsR [H]

Synonym: Acid_1358

Alternate gene names: 116620480

Gene position: 1675250-1674234 (Counterclockwise)

Preceding gene: 116620481

Following gene: 116620479

Centisome position: 16.81

GC content: 63.42

Gene sequence:

>1017_bases
ATGTCCAACGCTTCTGCAACGCCGGTTCGTCTGAAAGACATCGCCCGGGACCTTAATGTCAGCGTGATGACAGTTTCAAA
AGTGGTTCGCGGCTGCGCCGACGTGGGCGCCGAAACGCGCGGTCGCGTACTCGCCCGCATCAAGGAACTCAACTACCAGC
CGAACTGGGTGGCGCGCAGTCTGGCTGCCCGCCGGACATTCATGATCGGGCTGATCGTTCCCGACCTGATGCATTCTTTC
TTCGCCGAGATCGCCAAGGGCGTGGCCGCCACCATCCGCCCGCTCGGCTACGACGTGGTCATCTGCAACTCCGAAGAGAA
CGGCGATCTCGAGTCCAGCGAAGTCGATCGCCTGCTTGGCCGTCAGGTCGATGGCCTGCTGCTCGCCTCGGCGCAGCCTC
CCTCATCCCTCGCCGTGTTCGAACGCATCGAGGCCCGCGGTACTCCTTACGTCTTGATCGACCGCCGTTTCGCCGACGTG
CACGCTCCCTACGTAGGCGCCGACGATGAAGCCATCGGCCGCATGGCCACTCAGCATCTGATCGATCGCGGCTGCCGGCG
CATCGCCCACATCGCGGGCCCGGCCGTGACCACCGGCCTCGGCCGGCAGAAGGGCTATGAGGAAGCTCTCGCCGCCTCCG
GCATCAACATCCCCGAAGGCTTCATAGTACAGGCCACCGACGACGATACCGGCTACCAGGCAACACGCCGTCTCCTCAAA
TTGACCCCGCGTCCCGACGCCATCTTCGGCTACAACGACCCCACCGCCGCTGGCGCCATGAAGGCGATCCTCGAGGCCGG
CATCCGTATCCCGGAGGAGATTAAGGTAATCGGCGTAGGCAACGTCCACTATTCGGACCTCCTGCGCGTACCGCTCTCCA
CCATCGACCAAAGCAGCGCCTCCATTGGCCAGCAGGCTGCCGACATTCTGTTGAAGGCAATCGGCAACAAACGCAAGCGC
CCCGCTAAAACCATCCTGATCGACCCCATCCTGATCGCCCGCGAATCGACCCGCTAG

Upstream 100 bases:

>100_bases
TCGCCTTCAGAAACTTCGACGCCAACGTCAATATCGCCGAGTTCCTCAAGCTCTACGGCATCTGACCTCCCGCATCCTGA
TATACTCGCGTTTTGAATTC

Downstream 100 bases:

>100_bases
AATCCGGAGCATCAGAGCCGCGACCGTCAGCCTCAGGGAGCGATCGCTTGATACGCCTTCACAGCCCTTTCGAGGGGTGG
CGTCCCCGCCGCGCCCACTC

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MSNASATPVRLKDIARDLNVSVMTVSKVVRGCADVGAETRGRVLARIKELNYQPNWVARSLAARRTFMIGLIVPDLMHSF
FAEIAKGVAATIRPLGYDVVICNSEENGDLESSEVDRLLGRQVDGLLLASAQPPSSLAVFERIEARGTPYVLIDRRFADV
HAPYVGADDEAIGRMATQHLIDRGCRRIAHIAGPAVTTGLGRQKGYEEALAASGINIPEGFIVQATDDDTGYQATRRLLK
LTPRPDAIFGYNDPTAAGAMKAILEAGIRIPEEIKVIGVGNVHYSDLLRVPLSTIDQSSASIGQQAADILLKAIGNKRKR
PAKTILIDPILIARESTR

Sequences:

>Translated_338_residues
MSNASATPVRLKDIARDLNVSVMTVSKVVRGCADVGAETRGRVLARIKELNYQPNWVARSLAARRTFMIGLIVPDLMHSF
FAEIAKGVAATIRPLGYDVVICNSEENGDLESSEVDRLLGRQVDGLLLASAQPPSSLAVFERIEARGTPYVLIDRRFADV
HAPYVGADDEAIGRMATQHLIDRGCRRIAHIAGPAVTTGLGRQKGYEEALAASGINIPEGFIVQATDDDTGYQATRRLLK
LTPRPDAIFGYNDPTAAGAMKAILEAGIRIPEEIKVIGVGNVHYSDLLRVPLSTIDQSSASIGQQAADILLKAIGNKRKR
PAKTILIDPILIARESTR
>Mature_337_residues
SNASATPVRLKDIARDLNVSVMTVSKVVRGCADVGAETRGRVLARIKELNYQPNWVARSLAARRTFMIGLIVPDLMHSFF
AEIAKGVAATIRPLGYDVVICNSEENGDLESSEVDRLLGRQVDGLLLASAQPPSSLAVFERIEARGTPYVLIDRRFADVH
APYVGADDEAIGRMATQHLIDRGCRRIAHIAGPAVTTGLGRQKGYEEALAASGINIPEGFIVQATDDDTGYQATRRLLKL
TPRPDAIFGYNDPTAAGAMKAILEAGIRIPEEIKVIGVGNVHYSDLLRVPLSTIDQSSASIGQQAADILLKAIGNKRKRP
AKTILIDPILIARESTR

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787948, Length=332, Percent_Identity=37.3493975903614, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1790194, Length=331, Percent_Identity=33.8368580060423, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1790369, Length=335, Percent_Identity=30.4477611940298, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789202, Length=328, Percent_Identity=30.7926829268293, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1788474, Length=333, Percent_Identity=30.6306306306306, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787580, Length=318, Percent_Identity=28.9308176100629, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1786268, Length=315, Percent_Identity=26.6666666666667, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI48994940, Length=317, Percent_Identity=26.813880126183, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1789068, Length=277, Percent_Identity=29.2418772563177, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1786540, Length=311, Percent_Identity=30.8681672025724, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790715, Length=314, Percent_Identity=25.4777070063694, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1787906, Length=341, Percent_Identity=26.099706744868, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790689, Length=328, Percent_Identity=27.1341463414634, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789456, Length=347, Percent_Identity=25.0720461095101, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36513; Mature: 36382

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNASATPVRLKDIARDLNVSVMTVSKVVRGCADVGAETRGRVLARIKELNYQPNWVARS
CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHH
LAARRTFMIGLIVPDLMHSFFAEIAKGVAATIRPLGYDVVICNSEENGDLESSEVDRLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHH
RQVDGLLLASAQPPSSLAVFERIEARGTPYVLIDRRFADVHAPYVGADDEAIGRMATQHL
CCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCHHHHHHHHHHHH
IDRGCRRIAHIAGPAVTTGLGRQKGYEEALAASGINIPEGFIVQATDDDTGYQATRRLLK
HHHHHHHHHHHCCCHHHHCCCHHCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH
LTPRPDAIFGYNDPTAAGAMKAILEAGIRIPEEIKVIGVGNVHYSDLLRVPLSTIDQSSA
CCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCHHHH
SIGQQAADILLKAIGNKRKRPAKTILIDPILIARESTR
HHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEECCCCC
>Mature Secondary Structure 
SNASATPVRLKDIARDLNVSVMTVSKVVRGCADVGAETRGRVLARIKELNYQPNWVARS
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHH
LAARRTFMIGLIVPDLMHSFFAEIAKGVAATIRPLGYDVVICNSEENGDLESSEVDRLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHH
RQVDGLLLASAQPPSSLAVFERIEARGTPYVLIDRRFADVHAPYVGADDEAIGRMATQHL
CCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCHHHHHHHHHHHH
IDRGCRRIAHIAGPAVTTGLGRQKGYEEALAASGINIPEGFIVQATDDDTGYQATRRLLK
HHHHHHHHHHHCCCHHHHCCCHHCCHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH
LTPRPDAIFGYNDPTAAGAMKAILEAGIRIPEEIKVIGVGNVHYSDLLRVPLSTIDQSSA
CCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHCHHHH
SIGQQAADILLKAIGNKRKRPAKTILIDPILIARESTR
HHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]