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The map label for this gene is ccmO [H]

Identifier: 116620453

GI number: 116620453

Start: 1644178

End: 1644750

Strand: Direct

Name: ccmO [H]

Synonym: Acid_1331

Alternate gene names: 116620453

Gene position: 1644178-1644750 (Clockwise)

Preceding gene: 116620452

Following gene: 116620454

Centisome position: 16.5

GC content: 64.4

Gene sequence:

>573_bases
ATGCCAAATCAACAAGCACTGGGAATGATCGAGACGAAGGGGCTGGTGGCCCTGATCGAAGGCACGGACAGCATGCTGAA
GGCGGCGAACGTGAGCTTCGCCGGATGGGTGTCAGTGGGGTCTGGGCTGGTGACCGCGTTTGTGCAGGGCGACGTGGGCG
CGGTCAAGGCGGCCACGGATGCGGGCGCAGCGTCGGCGCGGAAGGTGGGGGAACTGGCGAGCGTGCTGGTGATCTCGCGG
CCGCACGACGAACTGCCGAATTTTTCGGGCGCTCCGCACGCGCCTTCGAAGACGGCGCGCACGGGGCACCAGGCGATCGG
ACTGATTGAAACCAAGGGACTGGTGGGATTGATCGACGCCAGCGACGCGATGTGCAAGACGGCGTCGGTAGAGCTGATGA
AGATCATCGAGATCGGCGGCGGGTTTGTCACGGCGGTGGTGCGCGGCGATGTGGGCAGCGTGCGTGCGGCGGTGGATGCG
GGCGCGCTGGCGAGCCGCGACGTCGGCGAATTGATCTCGGTACATGTAATTCCACGCCCGCACGATGGCGTGTTTGATGG
AATTCTGAGTTAA

Upstream 100 bases:

>100_bases
CGACCCGACTTCCAGGCTGAACGTTCACATGGACACGGACGAAGCCAACGCCTGCGGACTGCACCTGACGAAAGATATCG
AGCTGATTAAGTAGACATAG

Downstream 100 bases:

>100_bases
GGGCGAATCATGAGCGACGCAATCGGAATGGTAGAGACCAAGGGTATGGTGCCGCTGGTGCAGGCCACGGACGCCATGCT
GAAGACGGCGAACGTGAAGT

Product: microcompartments protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MPNQQALGMIETKGLVALIEGTDSMLKAANVSFAGWVSVGSGLVTAFVQGDVGAVKAATDAGAASARKVGELASVLVISR
PHDELPNFSGAPHAPSKTARTGHQAIGLIETKGLVGLIDASDAMCKTASVELMKIIEIGGGFVTAVVRGDVGSVRAAVDA
GALASRDVGELISVHVIPRPHDGVFDGILS

Sequences:

>Translated_190_residues
MPNQQALGMIETKGLVALIEGTDSMLKAANVSFAGWVSVGSGLVTAFVQGDVGAVKAATDAGAASARKVGELASVLVISR
PHDELPNFSGAPHAPSKTARTGHQAIGLIETKGLVGLIDASDAMCKTASVELMKIIEIGGGFVTAVVRGDVGSVRAAVDA
GALASRDVGELISVHVIPRPHDGVFDGILS
>Mature_189_residues
PNQQALGMIETKGLVALIEGTDSMLKAANVSFAGWVSVGSGLVTAFVQGDVGAVKAATDAGAASARKVGELASVLVISRP
HDELPNFSGAPHAPSKTARTGHQAIGLIETKGLVGLIDASDAMCKTASVELMKIIEIGGGFVTAVVRGDVGSVRAAVDAG
ALASRDVGELISVHVIPRPHDGVFDGILS

Specific function: May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered [H]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=78, Percent_Identity=62.8205128205128, Blast_Score=88, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 19177; Mature: 19046

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNQQALGMIETKGLVALIEGTDSMLKAANVSFAGWVSVGSGLVTAFVQGDVGAVKAATD
CCCCHHCCEEECCCEEEEEECCHHHHHHHCCCEEHHHHHCCCCEEEEECCCCCEEEECCC
AGAASARKVGELASVLVISRPHDELPNFSGAPHAPSKTARTGHQAIGLIETKGLVGLIDA
CCCHHHHHHHHHHHEEEEECCHHHCCCCCCCCCCCCCHHCCCCHHEEEEECCCEEEEEEC
SDAMCKTASVELMKIIEIGGGFVTAVVRGDVGSVRAAVDAGALASRDVGELISVHVIPRP
CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEEECCC
HDGVFDGILS
CCCHHHHHCC
>Mature Secondary Structure 
PNQQALGMIETKGLVALIEGTDSMLKAANVSFAGWVSVGSGLVTAFVQGDVGAVKAATD
CCCHHCCEEECCCEEEEEECCHHHHHHHCCCEEHHHHHCCCCEEEEECCCCCEEEECCC
AGAASARKVGELASVLVISRPHDELPNFSGAPHAPSKTARTGHQAIGLIETKGLVGLIDA
CCCHHHHHHHHHHHEEEEECCHHHCCCCCCCCCCCCCHHCCCCHHEEEEECCCEEEEEEC
SDAMCKTASVELMKIIEIGGGFVTAVVRGDVGSVRAAVDAGALASRDVGELISVHVIPRP
CCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEEEECCC
HDGVFDGILS
CCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2509426 [H]