Click here to switch to the map view.

The map label for this gene is ntcA [H]

Identifier: 116620437

GI number: 116620437

Start: 1624847

End: 1625524

Strand: Reverse

Name: ntcA [H]

Synonym: Acid_1315

Alternate gene names: 116620437

Gene position: 1625524-1624847 (Counterclockwise)

Preceding gene: 116620438

Following gene: 116620432

Centisome position: 16.31

GC content: 55.9

Gene sequence:

>678_bases
ATGGCATCCAGTCTGACGGCATTCACGCCACAACCTAAGACACTCGAAGATCCTCTAGCTCATCTCCCTTGCTCCACCAT
CGTGGAGTACCGCAAAGGCCAGATGATCTACAACCAGGACCAACCCTCCACCAGTATTTACCTGGTGATTGAAGGGAAAG
TAAAGATTTCACGGCTTGCGGACGACGGACATCAAGTGGTGGTGGACATCTACCAGTCCGACGAATTTTTCGGAGAATCC
GCATTCCTGAACCTGCCTCACCGGAGCGAACAGGCCACCGCTCTGGAGAACACCAAGTTGATGACCTGGACAGCTTCGGA
AATCGAAGAGATCGTCATGCATCGCCCGTTGCTTGCGGTGGCGCTCCTGCAGATTCTGGTACAGCGCACAATCGACTTCA
CCCATCGCATCGAGAGTTTTAGCGTAGACAACATTGCCCGCCGTCTGGCCCGGTCCCTCATCCGCTTCTCGGAGCGCTTG
GGAACCGCCGATGAGGATGGCTCGGTGTCCATGGCGCCGTTCACTCATGAACTGCTCTCCCAGTACGTGGGTACGTCGCG
CGAGATTGTCACGCACTATATGAATCAGTTCCGCCGCCAGGGTTACCTGCGGTATTCGCGTAAAGGCATTGTGCTCTATC
GCGAAGCCTTCCGTGAATGGCTGCGCGCCAACGCCTAG

Upstream 100 bases:

>100_bases
TTTTCACGTTCGGAGTATCGAAACCCTCAGCGATACATGTGCGCCGCAGCAACAAGGAAAACAATAGGCGCTTTTTAGAG
CGCGTGGAGGAGACAAAAAC

Downstream 100 bases:

>100_bases
TCCGATTCCGCGGGCCGGGTTCCTTCCCGGCCCGCATCCTTCTACCAGCCGCGGTCAGCGGCAATCTTCCGCTGAATCTC
CGTCGCCAGACGGCTCCCGC

Product: Crp/FNR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MASSLTAFTPQPKTLEDPLAHLPCSTIVEYRKGQMIYNQDQPSTSIYLVIEGKVKISRLADDGHQVVVDIYQSDEFFGES
AFLNLPHRSEQATALENTKLMTWTASEIEEIVMHRPLLAVALLQILVQRTIDFTHRIESFSVDNIARRLARSLIRFSERL
GTADEDGSVSMAPFTHELLSQYVGTSREIVTHYMNQFRRQGYLRYSRKGIVLYREAFREWLRANA

Sequences:

>Translated_225_residues
MASSLTAFTPQPKTLEDPLAHLPCSTIVEYRKGQMIYNQDQPSTSIYLVIEGKVKISRLADDGHQVVVDIYQSDEFFGES
AFLNLPHRSEQATALENTKLMTWTASEIEEIVMHRPLLAVALLQILVQRTIDFTHRIESFSVDNIARRLARSLIRFSERL
GTADEDGSVSMAPFTHELLSQYVGTSREIVTHYMNQFRRQGYLRYSRKGIVLYREAFREWLRANA
>Mature_224_residues
ASSLTAFTPQPKTLEDPLAHLPCSTIVEYRKGQMIYNQDQPSTSIYLVIEGKVKISRLADDGHQVVVDIYQSDEFFGESA
FLNLPHRSEQATALENTKLMTWTASEIEEIVMHRPLLAVALLQILVQRTIDFTHRIESFSVDNIARRLARSLIRFSERLG
TADEDGSVSMAPFTHELLSQYVGTSREIVTHYMNQFRRQGYLRYSRKGIVLYREAFREWLRANA

Specific function: Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control [H]

COG id: COG0664

COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH crp-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018490
- InterPro:   IPR000595
- InterPro:   IPR001808
- InterPro:   IPR012318
- InterPro:   IPR014710
- InterPro:   IPR018335
- InterPro:   IPR022299
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00027 cNMP_binding; PF00325 Crp [H]

EC number: NA

Molecular weight: Translated: 25844; Mature: 25713

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50042 CNMP_BINDING_3 ; PS51063 HTH_CRP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSLTAFTPQPKTLEDPLAHLPCSTIVEYRKGQMIYNQDQPSTSIYLVIEGKVKISRLA
CCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCEEECCCCCCCEEEEEEECCEEEEECC
DDGHQVVVDIYQSDEFFGESAFLNLPHRSEQATALENTKLMTWTASEIEEIVMHRPLLAV
CCCCEEEEEEECCCCCCCCCCEEECCCCCCHHHHHCCCEEEEEEHHHHHHHHHHCHHHHH
ALLQILVQRTIDFTHRIESFSVDNIARRLARSLIRFSERLGTADEDGSVSMAPFTHELLS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHH
QYVGTSREIVTHYMNQFRRQGYLRYSRKGIVLYREAFREWLRANA
HHHCCHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASSLTAFTPQPKTLEDPLAHLPCSTIVEYRKGQMIYNQDQPSTSIYLVIEGKVKISRLA
CCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCEEECCCCCCCEEEEEEECCEEEEECC
DDGHQVVVDIYQSDEFFGESAFLNLPHRSEQATALENTKLMTWTASEIEEIVMHRPLLAV
CCCCEEEEEEECCCCCCCCCCEEECCCCCCHHHHHCCCEEEEEEHHHHHHHHHHCHHHHH
ALLQILVQRTIDFTHRIESFSVDNIARRLARSLIRFSERLGTADEDGSVSMAPFTHELLS
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHH
QYVGTSREIVTHYMNQFRRQGYLRYSRKGIVLYREAFREWLRANA
HHHCCHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1630321 [H]