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The map label for this gene is ctpA [H]

Identifier: 116620330

GI number: 116620330

Start: 1489592

End: 1491166

Strand: Direct

Name: ctpA [H]

Synonym: Acid_1207

Alternate gene names: 116620330

Gene position: 1489592-1491166 (Clockwise)

Preceding gene: 116620329

Following gene: 116620333

Centisome position: 14.95

GC content: 61.52

Gene sequence:

>1575_bases
ATGAAAATTCGGACTTCTTTACAGCTCGCCCTAATTGTCGGCGGCTGCACCGTACTGGCTCCCCTTTACGGCCCCGCCAT
CAGCGCAAGCGCGGCCACGACCCAGGACGATCTGGACAAGAACATCAAGTCCCTCGCCGGCGCTCTCTCCATTCTCGAAG
ACAACTACGCCGACAAGATCTCCTCCGAAAAAGCGATCTATCAGGGCGCCATCCCCGGCATGCTGCGCACCCTGGATCCC
CACTCCAATTTCCTCGATCCCAGCGAATACCAGGACATGCAGCGCAAACAGCGCGCCCAGTATTTCGGGATCGGCATGCT
GATCTCCATGGACGGCCCCAAGGTGATCGCGATGGAGCCCTTCCCCGGCTCTCCCGCCTGGCGCGCCGACCTCCGCCGCG
GTGACGTCATCGTCGCCGTCGATGGCAATGATGTCACCAAGAAGGATTCCAGTGCCGTCGCCGATCTGCTCCGCGGACCG
CGCGGCAGCCAGGTGCGCGTCAGCGTGATGCGCGAAGGCGCCCCCGCGCCGGTCACCGTCACCGTCACCCGCGGTGAAAT
CGAAACCAGCCTCGTCGATGCCTTCTGGATCAAACCCGGCATCGCCTTCCTCAAAGTCACCAGCTTCGAAGCCCAGAACG
TCGCGCGCGACGTGGAAGCCGCCATGCAGAAACTCGGCGAAGCCAACGTCAAAGGTCTCATCCTCGACCTTCGCGAGAAT
CGCGGCGGCCTCGTCACCGAAGCCGTCTCGCTCGCTGGACGCTTCCTCCGTGACGGCCAGGTCGTAGTCTCCCACCGCGG
CCGCGCCGAAAAGGAACAGGTCTTCCGCGCCAATAAGGCCAACCCCGCCGCGCAGAAATATCCCATCGTGGTCCTGGTCA
ACGGCAACTCCGCTTCCGCCTCGGAAATCGTCTCCGGCGCGCTGCAGGATCATGATCGCGCTCTGATTATGGGCGAAACC
ACTTTCGGTAAAGGCCTCGTACAGGCCCAGTTCCCGCTCTCCGAGGGCGCCCTGCTGCTCACCATCGCCCACTACTACAC
GCCCAGCGGACGCCTCATCCAGCGCGACTATTCCAAGGGCTCGTTCTTCGATTACTATTACGCCCGCAAGCCCATCCAGA
ACAGCGACGACATCAAGGCCACCGACACCGGCCGCAAGATGTATGGCGGTGGCGGCATCACCCCCGACGAAAAGTACGAT
CCCGAAAAATCCACGATGTTCGAGCGCCGCGTTTTCAGCTCCTCGATCATCTACCGCTTCGCCAACAGTTACTTCGGAGC
GGCCAAGCCTTCTCTGCCGGCCAACTGGACTCCCGACGCCGACCTTCTGTCGCGCTTCAAGGACTATCTGCATACCAAGA
ACGTCGCCTTCACGGACGCCGAATTCAATCGCGATAAGAAGTGGATCACCGAACAAATCCGCGACGAGTTCTACCTCCGC
GCCTTCGACAAAAAGACCTCTGACCGCGCTCAATTCCTGGATGACCCCGAAGTCCACCAGGCCGTCGAGAGCCTTCCGAA
GGCCGAAGCAATGCACGCCGAAGCGCAAAAGGTAATGGCCGCCCGTCGCCAGTAG

Upstream 100 bases:

>100_bases
TGAGCCCCCTCATTAAACTGAAAATTTGCAACCGTTCCAGGGGGTTTTCGAGTCTACTATAGTGTTAAGGGAAGCGTTTT
CGCCGCCCCGGGGGTAATTC

Downstream 100 bases:

>100_bases
GGCGCGCGCGCCGTGTATTACTGTGCATTTGTCTGCTCGCAGGCCGCGAAGAACTCCCGAGTAAACGAGCCGCGACCGTA
AGGGAGCGTCCGTTTGTACT

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MKIRTSLQLALIVGGCTVLAPLYGPAISASAATTQDDLDKNIKSLAGALSILEDNYADKISSEKAIYQGAIPGMLRTLDP
HSNFLDPSEYQDMQRKQRAQYFGIGMLISMDGPKVIAMEPFPGSPAWRADLRRGDVIVAVDGNDVTKKDSSAVADLLRGP
RGSQVRVSVMREGAPAPVTVTVTRGEIETSLVDAFWIKPGIAFLKVTSFEAQNVARDVEAAMQKLGEANVKGLILDLREN
RGGLVTEAVSLAGRFLRDGQVVVSHRGRAEKEQVFRANKANPAAQKYPIVVLVNGNSASASEIVSGALQDHDRALIMGET
TFGKGLVQAQFPLSEGALLLTIAHYYTPSGRLIQRDYSKGSFFDYYYARKPIQNSDDIKATDTGRKMYGGGGITPDEKYD
PEKSTMFERRVFSSSIIYRFANSYFGAAKPSLPANWTPDADLLSRFKDYLHTKNVAFTDAEFNRDKKWITEQIRDEFYLR
AFDKKTSDRAQFLDDPEVHQAVESLPKAEAMHAEAQKVMAARRQ

Sequences:

>Translated_524_residues
MKIRTSLQLALIVGGCTVLAPLYGPAISASAATTQDDLDKNIKSLAGALSILEDNYADKISSEKAIYQGAIPGMLRTLDP
HSNFLDPSEYQDMQRKQRAQYFGIGMLISMDGPKVIAMEPFPGSPAWRADLRRGDVIVAVDGNDVTKKDSSAVADLLRGP
RGSQVRVSVMREGAPAPVTVTVTRGEIETSLVDAFWIKPGIAFLKVTSFEAQNVARDVEAAMQKLGEANVKGLILDLREN
RGGLVTEAVSLAGRFLRDGQVVVSHRGRAEKEQVFRANKANPAAQKYPIVVLVNGNSASASEIVSGALQDHDRALIMGET
TFGKGLVQAQFPLSEGALLLTIAHYYTPSGRLIQRDYSKGSFFDYYYARKPIQNSDDIKATDTGRKMYGGGGITPDEKYD
PEKSTMFERRVFSSSIIYRFANSYFGAAKPSLPANWTPDADLLSRFKDYLHTKNVAFTDAEFNRDKKWITEQIRDEFYLR
AFDKKTSDRAQFLDDPEVHQAVESLPKAEAMHAEAQKVMAARRQ
>Mature_524_residues
MKIRTSLQLALIVGGCTVLAPLYGPAISASAATTQDDLDKNIKSLAGALSILEDNYADKISSEKAIYQGAIPGMLRTLDP
HSNFLDPSEYQDMQRKQRAQYFGIGMLISMDGPKVIAMEPFPGSPAWRADLRRGDVIVAVDGNDVTKKDSSAVADLLRGP
RGSQVRVSVMREGAPAPVTVTVTRGEIETSLVDAFWIKPGIAFLKVTSFEAQNVARDVEAAMQKLGEANVKGLILDLREN
RGGLVTEAVSLAGRFLRDGQVVVSHRGRAEKEQVFRANKANPAAQKYPIVVLVNGNSASASEIVSGALQDHDRALIMGET
TFGKGLVQAQFPLSEGALLLTIAHYYTPSGRLIQRDYSKGSFFDYYYARKPIQNSDDIKATDTGRKMYGGGGITPDEKYD
PEKSTMFERRVFSSSIIYRFANSYFGAAKPSLPANWTPDADLLSRFKDYLHTKNVAFTDAEFNRDKKWITEQIRDEFYLR
AFDKKTSDRAQFLDDPEVHQAVESLPKAEAMHAEAQKVMAARRQ

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=327, Percent_Identity=32.1100917431193, Blast_Score=134, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 57724; Mature: 57724

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRTSLQLALIVGGCTVLAPLYGPAISASAATTQDDLDKNIKSLAGALSILEDNYADKI
CCCCCCEEEEEEECCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
SSEKAIYQGAIPGMLRTLDPHSNFLDPSEYQDMQRKQRAQYFGIGMLISMDGPKVIAMEP
CCCHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECC
FPGSPAWRADLRRGDVIVAVDGNDVTKKDSSAVADLLRGPRGSQVRVSVMREGAPAPVTV
CCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEE
TVTRGEIETSLVDAFWIKPGIAFLKVTSFEAQNVARDVEAAMQKLGEANVKGLILDLREN
EEECCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
RGGLVTEAVSLAGRFLRDGQVVVSHRGRAEKEQVFRANKANPAAQKYPIVVLVNGNSASA
CCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCHHHCCEEEEECCCCCCH
SEIVSGALQDHDRALIMGETTFGKGLVQAQFPLSEGALLLTIAHYYTPSGRLIQRDYSKG
HHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCEEEEEEEHCCCCCCEEEECCCCC
SFFDYYYARKPIQNSDDIKATDTGRKMYGGGGITPDEKYDPEKSTMFERRVFSSSIIYRF
CEEEHHHHCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ANSYFGAAKPSLPANWTPDADLLSRFKDYLHTKNVAFTDAEFNRDKKWITEQIRDEFYLR
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHH
AFDKKTSDRAQFLDDPEVHQAVESLPKAEAMHAEAQKVMAARRQ
HHCCCCCCHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIRTSLQLALIVGGCTVLAPLYGPAISASAATTQDDLDKNIKSLAGALSILEDNYADKI
CCCCCCEEEEEEECCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
SSEKAIYQGAIPGMLRTLDPHSNFLDPSEYQDMQRKQRAQYFGIGMLISMDGPKVIAMEP
CCCHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECC
FPGSPAWRADLRRGDVIVAVDGNDVTKKDSSAVADLLRGPRGSQVRVSVMREGAPAPVTV
CCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEE
TVTRGEIETSLVDAFWIKPGIAFLKVTSFEAQNVARDVEAAMQKLGEANVKGLILDLREN
EEECCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
RGGLVTEAVSLAGRFLRDGQVVVSHRGRAEKEQVFRANKANPAAQKYPIVVLVNGNSASA
CCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCHHHCCEEEEECCCCCCH
SEIVSGALQDHDRALIMGETTFGKGLVQAQFPLSEGALLLTIAHYYTPSGRLIQRDYSKG
HHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCEEEEEEEHCCCCCCEEEECCCCC
SFFDYYYARKPIQNSDDIKATDTGRKMYGGGGITPDEKYDPEKSTMFERRVFSSSIIYRF
CEEEHHHHCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ANSYFGAAKPSLPANWTPDADLLSRFKDYLHTKNVAFTDAEFNRDKKWITEQIRDEFYLR
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHH
AFDKKTSDRAQFLDDPEVHQAVESLPKAEAMHAEAQKVMAARRQ
HHCCCCCCHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]