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The map label for this gene is ytrP [H]

Identifier: 116620302

GI number: 116620302

Start: 1450115

End: 1451308

Strand: Direct

Name: ytrP [H]

Synonym: Acid_1179

Alternate gene names: 116620302

Gene position: 1450115-1451308 (Clockwise)

Preceding gene: 116620301

Following gene: 116620304

Centisome position: 14.55

GC content: 62.14

Gene sequence:

>1194_bases
ATGGACCCTTCCAGCCCCGTTGCGGATCTCACCGCATTCTATATTCAGGAAATCGGGGCACTGCTTTTCGGAACGGTGTT
CTTATTTCTTTGGCGCCAGTCGCGGGTGGTCTTCTTCGGTCTCTGGTCGGTCGCCTGGCTGCTGCGGCTTCTGGCCGCGT
TTTTCGGGTTCCAACTTCTGCGCACGCAGCACCCGGGATGGCTGGCTCCCTATGCGACCTTTGAATTCGCCTTCGCCATC
GTGCTGATCTCGGCGGCGCGCGCCGGCTTCGCCTCCAGCATGAAAGACTGGCGAACCGTACTGCGGCTAATTTCGATTCT
TCCCATTTTTGTGGCGCTGGTCTGGGCGGTGGGACAGTACTCCGGGCTGGGCTCCTACCACGCATCGCACGCCGTGGTGC
TGGGCTTCGTCTACATGTATAACTTCTTCACCCTGCGCAAGACCATTGGGTTGGGCGCGCGGTTTTTCCGCTTTTCACTA
TTCCTGCTGGCGGTGGCGTTCTTCGAGCACGCCCTCATTTTCGTGTACCTGTACAATCGCGGCGGCGCGCCGGCTTGGGC
CGTTTACCTGCATCACGAGACCTACGTCGATTTCGTGCTGCACTGCGTGCTGGCATTTGCCGCCATGGCCATGTGGAGCG
AGAGCCAGATCGACCGCATCGGCGACTTGATGGGCGAGCTCGACCACCTGCGCCGCGAACGCAAACACACTTTCGACCTC
GACCGTCTCACCGGGCTCTTCAATCAGGCGGCGCTGGCGCGTCGCGTGGAGGAGGCAGAGGGATTCGAGGGCGTGGTAGT
GGTCTGCGACATGGATAATTTTAAGGACGTCAACGACCGCTACGGCCATCTGGTGGGCGATGAGATCCTGCGCAATATCG
GCAAGCTGCTGCAGTCTTCGATCCGCCCCGAGGATGAGGCCTTCCGCTGGGGCGGCGACGAGTTCGTCATCCTCTTCCGG
AAGCAGTTGACCGATGTCGCCGCGCGCCGCATGGCGGATATCGAGAACCGGTTGCGCGATTTCCGGGTCCGCGGGCTCGG
CGTCCTGCCGATTACCTTCAGTTGGGGAACTGCCGAAACCGCCGGCCACCCGCTCCGGGAAGCGCTGGATGAGGCCGACC
AGAAGATGTACGCCTGCAAGCGCATACGCGCCGCCGAAAGCGCCTCGGGCGCACGCCCCCCGGCGACACGCTAA

Upstream 100 bases:

>100_bases
CGGCATGGGGCGGAGTTGCATGCGGTGATCGTGGATGTGGACGAGGCCACGGGGAAGGCACGTGCCGTCCGGCGGCACGC
GATCAACGGAGACTGAACCG

Downstream 100 bases:

>100_bases
ATTCCTCGATTACGCCGGTACCCCGCCCGCTCGCACCGCCCCATCCGCGACCGTTAGGGAGTCGTCGGTATTGCCGACCG
ACTCCTACTGGACGTAGATG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MDPSSPVADLTAFYIQEIGALLFGTVFLFLWRQSRVVFFGLWSVAWLLRLLAAFFGFQLLRTQHPGWLAPYATFEFAFAI
VLISAARAGFASSMKDWRTVLRLISILPIFVALVWAVGQYSGLGSYHASHAVVLGFVYMYNFFTLRKTIGLGARFFRFSL
FLLAVAFFEHALIFVYLYNRGGAPAWAVYLHHETYVDFVLHCVLAFAAMAMWSESQIDRIGDLMGELDHLRRERKHTFDL
DRLTGLFNQAALARRVEEAEGFEGVVVVCDMDNFKDVNDRYGHLVGDEILRNIGKLLQSSIRPEDEAFRWGGDEFVILFR
KQLTDVAARRMADIENRLRDFRVRGLGVLPITFSWGTAETAGHPLREALDEADQKMYACKRIRAAESASGARPPATR

Sequences:

>Translated_397_residues
MDPSSPVADLTAFYIQEIGALLFGTVFLFLWRQSRVVFFGLWSVAWLLRLLAAFFGFQLLRTQHPGWLAPYATFEFAFAI
VLISAARAGFASSMKDWRTVLRLISILPIFVALVWAVGQYSGLGSYHASHAVVLGFVYMYNFFTLRKTIGLGARFFRFSL
FLLAVAFFEHALIFVYLYNRGGAPAWAVYLHHETYVDFVLHCVLAFAAMAMWSESQIDRIGDLMGELDHLRRERKHTFDL
DRLTGLFNQAALARRVEEAEGFEGVVVVCDMDNFKDVNDRYGHLVGDEILRNIGKLLQSSIRPEDEAFRWGGDEFVILFR
KQLTDVAARRMADIENRLRDFRVRGLGVLPITFSWGTAETAGHPLREALDEADQKMYACKRIRAAESASGARPPATR
>Mature_397_residues
MDPSSPVADLTAFYIQEIGALLFGTVFLFLWRQSRVVFFGLWSVAWLLRLLAAFFGFQLLRTQHPGWLAPYATFEFAFAI
VLISAARAGFASSMKDWRTVLRLISILPIFVALVWAVGQYSGLGSYHASHAVVLGFVYMYNFFTLRKTIGLGARFFRFSL
FLLAVAFFEHALIFVYLYNRGGAPAWAVYLHHETYVDFVLHCVLAFAAMAMWSESQIDRIGDLMGELDHLRRERKHTFDL
DRLTGLFNQAALARRVEEAEGFEGVVVVCDMDNFKDVNDRYGHLVGDEILRNIGKLLQSSIRPEDEAFRWGGDEFVILFR
KQLTDVAARRMADIENRLRDFRVRGLGVLPITFSWGTAETAGHPLREALDEADQKMYACKRIRAAESASGARPPATR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=156, Percent_Identity=32.6923076923077, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=32.9268292682927, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081974, Length=154, Percent_Identity=30.5194805194805, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87081881, Length=168, Percent_Identity=30.952380952381, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=145, Percent_Identity=31.0344827586207, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787816, Length=149, Percent_Identity=30.8724832214765, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787541, Length=149, Percent_Identity=33.5570469798658, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI87082007, Length=157, Percent_Identity=31.8471337579618, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786584, Length=149, Percent_Identity=27.5167785234899, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 45081; Mature: 45081

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MDPSSPVADLTAFYIQEIGALLFGTVFLFLWRQSRVVFFGLWSVAWLLRLLAAFFGFQLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHHH
RTQHPGWLAPYATFEFAFAIVLISAARAGFASSMKDWRTVLRLISILPIFVALVWAVGQY
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SGLGSYHASHAVVLGFVYMYNFFTLRKTIGLGARFFRFSLFLLAVAFFEHALIFVYLYNR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHEEECC
GGAPAWAVYLHHETYVDFVLHCVLAFAAMAMWSESQIDRIGDLMGELDHLRRERKHTFDL
CCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCH
DRLTGLFNQAALARRVEEAEGFEGVVVVCDMDNFKDVNDRYGHLVGDEILRNIGKLLQSS
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IRPEDEAFRWGGDEFVILFRKQLTDVAARRMADIENRLRDFRVRGLGVLPITFSWGTAET
CCCCHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC
AGHPLREALDEADQKMYACKRIRAAESASGARPPATR
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]