The gene/protein map for NC_008258 is currently unavailable.
Definition Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome.
Accession NC_008536
Length 9,965,640

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The map label for this gene is skfE [H]

Identifier: 116620249

GI number: 116620249

Start: 1385512

End: 1386228

Strand: Reverse

Name: skfE [H]

Synonym: Acid_1126

Alternate gene names: 116620249

Gene position: 1386228-1385512 (Counterclockwise)

Preceding gene: 116620252

Following gene: 116620248

Centisome position: 13.91

GC content: 66.81

Gene sequence:

>717_bases
ATGCTGTTCGAGGTTAAGGGTCTTTCCAAACAATTCGGCCGCATAGCCGCGCTCTCGGACGTCGCCTTTCACGTCCGCGA
AGGCGAAGTACTGGGACTCATCGGCCCCAACGGCGCCGGCAAATCCACCCTCTTCGAATGCCTCGCCGGAGTCCTGCCCT
CCGACCGCGGCAGTATGCTCGCCGGCGGCCGAGCCATCGGCATTCACGACCGCCGCTCCCTGCTCTTCTACGTTCCCGAC
GGCATCGCCCCGTGGCCGGCCCAGTCCGTCGGCTGGGCGCTCGATTTCACCATCGGCTTCCTGCGCGGCCGCGCCGACCT
TCGCGAGGAAGTCGTCGCCCAACTCGATCTCCTCGGGCTGCTCAACCAGCCCATCGGCACGCTCTCAAAGGGACAGCGCA
AACGCGCCCTGCTTGCCATCGGCCTGCTAACGCCCCAGCCCGCCCTGCTCATCGACGAACCCTTCGAAGGCCTCGACCTC
CGCCAGGCCCGCGACATCGCCGCCGCATTACGCGTACATGCCTCCCGTGGACGCACGCTCTTCCTCTCCATCCACCAGAT
CAGCGACGCCGCCCGATTCTGCGATCGCTTCGTCCTTCTCAGCAGCGGCCGCGTCTGCGGCGAAGGCACCGTCCCCGAAC
TCGCCGCCTTGGCGGCGGCGCAACACGCGTCCGTTCCGTCCGGCGATCTCGAAGAGGTATTCCTTGCGCTCACCTAG

Upstream 100 bases:

>100_bases
TGCAAAACTCTACCATTCTACCGTGCCCTCCGAACGGGCCGTACCATGATTACTATCGGAAGTAGTAGCCAGCCCCGGCA
TAGTATCGTTGAGTGAATCG

Downstream 100 bases:

>100_bases
GCCGCCATTCTTCTGGCTCCTAAACAAGGAATGCCGCGAGCTCATCGTCTCCCGCGCCTGGTGGGTGCTGCTGCTTTGCA
TGGGGCCGCTGGTCGGCGTC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MLFEVKGLSKQFGRIAALSDVAFHVREGEVLGLIGPNGAGKSTLFECLAGVLPSDRGSMLAGGRAIGIHDRRSLLFYVPD
GIAPWPAQSVGWALDFTIGFLRGRADLREEVVAQLDLLGLLNQPIGTLSKGQRKRALLAIGLLTPQPALLIDEPFEGLDL
RQARDIAAALRVHASRGRTLFLSIHQISDAARFCDRFVLLSSGRVCGEGTVPELAALAAAQHASVPSGDLEEVFLALT

Sequences:

>Translated_238_residues
MLFEVKGLSKQFGRIAALSDVAFHVREGEVLGLIGPNGAGKSTLFECLAGVLPSDRGSMLAGGRAIGIHDRRSLLFYVPD
GIAPWPAQSVGWALDFTIGFLRGRADLREEVVAQLDLLGLLNQPIGTLSKGQRKRALLAIGLLTPQPALLIDEPFEGLDL
RQARDIAAALRVHASRGRTLFLSIHQISDAARFCDRFVLLSSGRVCGEGTVPELAALAAAQHASVPSGDLEEVFLALT
>Mature_238_residues
MLFEVKGLSKQFGRIAALSDVAFHVREGEVLGLIGPNGAGKSTLFECLAGVLPSDRGSMLAGGRAIGIHDRRSLLFYVPD
GIAPWPAQSVGWALDFTIGFLRGRADLREEVVAQLDLLGLLNQPIGTLSKGQRKRALLAIGLLTPQPALLIDEPFEGLDL
RQARDIAAALRVHASRGRTLFLSIHQISDAARFCDRFVLLSSGRVCGEGTVPELAALAAAQHASVPSGDLEEVFLALT

Specific function: Part of the ABC transporter SkfEF involved in the export of the bacteriocin SkfA. Responsible for energy coupling to the transport system (Probable) [H]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI6005701, Length=214, Percent_Identity=32.2429906542056, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI27436953, Length=214, Percent_Identity=31.7757009345794, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI27262624, Length=218, Percent_Identity=28.4403669724771, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI27262626, Length=218, Percent_Identity=28.4403669724771, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI153792144, Length=207, Percent_Identity=29.951690821256, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI27477115, Length=214, Percent_Identity=29.9065420560748, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI46592978, Length=213, Percent_Identity=29.1079812206573, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI46592915, Length=212, Percent_Identity=29.2452830188679, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI46592971, Length=213, Percent_Identity=29.1079812206573, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI46592898, Length=212, Percent_Identity=29.2452830188679, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI46592956, Length=212, Percent_Identity=29.2452830188679, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI46592964, Length=213, Percent_Identity=29.1079812206573, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI215820660, Length=193, Percent_Identity=31.6062176165803, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI20143975, Length=193, Percent_Identity=31.6062176165803, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI11967969, Length=227, Percent_Identity=28.6343612334802, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI45446740, Length=213, Percent_Identity=26.7605633802817, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI47078218, Length=213, Percent_Identity=26.7605633802817, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI105990541, Length=220, Percent_Identity=30, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI21536376, Length=222, Percent_Identity=26.1261261261261, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI116734710, Length=224, Percent_Identity=30.8035714285714, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI150417984, Length=238, Percent_Identity=26.0504201680672, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI108773784, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI108773782, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI27881501, Length=199, Percent_Identity=25.1256281407035, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI30795238, Length=199, Percent_Identity=25.1256281407035, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1790739, Length=225, Percent_Identity=29.7777777777778, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87081782, Length=244, Percent_Identity=31.1475409836066, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI48994943, Length=245, Percent_Identity=29.7959183673469, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790544, Length=244, Percent_Identity=27.8688524590164, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786563, Length=207, Percent_Identity=31.8840579710145, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786253, Length=200, Percent_Identity=33, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789593, Length=221, Percent_Identity=28.9592760180996, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1790467, Length=223, Percent_Identity=28.2511210762332, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1786345, Length=201, Percent_Identity=31.3432835820896, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788897, Length=228, Percent_Identity=27.6315789473684, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788472, Length=218, Percent_Identity=26.605504587156, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786319, Length=221, Percent_Identity=26.6968325791855, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788761, Length=215, Percent_Identity=27.906976744186, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786803, Length=220, Percent_Identity=25.9090909090909, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=24.7863247863248, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788450, Length=218, Percent_Identity=30.2752293577982, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI48995001, Length=218, Percent_Identity=27.5229357798165, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1788165, Length=225, Percent_Identity=30.6666666666667, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=25.4385964912281, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787547, Length=240, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082268, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788002, Length=207, Percent_Identity=32.3671497584541, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787792, Length=219, Percent_Identity=24.2009132420091, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786872, Length=220, Percent_Identity=26.8181818181818, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790525, Length=228, Percent_Identity=26.7543859649123, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788210, Length=210, Percent_Identity=26.6666666666667, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1787712, Length=209, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787164, Length=215, Percent_Identity=26.9767441860465, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787089, Length=223, Percent_Identity=26.457399103139, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789032, Length=226, Percent_Identity=29.2035398230088, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789991, Length=212, Percent_Identity=25.9433962264151, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367384, Length=172, Percent_Identity=30.8139534883721, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786975, Length=193, Percent_Identity=29.5336787564767, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787758, Length=210, Percent_Identity=24.7619047619048, Blast_Score=60, Evalue=9e-11,
Organism=Escherichia coli, GI87081791, Length=238, Percent_Identity=25.2100840336134, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=233, Percent_Identity=28.755364806867, Blast_Score=84, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71983516, Length=233, Percent_Identity=28.755364806867, Blast_Score=84, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71983510, Length=233, Percent_Identity=28.755364806867, Blast_Score=84, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17510237, Length=219, Percent_Identity=27.3972602739726, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17539902, Length=222, Percent_Identity=29.2792792792793, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI115533608, Length=196, Percent_Identity=29.0816326530612, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=204, Percent_Identity=27.4509803921569, Blast_Score=67, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6320339, Length=207, Percent_Identity=25.6038647342995, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24666092, Length=226, Percent_Identity=31.858407079646, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI19920532, Length=213, Percent_Identity=32.3943661971831, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24580930, Length=213, Percent_Identity=32.3943661971831, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI161076682, Length=230, Percent_Identity=30.4347826086957, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI161076684, Length=230, Percent_Identity=30.4347826086957, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24581617, Length=230, Percent_Identity=30.4347826086957, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24581615, Length=230, Percent_Identity=30.4347826086957, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28574150, Length=212, Percent_Identity=29.7169811320755, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI116007328, Length=212, Percent_Identity=29.7169811320755, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI116007184, Length=221, Percent_Identity=26.6968325791855, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI221500365, Length=221, Percent_Identity=26.6968325791855, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24648314, Length=223, Percent_Identity=28.2511210762332, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI28574533, Length=208, Percent_Identity=27.4038461538462, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI85816269, Length=221, Percent_Identity=28.0542986425339, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24580553, Length=221, Percent_Identity=28.0542986425339, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI85724864, Length=221, Percent_Identity=28.0542986425339, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24580555, Length=221, Percent_Identity=28.0542986425339, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221512771, Length=213, Percent_Identity=27.2300469483568, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28573573, Length=216, Percent_Identity=25, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28573571, Length=216, Percent_Identity=25, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24643674, Length=215, Percent_Identity=27.906976744186, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24581191, Length=194, Percent_Identity=29.3814432989691, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24581189, Length=194, Percent_Identity=29.3814432989691, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24581193, Length=194, Percent_Identity=29.3814432989691, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24581195, Length=194, Percent_Identity=29.3814432989691, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI17136592, Length=243, Percent_Identity=27.9835390946502, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI28574744, Length=173, Percent_Identity=31.2138728323699, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI281362751, Length=248, Percent_Identity=27.8225806451613, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24650853, Length=248, Percent_Identity=27.8225806451613, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24650855, Length=248, Percent_Identity=27.8225806451613, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI45552199, Length=208, Percent_Identity=31.7307692307692, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24581407, Length=208, Percent_Identity=31.7307692307692, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17647959, Length=238, Percent_Identity=31.5126050420168, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.25 [H]

Molecular weight: Translated: 25385; Mature: 25385

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MLFEVKGLSKQFGRIAALSDVAFHVREGEVLGLIGPNGAGKSTLFECLAGVLPSDRGSML
CEEECCCHHHHHHHHHHHHHHHEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEE
AGGRAIGIHDRRSLLFYVPDGIAPWPAQSVGWALDFTIGFLRGRADLREEVVAQLDLLGL
ECCEEEEEECCCEEEEEECCCCCCCCCCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHHH
LNQPIGTLSKGQRKRALLAIGLLTPQPALLIDEPFEGLDLRQARDIAAALRVHASRGRTL
HCCCCCHHCCCCHHEEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEE
FLSIHQISDAARFCDRFVLLSSGRVCGEGTVPELAALAAAQHASVPSGDLEEVFLALT
EEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHEECC
>Mature Secondary Structure
MLFEVKGLSKQFGRIAALSDVAFHVREGEVLGLIGPNGAGKSTLFECLAGVLPSDRGSML
CEEECCCHHHHHHHHHHHHHHHEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEE
AGGRAIGIHDRRSLLFYVPDGIAPWPAQSVGWALDFTIGFLRGRADLREEVVAQLDLLGL
ECCEEEEEECCCEEEEEECCCCCCCCCCCCCEEHHHHHHHHHCHHHHHHHHHHHHHHHHH
LNQPIGTLSKGQRKRALLAIGLLTPQPALLIDEPFEGLDLRQARDIAAALRVHASRGRTL
HCCCCCHHCCCCHHEEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEE
FLSIHQISDAARFCDRFVLLSSGRVCGEGTVPELAALAAAQHASVPSGDLEEVFLALT
EEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]