Click here to switch to the map view.

The map label for this gene is ybfM [H]

Identifier: 116620229

GI number: 116620229

Start: 1359271

End: 1359870

Strand: Direct

Name: ybfM [H]

Synonym: Acid_1106

Alternate gene names: 116620229

Gene position: 1359271-1359870 (Clockwise)

Preceding gene: 116620228

Following gene: 116620231

Centisome position: 13.64

GC content: 63.17

Gene sequence:

>600_bases
ATGGAACAGCAGGTCCTCACCTGGATCTCGCAGTATGGCTACATCGCCATCTTCTTTCTGCTCGTCTTCGGCATCGTCGG
CCTCCCCGTGCCCGACGAAACCCTGCTCACCTTCACCGGCTACCTCGTCTACCAGGGACATCTCTCGCTGCCCCTCGCCT
TCCTCAGCGCCTTCACCGGCAGCGTTTGCGGCATCACCCTCAGTTACGTCCTCGGCCGGACCTTCGGTCTCGGCCTGATC
CACCGCTATGGCAGGTATCTTCACATCACCCATGCCCACGTCGAAAAGGCGCACGAGTTCTTCCGCCGCGCCGGGCACTG
GAGCCTCACCTTCGGCTACTTCGTCCCCGGCGTGCGCCACTTCACCGCCTACGCCGCCGGCATGAGCGAACTCGAGTACC
CCACCTTCGCGCTTTATGCGTACGCCGGCGCCGCCATCTGGGCCGGCACCTTCATCGGCCTCGGCTACTTCCTTGGCGAA
CGCTGGAAAGACGTGCAGGGCCACCTGGAGGCCTACCTGCTCGGCGGCGTGATCGCCTCCGTTATTCTTGTGCTTGCGTA
TCTGGTCTGGCGAAAGTGGTTCCGGGCGAAGCGTACGTAA

Upstream 100 bases:

>100_bases
CAAGCCGTTTCCCAATTTGTGGGGCGTCCAATCCTGGCTGCTCTACACTCCCGTCACCGAGCCATCCCTCTTCCGCTGTC
TTCAAGGTAAGGATTCCTAA

Downstream 100 bases:

>100_bases
TGATCAGCGCCGTTACCATCACCACCGCGCACCCGATCACGTTGTACCAGAGCCACGAGACATCCGTGAACCACGCCGTC
GCGAAGATCGCAGCCTCGCC

Product: alkaline phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MEQQVLTWISQYGYIAIFFLLVFGIVGLPVPDETLLTFTGYLVYQGHLSLPLAFLSAFTGSVCGITLSYVLGRTFGLGLI
HRYGRYLHITHAHVEKAHEFFRRAGHWSLTFGYFVPGVRHFTAYAAGMSELEYPTFALYAYAGAAIWAGTFIGLGYFLGE
RWKDVQGHLEAYLLGGVIASVILVLAYLVWRKWFRAKRT

Sequences:

>Translated_199_residues
MEQQVLTWISQYGYIAIFFLLVFGIVGLPVPDETLLTFTGYLVYQGHLSLPLAFLSAFTGSVCGITLSYVLGRTFGLGLI
HRYGRYLHITHAHVEKAHEFFRRAGHWSLTFGYFVPGVRHFTAYAAGMSELEYPTFALYAYAGAAIWAGTFIGLGYFLGE
RWKDVQGHLEAYLLGGVIASVILVLAYLVWRKWFRAKRT
>Mature_199_residues
MEQQVLTWISQYGYIAIFFLLVFGIVGLPVPDETLLTFTGYLVYQGHLSLPLAFLSAFTGSVCGITLSYVLGRTFGLGLI
HRYGRYLHITHAHVEKAHEFFRRAGHWSLTFGYFVPGVRHFTAYAAGMSELEYPTFALYAYAGAAIWAGTFIGLGYFLGE
RWKDVQGHLEAYLLGGVIASVILVLAYLVWRKWFRAKRT

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=190, Percent_Identity=27.8947368421053, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22462; Mature: 22462

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQQVLTWISQYGYIAIFFLLVFGIVGLPVPDETLLTFTGYLVYQGHLSLPLAFLSAFTG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCHHHHHHHHHHHHC
SVCGITLSYVLGRTFGLGLIHRYGRYLHITHAHVEKAHEFFRRAGHWSLTFGYFVPGVRH
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCEEEHHHHHCHHHH
FTAYAAGMSELEYPTFALYAYAGAAIWAGTFIGLGYFLGERWKDVQGHLEAYLLGGVIAS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILVLAYLVWRKWFRAKRT
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEQQVLTWISQYGYIAIFFLLVFGIVGLPVPDETLLTFTGYLVYQGHLSLPLAFLSAFTG
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCHHHHHHHHHHHHC
SVCGITLSYVLGRTFGLGLIHRYGRYLHITHAHVEKAHEFFRRAGHWSLTFGYFVPGVRH
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCEEEHHHHHCHHHH
FTAYAAGMSELEYPTFALYAYAGAAIWAGTFIGLGYFLGERWKDVQGHLEAYLLGGVIAS
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILVLAYLVWRKWFRAKRT
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]