| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is irgA [H]
Identifier: 116620183
GI number: 116620183
Start: 1305820
End: 1307853
Strand: Direct
Name: irgA [H]
Synonym: Acid_1056
Alternate gene names: 116620183
Gene position: 1305820-1307853 (Clockwise)
Preceding gene: 116620182
Following gene: 116620184
Centisome position: 13.1
GC content: 61.8
Gene sequence:
>2034_bases ATGAAATGGCTGCGGATGGCCGCAGGGGCGGCATGGCTCATCGGCAATCTCGGCGCGCAGCGCGTGGGTGCTCCCACCGA CGACCTGACGAAACTCGGCGTCGATGAACTGTTCAGCATCGAAGTGACGAGTGTCGGGCGTAAGGCGCAAGGGCTTTCCA AGGCGCCGGCGGCGGTGTTCGTGCTCACGGCGGAGGATATCCGGCGCAGTGGGGCGACCTCGGTTCCGGAGGCCCTGCGA TGGGTGCCGGGGTTGACGGTACTCTCGCAGGACGGGCGTTCCTGGTCGATTTCGGCGCGCGGATCCACCCGGCTCTATTC CGATAAGATCCTGGTCATGATCGACGGGCGGTCGCTTTATACGCCGCTGTTCTCGGGAGTGATCTGGGACGCGGTGGATG TGCCCCTGGGGGATGTGGAGCAGATCGAGATCGTGCGCGGGCCGGGGGCGGTGATGTGGGGGCCGAACGCGGTGAATGGG GTGATCAATATCATCACCAGGCGGGCGCAATCCACCACCGGGCAACAAGTCAGCTTGGCGACTGGGAATGACTTGAGGGC CTCAGCCGAGGCACGGACGGGGAAGGCGTGGGATCGGATGGCTTATCGCGTTTGGGGCAAGTACGATTTCCGTACGCCCG GCTATGGCTCATTCGGCGATTTCAGCTTTACCAATTTTGTGTTTCGCGATCCGGCCATCCGGAATCTCGACATGGGCTCC GGCCGTATCGGCTTCCGCGTGGATGGACAGCCTGACGAGAAAGATCAGTGGATGGTACAGGGCGATGTCTACAAAGCGGA CCGGCAGGATCCGCTGGCGTTTCCGACAATCCGTCCCGCGGTGGAGCGATTGCAGGGCCATACCGACTACGAGGGGGGAT TCATTCAGGGACGATGGATCCACACGGCATCGCCGGGGAACGAGAGTGAATTTCGCTGGTCGTACGACCACAACGATTTC GACTACAGTTACGTGGCGGCAAGCCTGCAGAATGTGACCGCCGATTTGCAGAATCGTCTTCATGCCGGCGAAGGCAACGA AATCTACTGGGGCGCCGGCTTTCAACAATACTGGGACGACACCCGTTCGCAACGGTTGGTGGCCTTCGATCCGGCGAAGA GCCTCTACCGTTCCGGGTACGGCGTGCTGCGGGATGAATGGCAACTGGTTCCGGACAGGTTTCTTTGTTCCGCCGGAATC CGTGTGGACTACAATTCCTACCATCAGTTGGAATATCAGCCCAGCCTGCGTTTTCTCTACACACCGAACGCGCGTCAATC GGCCTGGGCCGCGGTCTCGCGCGCGATACGCGCGCCCAACCGGCTGGATCGCAGCTTGGAATATGACCCGGGATATAGAG CCGACTATGACTTTCCGATCCGGATGCACAGCACTGGAAGCCAGGCGCAGCTTTCCGAAGTAGCGCGAAGTGCCGAATCG GGCTACCGCTTCCAGGCCGGCCAGCGCTGGTCGATTGACGCTTCCCTTTTCTTTACCTATTTCGAACGGCTACGCGCGCT CACGTACTCCAATGTGCCGGAGATCAGCATCAGCAACGGGGTCCTGGCAATCAGCACCGTGTTGGCGACGGGCAATCTGG GCCGCGGACGTTCCTATGGAGGCGAGTTCTGGGGGATGTGGCAGGTGCGGCCGGGTTGGCGTCTGGCACCCTCGTATTCC TACGTGAGGGATACGTTCTGGCTGCCGCCTTCGTCGCCGGTTCGGATGTACAACTGGGATTTGATTCCCATGGACTTGCG CCATCAGGCGCTGCTGCGCTCGCAATTCGACATCGGCCGGCAGTGGCAGGTGGACTTGATGGCGCGCGCCCGGTCGCGGG AGCGGGCTTGGGGATTGCCCGCCGCGTTCCTGGTGGACGCGCGGGCGGCCTGGCGGTGCACGCGGAATTCGGAGGTGAGT ATTGCGCTGACCAATCTCACCGACCGTCGCGTCATCGAAGCGTCGTCGGAATCCGCGACTCCAGCGATTCCGATCCGGCG CACATTCCTGTTGAAGTGGTCGCAGCGTTTTTAG
Upstream 100 bases:
>100_bases GGGGGTGCCTGGAGATCCGGCAGGCGCCGATCACTACGGACTCCGTCGTGTATTGAGCGTGGCCCCTACTCAAAAACCGA AATCTGCCGATTAGGCAGAT
Downstream 100 bases:
>100_bases CCATTGGGCAGCCTTGTGAATCGGATTGGTAGGCGAACTCGGAGGTGGGCATGCCTGGTTCTACTGCACTTGGCGGCGTT GATCTCCGTGGACGCAACCG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 677; Mature: 677
Protein sequence:
>677_residues MKWLRMAAGAAWLIGNLGAQRVGAPTDDLTKLGVDELFSIEVTSVGRKAQGLSKAPAAVFVLTAEDIRRSGATSVPEALR WVPGLTVLSQDGRSWSISARGSTRLYSDKILVMIDGRSLYTPLFSGVIWDAVDVPLGDVEQIEIVRGPGAVMWGPNAVNG VINIITRRAQSTTGQQVSLATGNDLRASAEARTGKAWDRMAYRVWGKYDFRTPGYGSFGDFSFTNFVFRDPAIRNLDMGS GRIGFRVDGQPDEKDQWMVQGDVYKADRQDPLAFPTIRPAVERLQGHTDYEGGFIQGRWIHTASPGNESEFRWSYDHNDF DYSYVAASLQNVTADLQNRLHAGEGNEIYWGAGFQQYWDDTRSQRLVAFDPAKSLYRSGYGVLRDEWQLVPDRFLCSAGI RVDYNSYHQLEYQPSLRFLYTPNARQSAWAAVSRAIRAPNRLDRSLEYDPGYRADYDFPIRMHSTGSQAQLSEVARSAES GYRFQAGQRWSIDASLFFTYFERLRALTYSNVPEISISNGVLAISTVLATGNLGRGRSYGGEFWGMWQVRPGWRLAPSYS YVRDTFWLPPSSPVRMYNWDLIPMDLRHQALLRSQFDIGRQWQVDLMARARSRERAWGLPAAFLVDARAAWRCTRNSEVS IALTNLTDRRVIEASSESATPAIPIRRTFLLKWSQRF
Sequences:
>Translated_677_residues MKWLRMAAGAAWLIGNLGAQRVGAPTDDLTKLGVDELFSIEVTSVGRKAQGLSKAPAAVFVLTAEDIRRSGATSVPEALR WVPGLTVLSQDGRSWSISARGSTRLYSDKILVMIDGRSLYTPLFSGVIWDAVDVPLGDVEQIEIVRGPGAVMWGPNAVNG VINIITRRAQSTTGQQVSLATGNDLRASAEARTGKAWDRMAYRVWGKYDFRTPGYGSFGDFSFTNFVFRDPAIRNLDMGS GRIGFRVDGQPDEKDQWMVQGDVYKADRQDPLAFPTIRPAVERLQGHTDYEGGFIQGRWIHTASPGNESEFRWSYDHNDF DYSYVAASLQNVTADLQNRLHAGEGNEIYWGAGFQQYWDDTRSQRLVAFDPAKSLYRSGYGVLRDEWQLVPDRFLCSAGI RVDYNSYHQLEYQPSLRFLYTPNARQSAWAAVSRAIRAPNRLDRSLEYDPGYRADYDFPIRMHSTGSQAQLSEVARSAES GYRFQAGQRWSIDASLFFTYFERLRALTYSNVPEISISNGVLAISTVLATGNLGRGRSYGGEFWGMWQVRPGWRLAPSYS YVRDTFWLPPSSPVRMYNWDLIPMDLRHQALLRSQFDIGRQWQVDLMARARSRERAWGLPAAFLVDARAAWRCTRNSEVS IALTNLTDRRVIEASSESATPAIPIRRTFLLKWSQRF >Mature_677_residues MKWLRMAAGAAWLIGNLGAQRVGAPTDDLTKLGVDELFSIEVTSVGRKAQGLSKAPAAVFVLTAEDIRRSGATSVPEALR WVPGLTVLSQDGRSWSISARGSTRLYSDKILVMIDGRSLYTPLFSGVIWDAVDVPLGDVEQIEIVRGPGAVMWGPNAVNG VINIITRRAQSTTGQQVSLATGNDLRASAEARTGKAWDRMAYRVWGKYDFRTPGYGSFGDFSFTNFVFRDPAIRNLDMGS GRIGFRVDGQPDEKDQWMVQGDVYKADRQDPLAFPTIRPAVERLQGHTDYEGGFIQGRWIHTASPGNESEFRWSYDHNDF DYSYVAASLQNVTADLQNRLHAGEGNEIYWGAGFQQYWDDTRSQRLVAFDPAKSLYRSGYGVLRDEWQLVPDRFLCSAGI RVDYNSYHQLEYQPSLRFLYTPNARQSAWAAVSRAIRAPNRLDRSLEYDPGYRADYDFPIRMHSTGSQAQLSEVARSAES GYRFQAGQRWSIDASLFFTYFERLRALTYSNVPEISISNGVLAISTVLATGNLGRGRSYGGEFWGMWQVRPGWRLAPSYS YVRDTFWLPPSSPVRMYNWDLIPMDLRHQALLRSQFDIGRQWQVDLMARARSRERAWGLPAAFLVDARAAWRCTRNSEVS IALTNLTDRRVIEASSESATPAIPIRRTFLLKWSQRF
Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=139, Percent_Identity=31.6546762589928, Blast_Score=81, Evalue=3e-16, Organism=Escherichia coli, GI1790405, Length=135, Percent_Identity=35.5555555555556, Blast_Score=69, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 76389; Mature: 76389
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKWLRMAAGAAWLIGNLGAQRVGAPTDDLTKLGVDELFSIEVTSVGRKAQGLSKAPAAVF CCHHHHHCCHHHHHHCCCCHHCCCCCHHHHHCCHHHEEEEEEECCCCHHCCCCCCCCEEE VLTAEDIRRSGATSVPEALRWVPGLTVLSQDGRSWSISARGSTRLYSDKILVMIDGRSLY EEEHHHHHCCCCCCHHHHHHHCCCCEEEECCCCEEEEECCCCCEEECCEEEEEECCCHHH TPLFSGVIWDAVDVPLGDVEQIEIVRGPGAVMWGPNAVNGVINIITRRAQSTTGQQVSLA HHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEECCHHHHHHHHHHHHHHCCCCCCEEEEE TGNDLRASAEARTGKAWDRMAYRVWGKYDFRTPGYGSFGDFSFTNFVFRDPAIRNLDMGS CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC GRIGFRVDGQPDEKDQWMVQGDVYKADRQDPLAFPTIRPAVERLQGHTDYEGGFIQGRWI CEEEEEECCCCCCCCCEEEECCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEE HTASPGNESEFRWSYDHNDFDYSYVAASLQNVTADLQNRLHAGEGNEIYWGAGFQQYWDD EECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH TRSQRLVAFDPAKSLYRSGYGVLRDEWQLVPDRFLCSAGIRVDYNSYHQLEYQPSLRFLY HHCCEEEEECCHHHHHHCCCCEECCHHHCCCCHHHHHCCCEEECCCCEEEEECCCEEEEE TPNARQSAWAAVSRAIRAPNRLDRSLEYDPGYRADYDFPIRMHSTGSQAQLSEVARSAES CCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHC GYRFQAGQRWSIDASLFFTYFERLRALTYSNVPEISISNGVLAISTVLATGNLGRGRSYG CCEECCCCEEECHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEEECCCCCCCCCCCC GEFWGMWQVRPGWRLAPSYSYVRDTFWLPPSSPVRMYNWDLIPMDLRHQALLRSQFDIGR CCEEEEEEECCCCEECCCCHHHHHEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCC QWQVDLMARARSRERAWGLPAAFLVDARAAWRCTRNSEVSIALTNLTDRRVIEASSESAT EEEHHHHHHHHHHHHHCCCCHHHEECCHHHEEECCCCCEEEEEECCCCCEEEECCCCCCC PAIPIRRTFLLKWSQRF CCCCCEEEEEEEECCCC >Mature Secondary Structure MKWLRMAAGAAWLIGNLGAQRVGAPTDDLTKLGVDELFSIEVTSVGRKAQGLSKAPAAVF CCHHHHHCCHHHHHHCCCCHHCCCCCHHHHHCCHHHEEEEEEECCCCHHCCCCCCCCEEE VLTAEDIRRSGATSVPEALRWVPGLTVLSQDGRSWSISARGSTRLYSDKILVMIDGRSLY EEEHHHHHCCCCCCHHHHHHHCCCCEEEECCCCEEEEECCCCCEEECCEEEEEECCCHHH TPLFSGVIWDAVDVPLGDVEQIEIVRGPGAVMWGPNAVNGVINIITRRAQSTTGQQVSLA HHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEECCHHHHHHHHHHHHHHCCCCCCEEEEE TGNDLRASAEARTGKAWDRMAYRVWGKYDFRTPGYGSFGDFSFTNFVFRDPAIRNLDMGS CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC GRIGFRVDGQPDEKDQWMVQGDVYKADRQDPLAFPTIRPAVERLQGHTDYEGGFIQGRWI CEEEEEECCCCCCCCCEEEECCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEE HTASPGNESEFRWSYDHNDFDYSYVAASLQNVTADLQNRLHAGEGNEIYWGAGFQQYWDD EECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH TRSQRLVAFDPAKSLYRSGYGVLRDEWQLVPDRFLCSAGIRVDYNSYHQLEYQPSLRFLY HHCCEEEEECCHHHHHHCCCCEECCHHHCCCCHHHHHCCCEEECCCCEEEEECCCEEEEE TPNARQSAWAAVSRAIRAPNRLDRSLEYDPGYRADYDFPIRMHSTGSQAQLSEVARSAES CCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHC GYRFQAGQRWSIDASLFFTYFERLRALTYSNVPEISISNGVLAISTVLATGNLGRGRSYG CCEECCCCEEECHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEEECCCCCCCCCCCC GEFWGMWQVRPGWRLAPSYSYVRDTFWLPPSSPVRMYNWDLIPMDLRHQALLRSQFDIGR CCEEEEEEECCCCEECCCCHHHHHEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCC QWQVDLMARARSRERAWGLPAAFLVDARAAWRCTRNSEVSIALTNLTDRRVIEASSESAT EEEHHHHHHHHHHHHHCCCCHHHEECCHHHEEECCCCCEEEEEECCCCCEEEECCCCCCC PAIPIRRTFLLKWSQRF CCCCCEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406279; 2174861 [H]