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The map label for this gene is yoaA [C]

Identifier: 116620167

GI number: 116620167

Start: 1285610

End: 1287541

Strand: Direct

Name: yoaA [C]

Synonym: Acid_1040

Alternate gene names: 116620167

Gene position: 1285610-1287541 (Clockwise)

Preceding gene: 116620166

Following gene: 116620168

Centisome position: 12.9

GC content: 59.42

Gene sequence:

>1932_bases
ATGCCCACCCAGGCCCGCCCCGCCAGTTCCCGCCAGTTCTTCGGCCGCGGCGGAACCCTGTCCAAGTGGCATCCCCATTA
CGAATTTCGTGCGGGCCAGGTCGAAATGGCGGAAGCCGTGGAATCCGCCCTCGCCGATAAGCGACACCTCATCGTCGAGG
CCGGCACCGGCACCGGCAAGACGCTAGCCTATCTCGTTCCCGCGCTGCTGAGCGGCAAGCGCATCGTGGTCTCCACCGGC
ACCAAAACCCTCCAGGAGCAACTCTTCTTCAAAGACGTTCCGTTCCTGCAGCAGCACTTCACCCGTCCGCTCAACGTCTG
CTACATGAAGGGCCGCAACAACTACGCCTGCCGCCAGAAGATTTACGACGCCGAGAACAGCCCCGTCCTCACCGGACTCG
AAGAAGTCGCCGATTTCGAGATCATTCGCGAATGGGAGAAAACCACGGAGTTCGGCGACCGCTCCGAAATCAAAAGCCTG
CCCGAAGCCTCTACCGCCTGGGCCAAATTCGACGCGCGCAGCGATCTGTGTAGCGGCGCCAAGTGCGCAAACTACGAGCG
CTGCTTCATCACCTTGATGCACCAGCGCGCCATCGAGAGCGACATCATCATCGTCAATCACCACCTGTTCTTTGCCGACC
TCTCGCTCCGCGGCGGAAAAAACGAAGGCGGCATTCTGCCCGATTACCATGCCGTGGTCTTCGACGAGGCCCACGAGATC
GAAGACGTGGTCGGCCAGTATTTCGGCGTGGCCATCAGCAACTTCAAAATGCAGGACCTGCGGCGCGATCTCGGCATCGT
GAGCCGCATGAAAAAGTTCGGCACGCCGGAACTCGATCGCATCCTGCAGCGCTTCGACGAATTGATCGGTCATTTCTTCT
CGCTCTTCGGCGAGGCCGATCGGCGCGTCGCCTTCCACGGCCGCGACGCCTTCCGCGAGGACAACGAGGAAGTCTACTCC
GACCTGCTTAGCGTACTCGACTTGATCGGCTCGCACCTCAAACTACTCGCCAGCCCGCCAGAGGAGATCATCCCCCTATT
CCGCCGCGCCAACGAACTCCGCGACGGCCTGCGTTTCATCATGGAAGAGAACGACGAGCGGTTCGTCTACTGGCTGGAAA
AGCGCAATCGCGGCGTCTTCCTGCAAGCCACCCCGATCGACGTAGCCGATATCGTCGCCGAGAAACTCTTCCGCAAAGTG
GAAACCGTTGTCCTTACCTCCGCCACGCTCGCCGTCGCCGGCGGCTTCGAATTCACCGAGAAGCGGCTCGGCATGGAGAA
CCCGCGCACGCTGGTCGTGCCCGGCCATTTCGATTACCAGAAGCAGGCGCTGCTCTACATCCCGCAGCAGTTACCCGAAC
CCAAGAATCCGGCCTTCGCCAAAATGGCGGCGGAAGAAGTGGTCAAAATCCTGGAGCACAGCCGTGGACGCGCCTTCGTG
CTCTTCACGAGCTATCAGCAAATGCGCGTGGTCTATGACAAGGTCTCCTTCGAGATTGATTACCCTACACTCATGCAGGG
CACCGGACCGCGCAACGCGCTGCTTGACGAATTCCGTTCCACCCCCAACTGCGTCCTCTTCGCCACTTCATCCTTTTGGC
AGGGCGTGGATGTTCCGGGCGAGCAGTTGAGCTGCGTTATCATAGATAAACTGCCCTTTGCGGTGCCCAACGACCCGGTT
GTCAACGCGCGCATCGAAAGCATTCGCAATGCCGGTGGAAATCCGTTCTACGACTACCAAATCCCCCAGGCGGCCATTGC
CTTAAAACAGGGATTCGGGCGATTGATTCGCAGCAAGAGCGATCGAGGTGTGCTGGTGCTACTGGATAACCGGATCACCA
GCCAGCGTTACGGCCAGGTCTTTTTCGATAGCCTGCCCGATTACGGATTCACCACCAAACTGGCAGATGTGGAGAAGTTT
TTCAATGTTTGA

Upstream 100 bases:

>100_bases
CGGCGATAATCCCCGCCTCTCCGCCGAACTCCGCCGCAAACTCGACGAGATCCTGTAAGACGGGCCTACTGGCCGGTCTC
TTGTTAAAATCAAACCATCC

Downstream 100 bases:

>100_bases
AGTGACGATCGAAGAGACATTCGCCGCCGGGCACGCCCTACGCAACTATAAGGGCAAGTGCGAAAACGTGCACGGGCACA
ACTACCGCTGCCAGGTCACC

Product: helicase c2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 643; Mature: 642

Protein sequence:

>643_residues
MPTQARPASSRQFFGRGGTLSKWHPHYEFRAGQVEMAEAVESALADKRHLIVEAGTGTGKTLAYLVPALLSGKRIVVSTG
TKTLQEQLFFKDVPFLQQHFTRPLNVCYMKGRNNYACRQKIYDAENSPVLTGLEEVADFEIIREWEKTTEFGDRSEIKSL
PEASTAWAKFDARSDLCSGAKCANYERCFITLMHQRAIESDIIIVNHHLFFADLSLRGGKNEGGILPDYHAVVFDEAHEI
EDVVGQYFGVAISNFKMQDLRRDLGIVSRMKKFGTPELDRILQRFDELIGHFFSLFGEADRRVAFHGRDAFREDNEEVYS
DLLSVLDLIGSHLKLLASPPEEIIPLFRRANELRDGLRFIMEENDERFVYWLEKRNRGVFLQATPIDVADIVAEKLFRKV
ETVVLTSATLAVAGGFEFTEKRLGMENPRTLVVPGHFDYQKQALLYIPQQLPEPKNPAFAKMAAEEVVKILEHSRGRAFV
LFTSYQQMRVVYDKVSFEIDYPTLMQGTGPRNALLDEFRSTPNCVLFATSSFWQGVDVPGEQLSCVIIDKLPFAVPNDPV
VNARIESIRNAGGNPFYDYQIPQAAIALKQGFGRLIRSKSDRGVLVLLDNRITSQRYGQVFFDSLPDYGFTTKLADVEKF
FNV

Sequences:

>Translated_643_residues
MPTQARPASSRQFFGRGGTLSKWHPHYEFRAGQVEMAEAVESALADKRHLIVEAGTGTGKTLAYLVPALLSGKRIVVSTG
TKTLQEQLFFKDVPFLQQHFTRPLNVCYMKGRNNYACRQKIYDAENSPVLTGLEEVADFEIIREWEKTTEFGDRSEIKSL
PEASTAWAKFDARSDLCSGAKCANYERCFITLMHQRAIESDIIIVNHHLFFADLSLRGGKNEGGILPDYHAVVFDEAHEI
EDVVGQYFGVAISNFKMQDLRRDLGIVSRMKKFGTPELDRILQRFDELIGHFFSLFGEADRRVAFHGRDAFREDNEEVYS
DLLSVLDLIGSHLKLLASPPEEIIPLFRRANELRDGLRFIMEENDERFVYWLEKRNRGVFLQATPIDVADIVAEKLFRKV
ETVVLTSATLAVAGGFEFTEKRLGMENPRTLVVPGHFDYQKQALLYIPQQLPEPKNPAFAKMAAEEVVKILEHSRGRAFV
LFTSYQQMRVVYDKVSFEIDYPTLMQGTGPRNALLDEFRSTPNCVLFATSSFWQGVDVPGEQLSCVIIDKLPFAVPNDPV
VNARIESIRNAGGNPFYDYQIPQAAIALKQGFGRLIRSKSDRGVLVLLDNRITSQRYGQVFFDSLPDYGFTTKLADVEKF
FNV
>Mature_642_residues
PTQARPASSRQFFGRGGTLSKWHPHYEFRAGQVEMAEAVESALADKRHLIVEAGTGTGKTLAYLVPALLSGKRIVVSTGT
KTLQEQLFFKDVPFLQQHFTRPLNVCYMKGRNNYACRQKIYDAENSPVLTGLEEVADFEIIREWEKTTEFGDRSEIKSLP
EASTAWAKFDARSDLCSGAKCANYERCFITLMHQRAIESDIIIVNHHLFFADLSLRGGKNEGGILPDYHAVVFDEAHEIE
DVVGQYFGVAISNFKMQDLRRDLGIVSRMKKFGTPELDRILQRFDELIGHFFSLFGEADRRVAFHGRDAFREDNEEVYSD
LLSVLDLIGSHLKLLASPPEEIIPLFRRANELRDGLRFIMEENDERFVYWLEKRNRGVFLQATPIDVADIVAEKLFRKVE
TVVLTSATLAVAGGFEFTEKRLGMENPRTLVVPGHFDYQKQALLYIPQQLPEPKNPAFAKMAAEEVVKILEHSRGRAFVL
FTSYQQMRVVYDKVSFEIDYPTLMQGTGPRNALLDEFRSTPNCVLFATSSFWQGVDVPGEQLSCVIIDKLPFAVPNDPVV
NARIESIRNAGGNPFYDYQIPQAAIALKQGFGRLIRSKSDRGVLVLLDNRITSQRYGQVFFDSLPDYGFTTKLADVEKFF
NV

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=630, Percent_Identity=37.1428571428571, Blast_Score=424, Evalue=1e-119,
Organism=Escherichia coli, GI1787018, Length=678, Percent_Identity=24.3362831858407, Blast_Score=145, Evalue=6e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR001650
- InterPro:   IPR006935 [H]

Pfam domain/function: PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 72926; Mature: 72795

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00690 DEAH_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTQARPASSRQFFGRGGTLSKWHPHYEFRAGQVEMAEAVESALADKRHLIVEAGTGTGK
CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCH
TLAYLVPALLSGKRIVVSTGTKTLQEQLFFKDVPFLQQHFTRPLNVCYMKGRNNYACRQK
HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCHHHHHH
IYDAENSPVLTGLEEVADFEIIREWEKTTEFGDRSEIKSLPEASTAWAKFDARSDLCSGA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHCCCHHHHCCCC
KCANYERCFITLMHQRAIESDIIIVNHHLFFADLSLRGGKNEGGILPDYHAVVFDEAHEI
CCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCHHEEECCHHHH
EDVVGQYFGVAISNFKMQDLRRDLGIVSRMKKFGTPELDRILQRFDELIGHFFSLFGEAD
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
RRVAFHGRDAFREDNEEVYSDLLSVLDLIGSHLKLLASPPEEIIPLFRRANELRDGLRFI
CEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
MEENDERFVYWLEKRNRGVFLQATPIDVADIVAEKLFRKVETVVLTSATLAVAGGFEFTE
HCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHH
KRLGMENPRTLVVPGHFDYQKQALLYIPQQLPEPKNPAFAKMAAEEVVKILEHSRGRAFV
HHCCCCCCCEEEECCCCCCCCHHEEECHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
LFTSYQQMRVVYDKVSFEIDYPTLMQGTGPRNALLDEFRSTPNCVLFATSSFWQGVDVPG
EEECHHHHHHHHHHHEEEECCCHHCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
EQLSCVIIDKLPFAVPNDPVVNARIESIRNAGGNPFYDYQIPQAAIALKQGFGRLIRSKS
CCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHCCC
DRGVLVLLDNRITSQRYGQVFFDSLPDYGFTTKLADVEKFFNV
CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
PTQARPASSRQFFGRGGTLSKWHPHYEFRAGQVEMAEAVESALADKRHLIVEAGTGTGK
CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCH
TLAYLVPALLSGKRIVVSTGTKTLQEQLFFKDVPFLQQHFTRPLNVCYMKGRNNYACRQK
HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCCHHHHHH
IYDAENSPVLTGLEEVADFEIIREWEKTTEFGDRSEIKSLPEASTAWAKFDARSDLCSGA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHCCCHHHHCCCC
KCANYERCFITLMHQRAIESDIIIVNHHLFFADLSLRGGKNEGGILPDYHAVVFDEAHEI
CCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCHHEEECCHHHH
EDVVGQYFGVAISNFKMQDLRRDLGIVSRMKKFGTPELDRILQRFDELIGHFFSLFGEAD
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
RRVAFHGRDAFREDNEEVYSDLLSVLDLIGSHLKLLASPPEEIIPLFRRANELRDGLRFI
CEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
MEENDERFVYWLEKRNRGVFLQATPIDVADIVAEKLFRKVETVVLTSATLAVAGGFEFTE
HCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHH
KRLGMENPRTLVVPGHFDYQKQALLYIPQQLPEPKNPAFAKMAAEEVVKILEHSRGRAFV
HHCCCCCCCEEEECCCCCCCCHHEEECHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
LFTSYQQMRVVYDKVSFEIDYPTLMQGTGPRNALLDEFRSTPNCVLFATSSFWQGVDVPG
EEECHHHHHHHHHHHEEEECCCHHCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
EQLSCVIIDKLPFAVPNDPVVNARIESIRNAGGNPFYDYQIPQAAIALKQGFGRLIRSKS
CCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHCCC
DRGVLVLLDNRITSQRYGQVFFDSLPDYGFTTKLADVEKFFNV
CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]