| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is rbpE [H]
Identifier: 116620134
GI number: 116620134
Start: 1253630
End: 1254028
Strand: Direct
Name: rbpE [H]
Synonym: Acid_1007
Alternate gene names: 116620134
Gene position: 1253630-1254028 (Clockwise)
Preceding gene: 116620131
Following gene: 116620137
Centisome position: 12.58
GC content: 64.91
Gene sequence:
>399_bases GTGAAGAACATATTCGTAGGCAACCTGGATTTCAATGCCTCCGAAGAGGGTGTACGCAGCCTCTTTGAACGGTACGGCCA GGTTAATAGCGCCCGAATCATGACGGATCGCGAAACAGGCCGCTCCCGCGGTTTCGCGTTCGTTGAAATGGAAAACGAAG GCGAGGCGGATCAGGCAATTTCCGCCCTCAACGGTTACACACTGGACGGTCGTGCACTGAATGTGAACGAAGCCCGTCCC AAGCCCGACCGTGGCTTCGGCGGCGGTGGCGGAGGTGGACGCGGCTTTGGCGGCGGTGGCGGTGGCGGACGCCCGGGCGG TGGTGGAGGCGGCGGCGGCCGTCGGCCTGGAGGCGGTGGTGGCGGCGGCGGCGGCAATCGGCGCGAACCGCGCTGGTAA
Upstream 100 bases:
>100_bases CGTTTGATAAGCTTTCGCGAATCCGGCCGAGTGTATCTTTGAGCTTGCCGCTTGTGTGCCTCCCCGATGAGCCCCGCTTT CAAATTGACAGGAGACTAGA
Downstream 100 bases:
>100_bases CGGTTTCGAGAAGCAGTAAAAACGAGGGGCGTCTAACCTAGACGCCCCTCGTTCCGTTTTCCAGGAAGGCGCGGAGCCGG TGGCTGCGGCTCGGATGGCG
Product: RNP-1 like RNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 132; Mature: 132
Protein sequence:
>132_residues MKNIFVGNLDFNASEEGVRSLFERYGQVNSARIMTDRETGRSRGFAFVEMENEGEADQAISALNGYTLDGRALNVNEARP KPDRGFGGGGGGGRGFGGGGGGGRPGGGGGGGGRRPGGGGGGGGGNRREPRW
Sequences:
>Translated_132_residues MKNIFVGNLDFNASEEGVRSLFERYGQVNSARIMTDRETGRSRGFAFVEMENEGEADQAISALNGYTLDGRALNVNEARP KPDRGFGGGGGGGRGFGGGGGGGRPGGGGGGGGRRPGGGGGGGGGNRREPRW >Mature_132_residues MKNIFVGNLDFNASEEGVRSLFERYGQVNSARIMTDRETGRSRGFAFVEMENEGEADQAISALNGYTLDGRALNVNEARP KPDRGFGGGGGGGRGFGGGGGGGRPGGGGGGGGRRPGGGGGGGGGNRREPRW
Specific function: Unknown
COG id: COG0724
COG function: function code R; RNA-binding proteins (RRM domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RRM (RNA recognition motif) domain [H]
Homologues:
Organism=Homo sapiens, GI4502847, Length=91, Percent_Identity=41.7582417582418, Blast_Score=79, Evalue=1e-15, Organism=Homo sapiens, GI56699409, Length=76, Percent_Identity=39.4736842105263, Blast_Score=70, Evalue=3e-13, Organism=Homo sapiens, GI14149675, Length=78, Percent_Identity=39.7435897435897, Blast_Score=70, Evalue=3e-13, Organism=Homo sapiens, GI4557493, Length=78, Percent_Identity=39.7435897435897, Blast_Score=70, Evalue=5e-13, Organism=Homo sapiens, GI47271443, Length=79, Percent_Identity=43.0379746835443, Blast_Score=70, Evalue=5e-13, Organism=Homo sapiens, GI153252068, Length=76, Percent_Identity=39.4736842105263, Blast_Score=69, Evalue=8e-13, Organism=Homo sapiens, GI242117971, Length=76, Percent_Identity=38.1578947368421, Blast_Score=69, Evalue=9e-13, Organism=Homo sapiens, GI21361809, Length=76, Percent_Identity=38.1578947368421, Blast_Score=69, Evalue=9e-13, Organism=Homo sapiens, GI4757926, Length=111, Percent_Identity=32.4324324324324, Blast_Score=68, Evalue=2e-12, Organism=Homo sapiens, GI35493811, Length=111, Percent_Identity=32.4324324324324, Blast_Score=68, Evalue=2e-12, Organism=Homo sapiens, GI223890219, Length=77, Percent_Identity=36.3636363636364, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI5803137, Length=75, Percent_Identity=41.3333333333333, Blast_Score=67, Evalue=4e-12, Organism=Homo sapiens, GI221139802, Length=76, Percent_Identity=40.7894736842105, Blast_Score=65, Evalue=1e-11, Organism=Homo sapiens, GI58761498, Length=81, Percent_Identity=38.2716049382716, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI58761496, Length=81, Percent_Identity=38.2716049382716, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI34577105, Length=76, Percent_Identity=40.7894736842105, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI34577107, Length=76, Percent_Identity=40.7894736842105, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI116734696, Length=72, Percent_Identity=37.5, Blast_Score=63, Evalue=7e-11, Organism=Homo sapiens, GI116734694, Length=72, Percent_Identity=37.5, Blast_Score=63, Evalue=8e-11, Organism=Homo sapiens, GI116734698, Length=72, Percent_Identity=37.5, Blast_Score=63, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17553656, Length=104, Percent_Identity=36.5384615384615, Blast_Score=76, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17508585, Length=76, Percent_Identity=47.3684210526316, Blast_Score=74, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17508567, Length=75, Percent_Identity=48, Blast_Score=70, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17508587, Length=76, Percent_Identity=46.0526315789474, Blast_Score=69, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71993217, Length=117, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71993209, Length=82, Percent_Identity=41.4634146341463, Blast_Score=69, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71993203, Length=82, Percent_Identity=41.4634146341463, Blast_Score=69, Evalue=9e-13, Organism=Saccharomyces cerevisiae, GI6321599, Length=81, Percent_Identity=37.037037037037, Blast_Score=67, Evalue=6e-13, Organism=Drosophila melanogaster, GI19920866, Length=72, Percent_Identity=38.8888888888889, Blast_Score=69, Evalue=8e-13, Organism=Drosophila melanogaster, GI24582412, Length=72, Percent_Identity=38.8888888888889, Blast_Score=69, Evalue=8e-13, Organism=Drosophila melanogaster, GI24582417, Length=72, Percent_Identity=38.8888888888889, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI45550943, Length=72, Percent_Identity=38.8888888888889, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI24582419, Length=72, Percent_Identity=38.8888888888889, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI24582423, Length=72, Percent_Identity=38.8888888888889, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI24582421, Length=72, Percent_Identity=38.8888888888889, Blast_Score=69, Evalue=9e-13, Organism=Drosophila melanogaster, GI17137710, Length=78, Percent_Identity=39.7435897435897, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI21358099, Length=79, Percent_Identity=43.0379746835443, Blast_Score=67, Evalue=4e-12, Organism=Drosophila melanogaster, GI221330652, Length=78, Percent_Identity=38.4615384615385, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI62471589, Length=78, Percent_Identity=38.4615384615385, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI19549692, Length=78, Percent_Identity=38.4615384615385, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI19549690, Length=78, Percent_Identity=38.4615384615385, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI221330653, Length=78, Percent_Identity=38.4615384615385, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI19549688, Length=78, Percent_Identity=38.4615384615385, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI19549694, Length=78, Percent_Identity=38.4615384615385, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24650831, Length=81, Percent_Identity=34.5679012345679, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI24650833, Length=81, Percent_Identity=34.5679012345679, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI24650836, Length=81, Percent_Identity=34.5679012345679, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI17738267, Length=81, Percent_Identity=34.5679012345679, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI24650840, Length=81, Percent_Identity=34.5679012345679, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI24650838, Length=81, Percent_Identity=34.5679012345679, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI21356157, Length=134, Percent_Identity=35.0746268656716, Blast_Score=63, Evalue=6e-11, Organism=Drosophila melanogaster, GI281361714, Length=83, Percent_Identity=34.9397590361446, Blast_Score=62, Evalue=1e-10, Organism=Drosophila melanogaster, GI17136624, Length=83, Percent_Identity=34.9397590361446, Blast_Score=62, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012677 - InterPro: IPR000504 - InterPro: IPR015465 [H]
Pfam domain/function: PF00076 RRM_1 [H]
EC number: NA
Molecular weight: Translated: 13393; Mature: 13393
Theoretical pI: Translated: 10.40; Mature: 10.40
Prosite motif: PS50102 RRM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNIFVGNLDFNASEEGVRSLFERYGQVNSARIMTDRETGRSRGFAFVEMENEGEADQAI CCCEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHHH SALNGYTLDGRALNVNEARPKPDRGFGGGGGGGRGFGGGGGGGRPGGGGGGGGRRPGGGG HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GGGGGNRREPRW CCCCCCCCCCCC >Mature Secondary Structure MKNIFVGNLDFNASEEGVRSLFERYGQVNSARIMTDRETGRSRGFAFVEMENEGEADQAI CCCEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCCCCHHHHH SALNGYTLDGRALNVNEARPKPDRGFGGGGGGGRGFGGGGGGGRPGGGGGGGGRRPGGGG HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GGGGGNRREPRW CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]