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The map label for this gene is ctpA [H]

Identifier: 116619979

GI number: 116619979

Start: 1054845

End: 1056128

Strand: Direct

Name: ctpA [H]

Synonym: Acid_0851

Alternate gene names: 116619979

Gene position: 1054845-1056128 (Clockwise)

Preceding gene: 116619977

Following gene: 116619980

Centisome position: 10.58

GC content: 64.56

Gene sequence:

>1284_bases
ATGTCGCATCGTACTTGGGCGATCGTGCTGGCGATCGCCGGCGCTGCCGCCGCCGCGGCACAGAATTCCACCTCCGCGGC
CAACGTCGAGGCCTTCGAAAAGGTCTGGAGTACGATTCGCGACAAGCACTGGGATCCCAAACTCGGCGGCGTCGATTGGC
AGGCCACACACGATGAGCTTCGCCCTAAAGTGGAAGCCGCCAAGAGCGACGCCGCGGTCCGCGAGATTCTCAACGAGATG
GTCGGCCGCCTGAAGCAGACGCACTTCGGCATCTTCCCCGGCGACGTCTATCACGATCTCGACGCGTCCGGCGAGCACGA
TTCCGGCGACGCCGATATCGGCATCGACCTGCGCGTCATCGACGGGCGCGCGCTCGTGACCGAAGTCTATCCCGCATCGC
CGGCCGGCGCCAAAGGTGTCAAGCCAGGATGGGCGATCCTGCGTATCGGGGCCCATGACGTTGCCCCCGTGGTGTCGCGA
ATCCGCGAACAGTTCGCCGATTCTTCCCTGCTCGATCTTCGCCTGAACCGCGCCGTCGTCACGCGCCTGCAAGGCAGTGA
AGGCTCCGCCGTGATGGTGGAATTCCTGGATGGCTCCAATCGCAAGATTGCGGTCGATCTGGTGCGCGCCGCTCCGCGCG
GCAAGTTGGCGCGCCTGGGGAACCTCCCTCCTACGCCTACATGGAGCGAATGGCGCCGCCTGCCGCAGGACATCGGATAT
GTGCGCTTCAATATTTTCCTCGACCCGGACGGACTCGCAAAAACGATGGAGGAGGCCATGAAAGGATGCCGCGATTGCCG
CGGCTTTGTGCTCGACTTGCGCGGCAATCCTGGCGGCATCGGCGGCCTCGCGATGGGCGTGGCGGGCTGGTTCACGGACA
AATCGGGCCAGCAGTTGGGCACCGAGTACCTGCGCGGGATGACGCTCAAGTTCGTGATCTTTCCGCGCCCGCGGCCCTTT
CTCGGACCGCTCGCCGTGCTGGTGGACGGCTGTTCCGCTTCGACCTCGGAGATTCTGGCCGGAGGGCTGAAAGATATCGG
GCGCGCGCGCCTCTTCGGCACCCGGACGGCGGCAGCCGCGCTGCCTTCCGTGATCGACAGGCTGCCCAACGGCGATGGAT
TCCAATACGCCATCGCCAACTACATCTCGCAAGGCGGCAAACCGCTCGAAGGCCTCGGCGCTATTCCCGACCAGGAAGTG
CGCCTCACGCGCGAGCAGTTACTGCAGGGCAAGGACCCGGCTCTCGATGCCGCCGTTACGTGGATTCAGGAACAGAAGAA
ATGA

Upstream 100 bases:

>100_bases
TTCCACGGACACAAAGAACGCGTCCATATCGACGTGGAAGTAAGTGCGCACTTCTCCCATGTTAACCGAGCCGCGGCCGC
AACTACGTTATAGTTGGGGA

Downstream 100 bases:

>100_bases
GGTACTTCCAAATGACTCGCAGTTTGAAACTTGGCGCCGCGCTCGCGTTCGCCGCCGCCATCGTTTGCGCCGCCGATCTG
CCCAAGGGCGAGGCGCTGCT

Product: peptidase S41

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MSHRTWAIVLAIAGAAAAAAQNSTSAANVEAFEKVWSTIRDKHWDPKLGGVDWQATHDELRPKVEAAKSDAAVREILNEM
VGRLKQTHFGIFPGDVYHDLDASGEHDSGDADIGIDLRVIDGRALVTEVYPASPAGAKGVKPGWAILRIGAHDVAPVVSR
IREQFADSSLLDLRLNRAVVTRLQGSEGSAVMVEFLDGSNRKIAVDLVRAAPRGKLARLGNLPPTPTWSEWRRLPQDIGY
VRFNIFLDPDGLAKTMEEAMKGCRDCRGFVLDLRGNPGGIGGLAMGVAGWFTDKSGQQLGTEYLRGMTLKFVIFPRPRPF
LGPLAVLVDGCSASTSEILAGGLKDIGRARLFGTRTAAAALPSVIDRLPNGDGFQYAIANYISQGGKPLEGLGAIPDQEV
RLTREQLLQGKDPALDAAVTWIQEQKK

Sequences:

>Translated_427_residues
MSHRTWAIVLAIAGAAAAAAQNSTSAANVEAFEKVWSTIRDKHWDPKLGGVDWQATHDELRPKVEAAKSDAAVREILNEM
VGRLKQTHFGIFPGDVYHDLDASGEHDSGDADIGIDLRVIDGRALVTEVYPASPAGAKGVKPGWAILRIGAHDVAPVVSR
IREQFADSSLLDLRLNRAVVTRLQGSEGSAVMVEFLDGSNRKIAVDLVRAAPRGKLARLGNLPPTPTWSEWRRLPQDIGY
VRFNIFLDPDGLAKTMEEAMKGCRDCRGFVLDLRGNPGGIGGLAMGVAGWFTDKSGQQLGTEYLRGMTLKFVIFPRPRPF
LGPLAVLVDGCSASTSEILAGGLKDIGRARLFGTRTAAAALPSVIDRLPNGDGFQYAIANYISQGGKPLEGLGAIPDQEV
RLTREQLLQGKDPALDAAVTWIQEQKK
>Mature_426_residues
SHRTWAIVLAIAGAAAAAAQNSTSAANVEAFEKVWSTIRDKHWDPKLGGVDWQATHDELRPKVEAAKSDAAVREILNEMV
GRLKQTHFGIFPGDVYHDLDASGEHDSGDADIGIDLRVIDGRALVTEVYPASPAGAKGVKPGWAILRIGAHDVAPVVSRI
REQFADSSLLDLRLNRAVVTRLQGSEGSAVMVEFLDGSNRKIAVDLVRAAPRGKLARLGNLPPTPTWSEWRRLPQDIGYV
RFNIFLDPDGLAKTMEEAMKGCRDCRGFVLDLRGNPGGIGGLAMGVAGWFTDKSGQQLGTEYLRGMTLKFVIFPRPRPFL
GPLAVLVDGCSASTSEILAGGLKDIGRARLFGTRTAAAALPSVIDRLPNGDGFQYAIANYISQGGKPLEGLGAIPDQEVR
LTREQLLQGKDPALDAAVTWIQEQKK

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 46029; Mature: 45898

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS00606 B_KETOACYL_SYNTHASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHRTWAIVLAIAGAAAAAAQNSTSAANVEAFEKVWSTIRDKHWDPKLGGVDWQATHDEL
CCCCCEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
RPKVEAAKSDAAVREILNEMVGRLKQTHFGIFPGDVYHDLDASGEHDSGDADIGIDLRVI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCEEEEEEEE
DGRALVTEVYPASPAGAKGVKPGWAILRIGAHDVAPVVSRIREQFADSSLLDLRLNRAVV
CCCEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
TRLQGSEGSAVMVEFLDGSNRKIAVDLVRAAPRGKLARLGNLPPTPTWSEWRRLPQDIGY
HHCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHCCCCCCCCCHHHHHHCHHHCCE
VRFNIFLDPDGLAKTMEEAMKGCRDCRGFVLDLRGNPGGIGGLAMGVAGWFTDKSGQQLG
EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHH
TEYLRGMTLKFVIFPRPRPFLGPLAVLVDGCSASTSEILAGGLKDIGRARLFGTRTAAAA
HHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
LPSVIDRLPNGDGFQYAIANYISQGGKPLEGLGAIPDQEVRLTREQLLQGKDPALDAAVT
HHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
WIQEQKK
HHHHHCC
>Mature Secondary Structure 
SHRTWAIVLAIAGAAAAAAQNSTSAANVEAFEKVWSTIRDKHWDPKLGGVDWQATHDEL
CCCCEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
RPKVEAAKSDAAVREILNEMVGRLKQTHFGIFPGDVYHDLDASGEHDSGDADIGIDLRVI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCEEEEEEEE
DGRALVTEVYPASPAGAKGVKPGWAILRIGAHDVAPVVSRIREQFADSSLLDLRLNRAVV
CCCEEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
TRLQGSEGSAVMVEFLDGSNRKIAVDLVRAAPRGKLARLGNLPPTPTWSEWRRLPQDIGY
HHCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHCCCCCCCCCHHHHHHCHHHCCE
VRFNIFLDPDGLAKTMEEAMKGCRDCRGFVLDLRGNPGGIGGLAMGVAGWFTDKSGQQLG
EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHH
TEYLRGMTLKFVIFPRPRPFLGPLAVLVDGCSASTSEILAGGLKDIGRARLFGTRTAAAA
HHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
LPSVIDRLPNGDGFQYAIANYISQGGKPLEGLGAIPDQEVRLTREQLLQGKDPALDAAVT
HHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
WIQEQKK
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1421151 [H]