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The map label for this gene is yagA [H]

Identifier: 116619847

GI number: 116619847

Start: 898893

End: 900080

Strand: Direct

Name: yagA [H]

Synonym: Acid_0719

Alternate gene names: 116619847

Gene position: 898893-900080 (Clockwise)

Preceding gene: 116619846

Following gene: 116619849

Centisome position: 9.02

GC content: 58.75

Gene sequence:

>1188_bases
ATGCCCTGGCAGGAGATCCGAGTGGAAGAACAACGGTTATTGATGATTCGGGACCATGAAGAGGGGATGTCTATCTCCGA
GTTGGCGGAGGTCTATGGCGTCTCCCGCAAGACGGTCTACAAGTGGCTGGAGCGCCACGACGAGCAGGGTTTTCTGGGGC
TACAAGCACAGAGCCGGCGCCCGCATCGCTCGCCCAACCAGGTGACGCCGGAGGTGGAAGGTGCGATTATCGCAGCACGC
CACAAGTGGGGCTGGGGTCCTGGGAAACTGCGCGTCAAACTATTCCAACAGGACAGTCGCGTGCCGTGGCCAGCGGTGAG
CACCATCGCCGCCGTGCTGAAGGCCAACGGGCTGGTGGTCAGTCGTCGCAACCGGCCTCGTGTTCCCATTCAACGTCCTC
CGTATCTCGCTGCCGATGGGCCCAACGCAGTGTGGAATATCGACTACAAAGGCTGGTTTCGCTGCGGTGACGGCACCCGT
GTGGATCCGCTAACGATCAGCGATGGTTTTAGTCGGTATCTGCTCCGTTGCCAGCACGTGGAGCAGACCGGATATGAACT
CACGCGGGCGGTATTCGTTGCGACATTTCAGGAGTTTGGCTTGCCTGGAGCCATCCACTCCGATAACGGAACGCCGTTTG
CCTCGGTGGCTCCGGGTGGGCTGAGCAGGCTGTCAATTTGGTTCGTAAAGTTGGGAATCGTTGTGGAGCGCAGCCGGCCG
GCATGTCCGCAGGACAATGGACGGCACGAGCGAATGCATCGGACGTTGAAGGCCGCGACGGCCAAACCTCCGCAGGCGAC
GGTGCGACTGCAGCAGCAGGCATTTCACGCTTTCCAACGGGAGTACAACGAGGAGAGACCGCACGAAGCTTTGGATAACA
AGACCCCGCACTCCTGTTACCAGGCAAGTGCGCGCTGTTATCCGCGGCGTGTGCCGGAATTGGAATACGGAGACGACATG
GAAACGCGCGTCATCTCGCAGCAGGGGAGTTTGAAATGGAAAGGAGTGAGGACCTTCATCAGCGAAGTGTTCGCTTACGA
GACCTTGGGCATTAAAGTGATCGATGAGCGCTGGGTGGAGCTCTACTTCGGTCCCATTCGATTGGGTTGGCTCGACGGCT
ACCGACAAACTTTCAGCCGCCGAAAGCCGAAAGCTCTTATCGCTGAAGAGATCTCCGTAATCGTCTAA

Upstream 100 bases:

>100_bases
TAATGGTACGTTCCGAAGACATAGGTAACAAAACATTCTGAGGACATAGGTAACAGTGTGGGAAGAGCTCGGCTGACCGG
GGTGAGCCAGCATAGAAGGC

Downstream 100 bases:

>100_bases
GCCGAGCCGAAAACGCTCAGGGGTCGCCAGCCGCGACCCCTGACTTTCCCTCTACTCCCGCCAGCGAAAAACAAACACAA
AACCTTCTGAGATAAAAAGC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MPWQEIRVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERHDEQGFLGLQAQSRRPHRSPNQVTPEVEGAIIAAR
HKWGWGPGKLRVKLFQQDSRVPWPAVSTIAAVLKANGLVVSRRNRPRVPIQRPPYLAADGPNAVWNIDYKGWFRCGDGTR
VDPLTISDGFSRYLLRCQHVEQTGYELTRAVFVATFQEFGLPGAIHSDNGTPFASVAPGGLSRLSIWFVKLGIVVERSRP
ACPQDNGRHERMHRTLKAATAKPPQATVRLQQQAFHAFQREYNEERPHEALDNKTPHSCYQASARCYPRRVPELEYGDDM
ETRVISQQGSLKWKGVRTFISEVFAYETLGIKVIDERWVELYFGPIRLGWLDGYRQTFSRRKPKALIAEEISVIV

Sequences:

>Translated_395_residues
MPWQEIRVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERHDEQGFLGLQAQSRRPHRSPNQVTPEVEGAIIAAR
HKWGWGPGKLRVKLFQQDSRVPWPAVSTIAAVLKANGLVVSRRNRPRVPIQRPPYLAADGPNAVWNIDYKGWFRCGDGTR
VDPLTISDGFSRYLLRCQHVEQTGYELTRAVFVATFQEFGLPGAIHSDNGTPFASVAPGGLSRLSIWFVKLGIVVERSRP
ACPQDNGRHERMHRTLKAATAKPPQATVRLQQQAFHAFQREYNEERPHEALDNKTPHSCYQASARCYPRRVPELEYGDDM
ETRVISQQGSLKWKGVRTFISEVFAYETLGIKVIDERWVELYFGPIRLGWLDGYRQTFSRRKPKALIAEEISVIV
>Mature_394_residues
PWQEIRVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERHDEQGFLGLQAQSRRPHRSPNQVTPEVEGAIIAARH
KWGWGPGKLRVKLFQQDSRVPWPAVSTIAAVLKANGLVVSRRNRPRVPIQRPPYLAADGPNAVWNIDYKGWFRCGDGTRV
DPLTISDGFSRYLLRCQHVEQTGYELTRAVFVATFQEFGLPGAIHSDNGTPFASVAPGGLSRLSIWFVKLGIVVERSRPA
CPQDNGRHERMHRTLKAATAKPPQATVRLQQQAFHAFQREYNEERPHEALDNKTPHSCYQASARCYPRRVPELEYGDDME
TRVISQQGSLKWKGVRTFISEVFAYETLGIKVIDERWVELYFGPIRLGWLDGYRQTFSRRKPKALIAEEISVIV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=388, Percent_Identity=32.9896907216495, Blast_Score=183, Evalue=2e-47,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 45255; Mature: 45124

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWQEIRVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERHDEQGFLGLQAQSRR
CCHHHHEECCCEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCC
PHRSPNQVTPEVEGAIIAARHKWGWGPGKLRVKLFQQDSRVPWPAVSTIAAVLKANGLVV
CCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEE
SRRNRPRVPIQRPPYLAADGPNAVWNIDYKGWFRCGDGTRVDPLTISDGFSRYLLRCQHV
ECCCCCCCCCCCCCEEECCCCCCEEEECCCCEEEECCCCCCCEEEECCHHHHHHHHHHHH
EQTGYELTRAVFVATFQEFGLPGAIHSDNGTPFASVAPGGLSRLSIWFVKLGIVVERSRP
HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCHHHHHHHEEEEEEEEECCCC
ACPQDNGRHERMHRTLKAATAKPPQATVRLQQQAFHAFQREYNEERPHEALDNKTPHSCY
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHH
QASARCYPRRVPELEYGDDMETRVISQQGSLKWKGVRTFISEVFAYETLGIKVIDERWVE
HHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCEEEECCCEEE
LYFGPIRLGWLDGYRQTFSRRKPKALIAEEISVIV
EEECCEEEEHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
PWQEIRVEEQRLLMIRDHEEGMSISELAEVYGVSRKTVYKWLERHDEQGFLGLQAQSRR
CHHHHEECCCEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCC
PHRSPNQVTPEVEGAIIAARHKWGWGPGKLRVKLFQQDSRVPWPAVSTIAAVLKANGLVV
CCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEE
SRRNRPRVPIQRPPYLAADGPNAVWNIDYKGWFRCGDGTRVDPLTISDGFSRYLLRCQHV
ECCCCCCCCCCCCCEEECCCCCCEEEECCCCEEEECCCCCCCEEEECCHHHHHHHHHHHH
EQTGYELTRAVFVATFQEFGLPGAIHSDNGTPFASVAPGGLSRLSIWFVKLGIVVERSRP
HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEECCCCHHHHHHHEEEEEEEEECCCC
ACPQDNGRHERMHRTLKAATAKPPQATVRLQQQAFHAFQREYNEERPHEALDNKTPHSCY
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHH
QASARCYPRRVPELEYGDDMETRVISQQGSLKWKGVRTFISEVFAYETLGIKVIDERWVE
HHHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCEEEECCCEEE
LYFGPIRLGWLDGYRQTFSRRKPKALIAEEISVIV
EEECCEEEEHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]