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The map label for this gene is agaB [H]

Identifier: 116619842

GI number: 116619842

Start: 886584

End: 887972

Strand: Direct

Name: agaB [H]

Synonym: Acid_0712

Alternate gene names: 116619842

Gene position: 886584-887972 (Clockwise)

Preceding gene: 116619837

Following gene: 116619844

Centisome position: 8.9

GC content: 62.99

Gene sequence:

>1389_bases
ATGAATCGCCGTCAGTTTACGCTCTCCGTGCTGGCCGCGCACGCAGCCCGGGGGCTTCGCGCGCAGGACCTGCCGATGGT
CAAATCGCGACGCAAGCCCACCGACGAATGGAAGGAGTATCCGACCCGCACGTTGGACCGCGTCGCCGAGTTTCAGCCGG
GAGCGCGCACAATTGCGCTCGACCAATACGGCGGCCGCGCCGACCGCAAGGACAAGGCCACCGGTTTCTTTTACGCGAAG
AAACTCGGCAAGCGCTGGTTCCTGATCGACCCAGATGGCCACCCTTACTTGCAAGCCGGGGTCTGCTCGCTTGCCAGGGG
CAGCTCCTCCGTCAACCAGGCTGCGCTGAAAGAGCGCTTCGGCACGCCGGAGCGCTGGGCCGCCGAAACCAGCGACTTGC
TTCGCGAGAATGGGTTCACCGCGTCCGGCGGGTGGAGCGATGTCGATTTGCTGCGCGGCGCCCCGCACCCAATCGCGTAC
TGCGTGATGAGTAACTTCATGGGCGATTTCGGCCGCGCCAAATCGATGGTCCATCAGCAGCCCGGGCACTTGGGTTATCC
GCAGGATTGCATTCCCGTTTTTCATCCCGAGTTTGCCGCTGCCTGCGATCGTACCGCTCGTCCCCTGGCGGCGCACAAGG
ACGATCCCTGGCTTTTCGGCTATTTCTCCGACAACGAACTTCCCGCGCCCGCGGACCTGCTGGACCGGCACCTCAAGCTC
GACGCCGCGGATCCGAACCTCGCGCCCGGATTCGAGGCCGCACGCCAGTGGCTCCGTGAACGCAAAGGCGAGAGCGTCGA
AATCAGCGATGCCGATCGCGCGGCTTTCCGCGGCTATGTCTTCGACCGCTACTTCGCAACGACCACCACCGCCATTCGCA
GATACGATCCGAACCACTTGTGCATTGGTTCGCGTATGCACGGGCCCTTCCTGAAAAGTCAGGAGATCATGGCCGCGGCC
GGCCGGCACCTCGACGTGCTTTCGGTCAACGTTTACAACTACTGGACGCCGCCGGAGGACCTGATGGCCATGTGGGAGCG
CGAATCCGGCAAGCCATTCCTCGTGACGGAGTGGTATGTGAAGGCCGACGACGCCGGGTATAAGAACACGACCGGCGCGG
GCTGGATTGTGCCCACGCAAAAGGATCGCGCCGCCTTCTACCAGAACTTCGTGCTCGCGCTGCTCGAATCGCGGACCTGC
GTGGGCTGGCACTGGTTCAAATACATGGATAACGACCCCGACGATCCGCGCACCGACCCCTCGAATCGCGATTCCAACAA
AGGCATGGTGACGATTCGCTACCAGCCCTATCGCGACCTGGTGGCAGGCATGAAGGCGATCAATCGCGAAATCTATCCGC
TCGCGGACCACTTCGACGTGAGGCCGTGA

Upstream 100 bases:

>100_bases
GCCTCGCCCGGTCGCGAGAGTTCGTCCTCTAACTGCGCGATCGAAGCCATGCTGCCAGTGTATCCGCCTACCGGTTGGAA
TTGATAACCTGAGGTCGTTT

Downstream 100 bases:

>100_bases
CGCTTACTGGCCGGCTTCGAGGGCGCGGATCGCTTCCAGGTTGAGATACTCCACCATTCCGGCGGGGCCTGCCTCGGCTC
CCGAGCGGAAGCTTGACATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MNRRQFTLSVLAAHAARGLRAQDLPMVKSRRKPTDEWKEYPTRTLDRVAEFQPGARTIALDQYGGRADRKDKATGFFYAK
KLGKRWFLIDPDGHPYLQAGVCSLARGSSSVNQAALKERFGTPERWAAETSDLLRENGFTASGGWSDVDLLRGAPHPIAY
CVMSNFMGDFGRAKSMVHQQPGHLGYPQDCIPVFHPEFAAACDRTARPLAAHKDDPWLFGYFSDNELPAPADLLDRHLKL
DAADPNLAPGFEAARQWLRERKGESVEISDADRAAFRGYVFDRYFATTTTAIRRYDPNHLCIGSRMHGPFLKSQEIMAAA
GRHLDVLSVNVYNYWTPPEDLMAMWERESGKPFLVTEWYVKADDAGYKNTTGAGWIVPTQKDRAAFYQNFVLALLESRTC
VGWHWFKYMDNDPDDPRTDPSNRDSNKGMVTIRYQPYRDLVAGMKAINREIYPLADHFDVRP

Sequences:

>Translated_462_residues
MNRRQFTLSVLAAHAARGLRAQDLPMVKSRRKPTDEWKEYPTRTLDRVAEFQPGARTIALDQYGGRADRKDKATGFFYAK
KLGKRWFLIDPDGHPYLQAGVCSLARGSSSVNQAALKERFGTPERWAAETSDLLRENGFTASGGWSDVDLLRGAPHPIAY
CVMSNFMGDFGRAKSMVHQQPGHLGYPQDCIPVFHPEFAAACDRTARPLAAHKDDPWLFGYFSDNELPAPADLLDRHLKL
DAADPNLAPGFEAARQWLRERKGESVEISDADRAAFRGYVFDRYFATTTTAIRRYDPNHLCIGSRMHGPFLKSQEIMAAA
GRHLDVLSVNVYNYWTPPEDLMAMWERESGKPFLVTEWYVKADDAGYKNTTGAGWIVPTQKDRAAFYQNFVLALLESRTC
VGWHWFKYMDNDPDDPRTDPSNRDSNKGMVTIRYQPYRDLVAGMKAINREIYPLADHFDVRP
>Mature_462_residues
MNRRQFTLSVLAAHAARGLRAQDLPMVKSRRKPTDEWKEYPTRTLDRVAEFQPGARTIALDQYGGRADRKDKATGFFYAK
KLGKRWFLIDPDGHPYLQAGVCSLARGSSSVNQAALKERFGTPERWAAETSDLLRENGFTASGGWSDVDLLRGAPHPIAY
CVMSNFMGDFGRAKSMVHQQPGHLGYPQDCIPVFHPEFAAACDRTARPLAAHKDDPWLFGYFSDNELPAPADLLDRHLKL
DAADPNLAPGFEAARQWLRERKGESVEISDADRAAFRGYVFDRYFATTTTAIRRYDPNHLCIGSRMHGPFLKSQEIMAAA
GRHLDVLSVNVYNYWTPPEDLMAMWERESGKPFLVTEWYVKADDAGYKNTTGAGWIVPTQKDRAAFYQNFVLALLESRTC
VGWHWFKYMDNDPDDPRTDPSNRDSNKGMVTIRYQPYRDLVAGMKAINREIYPLADHFDVRP

Specific function: Hydrolyzes agarose to yield predominantly neoagarotetraose and neoagarohexaose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 50 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013529
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02449 Glyco_hydro_42 [H]

EC number: =3.2.1.81 [H]

Molecular weight: Translated: 52428; Mature: 52428

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRQFTLSVLAAHAARGLRAQDLPMVKSRRKPTDEWKEYPTRTLDRVAEFQPGARTIAL
CCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHCCHHHHHHHHHCCCCCEEEEE
DQYGGRADRKDKATGFFYAKKLGKRWFLIDPDGHPYLQAGVCSLARGSSSVNQAALKERF
ECCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
GTPERWAAETSDLLRENGFTASGGWSDVDLLRGAPHPIAYCVMSNFMGDFGRAKSMVHQQ
CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PGHLGYPQDCIPVFHPEFAAACDRTARPLAAHKDDPWLFGYFSDNELPAPADLLDRHLKL
CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHEE
DAADPNLAPGFEAARQWLRERKGESVEISDADRAAFRGYVFDRYFATTTTAIRRYDPNHL
CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
CIGSRMHGPFLKSQEIMAAAGRHLDVLSVNVYNYWTPPEDLMAMWERESGKPFLVTEWYV
EECCCCCCCCCCCHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEEEE
KADDAGYKNTTGAGWIVPTQKDRAAFYQNFVLALLESRTCVGWHWFKYMDNDPDDPRTDP
EECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEHHCCCCCCCCCCCC
SNRDSNKGMVTIRYQPYRDLVAGMKAINREIYPLADHFDVRP
CCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNRRQFTLSVLAAHAARGLRAQDLPMVKSRRKPTDEWKEYPTRTLDRVAEFQPGARTIAL
CCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHCCHHHHHHHHHCCCCCEEEEE
DQYGGRADRKDKATGFFYAKKLGKRWFLIDPDGHPYLQAGVCSLARGSSSVNQAALKERF
ECCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
GTPERWAAETSDLLRENGFTASGGWSDVDLLRGAPHPIAYCVMSNFMGDFGRAKSMVHQQ
CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PGHLGYPQDCIPVFHPEFAAACDRTARPLAAHKDDPWLFGYFSDNELPAPADLLDRHLKL
CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHEE
DAADPNLAPGFEAARQWLRERKGESVEISDADRAAFRGYVFDRYFATTTTAIRRYDPNHL
CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
CIGSRMHGPFLKSQEIMAAAGRHLDVLSVNVYNYWTPPEDLMAMWERESGKPFLVTEWYV
EECCCCCCCCCCCHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEEEE
KADDAGYKNTTGAGWIVPTQKDRAAFYQNFVLALLESRTCVGWHWFKYMDNDPDDPRTDP
EECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEHHCCCCCCCCCCCC
SNRDSNKGMVTIRYQPYRDLVAGMKAINREIYPLADHFDVRP
CCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8193156 [H]