Click here to switch to the map view.

The map label for this gene is ydgJ [C]

Identifier: 116619813

GI number: 116619813

Start: 856087

End: 857478

Strand: Direct

Name: ydgJ [C]

Synonym: Acid_0683

Alternate gene names: 116619813

Gene position: 856087-857478 (Clockwise)

Preceding gene: 116619810

Following gene: 116619814

Centisome position: 8.59

GC content: 59.99

Gene sequence:

>1392_bases
ATGCAAGACTCGCTTGATCGCAGAGATTTTCTGAAGACCGTGGGAGCGACCGGAATCGCCGCCACTTCCGCCATGGCTGC
CAAGAGCAGCAGCAAGACATCGGGCCGCGTCATCGGCGCCAACGACCGGATCAACATCGGCGTTATCGGCTGCGGCGGAC
GCGGGGCTTATGACGCCTCGGCCTTCGACGCCTTCGGCAAAAAGAACAACGCTTGCCAACTCGTAGCCGCGTGCGACGTT
TACGAAAAGCGCAAGAAGCGCGTCGCCGACCGCTACAAGGTGAAGGGCTACCTGGATTACCGGGAACTGCTCAACCAGCC
CGACATCGACGCGGTGATCATCGCCACGCCAGATCACTGGCACGGCAAGATGGCGATGGACGCGATGGACTCCGGCAAGG
ATGTCTATCTCGAAAAACCCATGGTCCACACCAACGACGAAGCACGCCAGTTGGTGGCCACCGTGAAGGAAACCAAGCGC
ATTCTCCAGGTCGGCTCCCAGACCACCTCCGCCGACATCTGGTGGAAGGCCAAGAAGGCGATCGCCGACGGCATGATCGG
GCAGATGATCGAAAGCCAGGGATCCTATCACCGCAACGGCACCGAAGGCGAATGGAACTGGCCGATCGATGCCGGCGCCG
GCCCCGAGGGCAAGGGCGATGACTACATCGATTGGAACATGTGGCTCGGCACTCAGTACAAACTCGCGCCCAAGCGCGCC
TGGGATGCCGACCGCTTCTTCCGCTTCCGCAAGTATTGGGATTATTCCCTGGGCATTGCGAGCGATCTGTTCTATCACGT
GATCGCGCCCCTCAACATTTGCTGGGACGAACCGCAGTTCCCCACCAAAGTTATGGCGACCGGCGGAATTTACGTCTTTA
AGACGCTTCCGGACGGCAAACCCGACCGCGAGGTGCCGGACACGTTCCACCTGCTGGCCGAATATGCCAAGGGCCACTCG
CTGGTGCTCAGTTCCTCCATGGCCAACGACACCCACATTCCCGGCATGATCCGCGGGCATGAGGGAACCATCATCATGGT
GGAGCACGGCCAGTTCGAGCGCAATGTCCCCTACATCACGGTGAAACCGCAGGTGAAGAACATGCGCGAAAACGGCCAGG
TCAAACAGGTCGCCATCGGCGGCGATGCCTACGAGAAGAAATTCGGGCTCAAGGACATCCAGATTCCGATCGACCAGAGG
GACATGATGGATGCGCACATCGACAACTTCCTGAGTTGCATGCGCAGTCGCGAGAAACCGCACCTGGATGTCGAAACCGG
CGCCCGGGCGGTAGTCGTCATCAACCTCGCCGCGCAGTCGTATCGCGAAGGCAAGACCCTCTATTGGGACGAGAAGCACT
GGAAGGCTTCCGACAAACCCGTCAAGGCGTAG

Upstream 100 bases:

>100_bases
ATGCACACGCTTGCAATAAAACCCGAAAAGAGCTTTAGTAGTGATAACGGTAGAACCAGCTCGTAACGGCCACGTCTGCC
AATCTGAAGAAGGAGTTGTC

Downstream 100 bases:

>100_bases
TCATCAGTAAGTCCCGGGAAGGGCGGCAGCGCCCTTCCCGCTTTGGTACACCCCGTCCCAACTGCGAACACTCCCCACCT
GGATTTCTGCCCTAACCCCA

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MQDSLDRRDFLKTVGATGIAATSAMAAKSSSKTSGRVIGANDRINIGVIGCGGRGAYDASAFDAFGKKNNACQLVAACDV
YEKRKKRVADRYKVKGYLDYRELLNQPDIDAVIIATPDHWHGKMAMDAMDSGKDVYLEKPMVHTNDEARQLVATVKETKR
ILQVGSQTTSADIWWKAKKAIADGMIGQMIESQGSYHRNGTEGEWNWPIDAGAGPEGKGDDYIDWNMWLGTQYKLAPKRA
WDADRFFRFRKYWDYSLGIASDLFYHVIAPLNICWDEPQFPTKVMATGGIYVFKTLPDGKPDREVPDTFHLLAEYAKGHS
LVLSSSMANDTHIPGMIRGHEGTIIMVEHGQFERNVPYITVKPQVKNMRENGQVKQVAIGGDAYEKKFGLKDIQIPIDQR
DMMDAHIDNFLSCMRSREKPHLDVETGARAVVVINLAAQSYREGKTLYWDEKHWKASDKPVKA

Sequences:

>Translated_463_residues
MQDSLDRRDFLKTVGATGIAATSAMAAKSSSKTSGRVIGANDRINIGVIGCGGRGAYDASAFDAFGKKNNACQLVAACDV
YEKRKKRVADRYKVKGYLDYRELLNQPDIDAVIIATPDHWHGKMAMDAMDSGKDVYLEKPMVHTNDEARQLVATVKETKR
ILQVGSQTTSADIWWKAKKAIADGMIGQMIESQGSYHRNGTEGEWNWPIDAGAGPEGKGDDYIDWNMWLGTQYKLAPKRA
WDADRFFRFRKYWDYSLGIASDLFYHVIAPLNICWDEPQFPTKVMATGGIYVFKTLPDGKPDREVPDTFHLLAEYAKGHS
LVLSSSMANDTHIPGMIRGHEGTIIMVEHGQFERNVPYITVKPQVKNMRENGQVKQVAIGGDAYEKKFGLKDIQIPIDQR
DMMDAHIDNFLSCMRSREKPHLDVETGARAVVVINLAAQSYREGKTLYWDEKHWKASDKPVKA
>Mature_463_residues
MQDSLDRRDFLKTVGATGIAATSAMAAKSSSKTSGRVIGANDRINIGVIGCGGRGAYDASAFDAFGKKNNACQLVAACDV
YEKRKKRVADRYKVKGYLDYRELLNQPDIDAVIIATPDHWHGKMAMDAMDSGKDVYLEKPMVHTNDEARQLVATVKETKR
ILQVGSQTTSADIWWKAKKAIADGMIGQMIESQGSYHRNGTEGEWNWPIDAGAGPEGKGDDYIDWNMWLGTQYKLAPKRA
WDADRFFRFRKYWDYSLGIASDLFYHVIAPLNICWDEPQFPTKVMATGGIYVFKTLPDGKPDREVPDTFHLLAEYAKGHS
LVLSSSMANDTHIPGMIRGHEGTIIMVEHGQFERNVPYITVKPQVKNMRENGQVKQVAIGGDAYEKKFGLKDIQIPIDQR
DMMDAHIDNFLSCMRSREKPHLDVETGARAVVVINLAAQSYREGKTLYWDEKHWKASDKPVKA

Specific function: Glycosidase [H]

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=174, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311
- InterPro:   IPR019546 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF10518 TAT_signal [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 51923; Mature: 51923

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDSLDRRDFLKTVGATGIAATSAMAAKSSSKTSGRVIGANDRINIGVIGCGGRGAYDAS
CCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCH
AFDAFGKKNNACQLVAACDVYEKRKKRVADRYKVKGYLDYRELLNQPDIDAVIIATPDHW
HHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHEEEECHHHHCCCCCCCEEEEECCCCC
HGKMAMDAMDSGKDVYLEKPMVHTNDEARQLVATVKETKRILQVGSQTTSADIWWKAKKA
CCCEEEHHHCCCCEEEEECCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHH
IADGMIGQMIESQGSYHRNGTEGEWNWPIDAGAGPEGKGDDYIDWNMWLGTQYKLAPKRA
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCC
WDADRFFRFRKYWDYSLGIASDLFYHVIAPLNICWDEPQFPTKVMATGGIYVFKTLPDGK
CCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHEECCCCCCCCEEEECCCEEEEEECCCCC
PDREVPDTFHLLAEYAKGHSLVLSSSMANDTHIPGMIRGHEGTIIMVEHGQFERNVPYIT
CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCEEE
VKPQVKNMRENGQVKQVAIGGDAYEKKFGLKDIQIPIDQRDMMDAHIDNFLSCMRSREKP
ECHHHHHHCCCCCEEEEEECCCHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCC
HLDVETGARAVVVINLAAQSYREGKTLYWDEKHWKASDKPVKA
CEECCCCCEEEEEEEECHHHHCCCCCEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MQDSLDRRDFLKTVGATGIAATSAMAAKSSSKTSGRVIGANDRINIGVIGCGGRGAYDAS
CCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCH
AFDAFGKKNNACQLVAACDVYEKRKKRVADRYKVKGYLDYRELLNQPDIDAVIIATPDHW
HHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHEEEECHHHHCCCCCCCEEEEECCCCC
HGKMAMDAMDSGKDVYLEKPMVHTNDEARQLVATVKETKRILQVGSQTTSADIWWKAKKA
CCCEEEHHHCCCCEEEEECCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHH
IADGMIGQMIESQGSYHRNGTEGEWNWPIDAGAGPEGKGDDYIDWNMWLGTQYKLAPKRA
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCC
WDADRFFRFRKYWDYSLGIASDLFYHVIAPLNICWDEPQFPTKVMATGGIYVFKTLPDGK
CCHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHEECCCCCCCCEEEECCCEEEEEECCCCC
PDREVPDTFHLLAEYAKGHSLVLSSSMANDTHIPGMIRGHEGTIIMVEHGQFERNVPYIT
CCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCEEE
VKPQVKNMRENGQVKQVAIGGDAYEKKFGLKDIQIPIDQRDMMDAHIDNFLSCMRSREKP
ECHHHHHHCCCCCEEEEEECCCHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCC
HLDVETGARAVVVINLAAQSYREGKTLYWDEKHWKASDKPVKA
CEECCCCCEEEEEEEECHHHHCCCCCEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA