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The map label for this gene is recJ [H]

Identifier: 116619525

GI number: 116619525

Start: 484693

End: 486441

Strand: Direct

Name: recJ [H]

Synonym: Acid_0384

Alternate gene names: 116619525

Gene position: 484693-486441 (Clockwise)

Preceding gene: 116619524

Following gene: 116619526

Centisome position: 4.86

GC content: 65.87

Gene sequence:

>1749_bases
TTGGCGGGTATTTCTCCAAGAATTAGCCCGCTCTCGCGCTGGGTGCTGCCGGCGCCCGACGCCGCCGTGGTGGCCGCGCT
GGCGGCTGCCCTGAAAATCGGCATGCCGGCGGCGAGGGTGCTGGCCGCGCGCGGATTCGGGGACGCGGATGCGGCGCGGC
GATTCCTGGAGCCGGCCTTCGAGGAACTGCACGATCCGCTCAGCATGCGCGATATGCCGGCGGCGATCGAACGGATTGCG
CGCGCAATCCGCGACCGGGAACGCATCCTCATCTACGGCGATTACGACGTAGATGGGACCACCAGCGTGGTGCTGTTGAC
CAAGGTGATCGAACTAGCCGGCGGCGAGGCGCGGTATCACGTTCCGCACCGGCTGAAGGATGGCTACGGCATGCGGCCCG
AGGTGGTGGAGGCAGCGGCCGAGCAGGGCGTGAAGCTGATCGTCAGCGTGGATACCGGAATCCGCGCCGGGGAAGTGGTG
CGGCGCGCGAACGAGCTCGGCATCGACGTGATCGTCACCGACCATCATCTTCCGGAGACCGAGTTGCCGCCCGCGCTCGC
GGTGCTGAACCCGAACCGTCTGGATTGCGGGTACATGGAGAAGAACCTGTGCGGGGCGGGAGTGGCATTCAAAGTGATTC
AGGCGCTGCTGCCGCACATCGGGTGGCCTGCCGATAAAGTGCGGCGGGTATCGGAATCCTTTCTTAAGCTGGCGGCGATC
GCGACGGTTGCCGACGTGGTGCCGCTGACAGGCGAGAACCGGATCATCGTGGCGTGCGGGTTGCGCGGGCTGGGCACCGT
GCGGAACGTGGGGCTGCGGGCGCTGCTCGATGTGGCCGGGTTCACGCCCGATGCGACACCGCCGAATGCGCGGCAGGTGG
CCTTCCAGATTGCGCCGCGAATGAACGCGGCCGGGCGCATGGACACCGCACGCGCGGTGGTGGAGTTGTTTCTCACGAGC
GACGCGGAGCGGGCGCGCGAGCTGGCGAAGCAGCTGCACGAACAGAACGCCGAGCGCCAGGCAGTGGAAGCGGAGATCCG
CGAGACGTGCGAGCAGATCGCGGTGGACGGGGCGGAGAGCGCGCTGGTTTACTACGCGGAGAACTGGCATCGCGGCGTGC
TCGGGATTGTGGCGAGCCGGCTGGTGGAGCGGCTACATCGCCCGGTATTCGTGCTGAGCCGCAATCCGGAGGACGGGCTG
GCGCAGGGGTCGGGACGCAGCATTCCCGCGTTTCACCTGCTTGAGGCATTGGAATCGATGCCCGAACTCTTCCTGAAATT
CGGCGGGCACAAACACGCGGCGGGGGTCACGATGGAAGCGGCGCGAGTCGTGGAATTTCGCGAGCGTTTCAATGCGTTCG
CGGCGACGCGGCTGAGTGCCGAAGATTACCGGCGGCGCGTGGAAATCGACGCCGTGCTGGAGTTGGGAGAGATCAACGAG
CAGACGACCGGGGAGCTGTTCGGGCTGGCGCCATTCGGGCATGGGAATCCGCCGCCGATGTTCGCGGTGCTGAATGTGGA
AGTCGCGAGTTCGGTGGTGTGGAAGGAAAAACACCTGAAGCTGAATGTCCGGCAAAATGGGCGCGGTCTTTCGCTGAAGG
CCTGGAACTTCGCGGCTCGAGTAGGTGAACTGCCGCCGGGAGCGCGAGTGGACCTGGCGTTCAATCTGGAAGAGGATGCC
TATTCGGCGGCACGCGGATATCCTGCGTGGGCGGCAATTTTGCGCGACGTGAAACCCGCGGGAATCTGA

Upstream 100 bases:

>100_bases
GTGTACGAATTGCAGCCCGACTGGTATGAGGACTTCCTGATCATCGAGGACGAAATCGCCAACGCCATGGCCGCTGACGA
TCTGGACGAAGGCGATTCCC

Downstream 100 bases:

>100_bases
AAAACCGGGGTAATTTGCCGCCCTCTAAGCTGCCGCCTTTGGGGTCGTAAAGTCGCGGCAAGCTGCCACCGTTTTTGCGA
CAAGTCTGCTAGTAGTTTCT

Product: single-stranded-DNA-specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 582; Mature: 581

Protein sequence:

>582_residues
MAGISPRISPLSRWVLPAPDAAVVAALAAALKIGMPAARVLAARGFGDADAARRFLEPAFEELHDPLSMRDMPAAIERIA
RAIRDRERILIYGDYDVDGTTSVVLLTKVIELAGGEARYHVPHRLKDGYGMRPEVVEAAAEQGVKLIVSVDTGIRAGEVV
RRANELGIDVIVTDHHLPETELPPALAVLNPNRLDCGYMEKNLCGAGVAFKVIQALLPHIGWPADKVRRVSESFLKLAAI
ATVADVVPLTGENRIIVACGLRGLGTVRNVGLRALLDVAGFTPDATPPNARQVAFQIAPRMNAAGRMDTARAVVELFLTS
DAERARELAKQLHEQNAERQAVEAEIRETCEQIAVDGAESALVYYAENWHRGVLGIVASRLVERLHRPVFVLSRNPEDGL
AQGSGRSIPAFHLLEALESMPELFLKFGGHKHAAGVTMEAARVVEFRERFNAFAATRLSAEDYRRRVEIDAVLELGEINE
QTTGELFGLAPFGHGNPPPMFAVLNVEVASSVVWKEKHLKLNVRQNGRGLSLKAWNFAARVGELPPGARVDLAFNLEEDA
YSAARGYPAWAAILRDVKPAGI

Sequences:

>Translated_582_residues
MAGISPRISPLSRWVLPAPDAAVVAALAAALKIGMPAARVLAARGFGDADAARRFLEPAFEELHDPLSMRDMPAAIERIA
RAIRDRERILIYGDYDVDGTTSVVLLTKVIELAGGEARYHVPHRLKDGYGMRPEVVEAAAEQGVKLIVSVDTGIRAGEVV
RRANELGIDVIVTDHHLPETELPPALAVLNPNRLDCGYMEKNLCGAGVAFKVIQALLPHIGWPADKVRRVSESFLKLAAI
ATVADVVPLTGENRIIVACGLRGLGTVRNVGLRALLDVAGFTPDATPPNARQVAFQIAPRMNAAGRMDTARAVVELFLTS
DAERARELAKQLHEQNAERQAVEAEIRETCEQIAVDGAESALVYYAENWHRGVLGIVASRLVERLHRPVFVLSRNPEDGL
AQGSGRSIPAFHLLEALESMPELFLKFGGHKHAAGVTMEAARVVEFRERFNAFAATRLSAEDYRRRVEIDAVLELGEINE
QTTGELFGLAPFGHGNPPPMFAVLNVEVASSVVWKEKHLKLNVRQNGRGLSLKAWNFAARVGELPPGARVDLAFNLEEDA
YSAARGYPAWAAILRDVKPAGI
>Mature_581_residues
AGISPRISPLSRWVLPAPDAAVVAALAAALKIGMPAARVLAARGFGDADAARRFLEPAFEELHDPLSMRDMPAAIERIAR
AIRDRERILIYGDYDVDGTTSVVLLTKVIELAGGEARYHVPHRLKDGYGMRPEVVEAAAEQGVKLIVSVDTGIRAGEVVR
RANELGIDVIVTDHHLPETELPPALAVLNPNRLDCGYMEKNLCGAGVAFKVIQALLPHIGWPADKVRRVSESFLKLAAIA
TVADVVPLTGENRIIVACGLRGLGTVRNVGLRALLDVAGFTPDATPPNARQVAFQIAPRMNAAGRMDTARAVVELFLTSD
AERARELAKQLHEQNAERQAVEAEIRETCEQIAVDGAESALVYYAENWHRGVLGIVASRLVERLHRPVFVLSRNPEDGLA
QGSGRSIPAFHLLEALESMPELFLKFGGHKHAAGVTMEAARVVEFRERFNAFAATRLSAEDYRRRVEIDAVLELGEINEQ
TTGELFGLAPFGHGNPPPMFAVLNVEVASSVVWKEKHLKLNVRQNGRGLSLKAWNFAARVGELPPGARVDLAFNLEEDAY
SAARGYPAWAAILRDVKPAGI

Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=525, Percent_Identity=37.1428571428571, Blast_Score=279, Evalue=3e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610
- InterPro:   IPR018779 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 63227; Mature: 63096

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGISPRISPLSRWVLPAPDAAVVAALAAALKIGMPAARVLAARGFGDADAARRFLEPAF
CCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHH
EELHDPLSMRDMPAAIERIARAIRDRERILIYGDYDVDGTTSVVLLTKVIELAGGEARYH
HHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
VPHRLKDGYGMRPEVVEAAAEQGVKLIVSVDTGIRAGEVVRRANELGIDVIVTDHHLPET
CCCHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCC
ELPPALAVLNPNRLDCGYMEKNLCGAGVAFKVIQALLPHIGWPADKVRRVSESFLKLAAI
CCCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ATVADVVPLTGENRIIVACGLRGLGTVRNVGLRALLDVAGFTPDATPPNARQVAFQIAPR
HHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEEECCC
MNAAGRMDTARAVVELFLTSDAERARELAKQLHEQNAERQAVEAEIRETCEQIAVDGAES
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
ALVYYAENWHRGVLGIVASRLVERLHRPVFVLSRNPEDGLAQGSGRSIPAFHLLEALESM
EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
PELFLKFGGHKHAAGVTMEAARVVEFRERFNAFAATRLSAEDYRRRVEIDAVLELGEINE
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
QTTGELFGLAPFGHGNPPPMFAVLNVEVASSVVWKEKHLKLNVRQNGRGLSLKAWNFAAR
CCCCCEEEECCCCCCCCCCEEEEEEHHHHHHHHEECCCEEEEEECCCCCCEEEHHHHHHH
VGELPPGARVDLAFNLEEDAYSAARGYPAWAAILRDVKPAGI
HCCCCCCCEEEEEEECCHHHHHHHCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AGISPRISPLSRWVLPAPDAAVVAALAAALKIGMPAARVLAARGFGDADAARRFLEPAF
CCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHH
EELHDPLSMRDMPAAIERIARAIRDRERILIYGDYDVDGTTSVVLLTKVIELAGGEARYH
HHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEE
VPHRLKDGYGMRPEVVEAAAEQGVKLIVSVDTGIRAGEVVRRANELGIDVIVTDHHLPET
CCCHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCCCC
ELPPALAVLNPNRLDCGYMEKNLCGAGVAFKVIQALLPHIGWPADKVRRVSESFLKLAAI
CCCCEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ATVADVVPLTGENRIIVACGLRGLGTVRNVGLRALLDVAGFTPDATPPNARQVAFQIAPR
HHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEEEECCC
MNAAGRMDTARAVVELFLTSDAERARELAKQLHEQNAERQAVEAEIRETCEQIAVDGAES
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
ALVYYAENWHRGVLGIVASRLVERLHRPVFVLSRNPEDGLAQGSGRSIPAFHLLEALESM
EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
PELFLKFGGHKHAAGVTMEAARVVEFRERFNAFAATRLSAEDYRRRVEIDAVLELGEINE
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
QTTGELFGLAPFGHGNPPPMFAVLNVEVASSVVWKEKHLKLNVRQNGRGLSLKAWNFAAR
CCCCCEEEECCCCCCCCCCEEEEEEHHHHHHHHEECCCEEEEEECCCCCCEEEHHHHHHH
VGELPPGARVDLAFNLEEDAYSAARGYPAWAAILRDVKPAGI
HCCCCCCCEEEEEEECCHHHHHHHCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]