Click here to switch to the map view.

The map label for this gene is flgC [H]

Identifier: 116619479

GI number: 116619479

Start: 434394

End: 434828

Strand: Direct

Name: flgC [H]

Synonym: Acid_0338

Alternate gene names: 116619479

Gene position: 434394-434828 (Clockwise)

Preceding gene: 116619478

Following gene: 116619480

Centisome position: 4.36

GC content: 60.23

Gene sequence:

>435_bases
GTGAGTTTGTTTTCTTTGTTATCCGTGGGCGCCTCCGGCATGTCCGCGCAACGCGCCCGCGCCGAGCTTCTGGTCGAAAA
CCTCGCCAATGCCGAAACCACCCGCACGCCTGAGGGTGGCCCCTACCGCCGCAAGGATGTCGTGTTCGAGACCACGACCA
CGGCGTCTCCCTTCGCCAGTGTTTTCAACTCGGAGTTGCAGTCCGTGAACGGCGTCGGTGTTTCGGATGTCGTGGTCGAT
TCCAGCGATCCCGAACGCCGCTACATGCCCGGCCATCCCGATGCGGATAAAGATGGTTACGTGGCCTTTCCCAAAATTAA
TACCGCCGAGGACATGGTAGATCTTATGGGCGCCTCACGCAGCTTCGAGGCCAACGTGGCGGCCATGTCCGCCGTCAAAG
ACATGATCCAGCGATCCATCGACCTGGCTCGCTAG

Upstream 100 bases:

>100_bases
CGCGCCTGCTGGCGGAAAATGCCCTCCGCTTTCAAGTGGCCTCGCAACTGATGAAGAGTCAAATCCGCGCCGTCCGGAGC
GCCATTCAGGAGGGTAAATC

Downstream 100 bases:

>100_bases
GGTGAACCCATTAAGGTGACCAATGGCTGCTCCCATTCTTCCCATATCAGGCATCGCCCTCCCCGAGCTTATTCGTCCCG
CCGGACAACCGTCGTCCGGC

Product: flagellar basal-body rod protein FlgC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MSLFSLLSVGASGMSAQRARAELLVENLANAETTRTPEGGPYRRKDVVFETTTTASPFASVFNSELQSVNGVGVSDVVVD
SSDPERRYMPGHPDADKDGYVAFPKINTAEDMVDLMGASRSFEANVAAMSAVKDMIQRSIDLAR

Sequences:

>Translated_144_residues
MSLFSLLSVGASGMSAQRARAELLVENLANAETTRTPEGGPYRRKDVVFETTTTASPFASVFNSELQSVNGVGVSDVVVD
SSDPERRYMPGHPDADKDGYVAFPKINTAEDMVDLMGASRSFEANVAAMSAVKDMIQRSIDLAR
>Mature_143_residues
SLFSLLSVGASGMSAQRARAELLVENLANAETTRTPEGGPYRRKDVVFETTTTASPFASVFNSELQSVNGVGVSDVVVDS
SDPERRYMPGHPDADKDGYVAFPKINTAEDMVDLMGASRSFEANVAAMSAVKDMIQRSIDLAR

Specific function: Unknown

COG id: COG1558

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787314, Length=144, Percent_Identity=36.1111111111111, Blast_Score=99, Evalue=8e-23,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR006299 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 15466; Mature: 15335

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFSLLSVGASGMSAQRARAELLVENLANAETTRTPEGGPYRRKDVVFETTTTASPFAS
CCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHH
VFNSELQSVNGVGVSDVVVDSSDPERRYMPGHPDADKDGYVAFPKINTAEDMVDLMGASR
HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCC
SFEANVAAMSAVKDMIQRSIDLAR
CCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLFSLLSVGASGMSAQRARAELLVENLANAETTRTPEGGPYRRKDVVFETTTTASPFAS
CHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHH
VFNSELQSVNGVGVSDVVVDSSDPERRYMPGHPDADKDGYVAFPKINTAEDMVDLMGASR
HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHCCCC
SFEANVAAMSAVKDMIQRSIDLAR
CCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]