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The map label for this gene is clpV1 [H]

Identifier: 116619381

GI number: 116619381

Start: 321443

End: 324115

Strand: Direct

Name: clpV1 [H]

Synonym: Acid_0239

Alternate gene names: 116619381

Gene position: 321443-324115 (Clockwise)

Preceding gene: 116619380

Following gene: 116619382

Centisome position: 3.23

GC content: 63.3

Gene sequence:

>2673_bases
ATGGCGAATATTTTGAAGGCGATCGTTGGCAGGCTGAACGATACCATGCGCACGACGCTTGAGGGAGCGGCCGGCCTGTG
CCTGGCACGGACCCATTATGACGTTGAGATCGAACACGTCCTGACCAAACTGCTGGAAGCCGGCGGCACGGATTTCGCCG
GCATCCTGCAGCACTTCGACGTGGATAAGACGCGGCTCTCCGGCGAGCTCGCGCGCAGCCTCGACAAACTCAAGAGCGGC
AACGCGCGCACGCCCGCGTTCAGTCCGTCGCTGCTCCGCATGCTTCGCGAGGCCTGGACCGTCGGATCGCTGGAGTTTGG
CGCCGGGCAGGTGCGCTCCGGCACGGCCATCCTGGCGCTGGTGTCGGATGCCGAGCTGTCGCGGCTGGTCCACGATGTCA
GCAAGGAGTTCCGCAAGATCGAGTCCGAGGCGTTGCGGAAAGTACTGCCGGCGATCCTCGAGGATTCGCGCGAATCGTCC
GCGGAAGCGGACGCGATGCCGGCTTCGGGCGCGAGCTCGACGGGCGCCCCGAAGGCGGGCGGCAAGACGCCCAACCTGGA
TCAATTCACCGTGAACCTCACCGAAAACGCGCGCCAGGGAAAGACCGACACGGTGCTGGGCCGGGATTCCGAGATCCGTC
AGATGGTGGACATCCTCACCCGGCGGCGGCAGAACAACCCGATCCTCACCGGAGAAGCGGGCGTTGGCAAAACCGCCGTG
GTGGAGGGTTTCGCGCAGCGGATCGTGGCCGGCGACGTGCCGCCCAGTCTGCGTAACGTCACCGTCCGCTCGCTTGACCT
GACGCTCTTGCAGGCCGGCGCCGGAATTAAAGGCGAGTTCGAGAACCGTCTCAAGAGCCTGGTGGAGGAGGTCAAGTCGT
CGCCCACACCGATCATTCTATTCATCGACGAAGCCCACACCATGATCGGAGCCGGCGGGACCGCCGGACAAAACGACGCA
GCCAACATTCTGAAGCCTGCGCTGGCGCGCGGCGAACTGCGCACCATCGCCGCCACTACCTGGTCGGAATACAAGAAGTA
CTTCGAAAAGGACCCGGCGCTGGCGCGGCGCTTCCAGGTGGTCAAGGTGGAGGAGCCCACGGAAGCCAAGTGCCAGGTGA
TGCTGCGCGGCCTGGTTCCGGTGTTGGAGAAGCACCACAACGTGCGCATCCTCGACGAGGGCTTGGTCGCGGCAGTCAAG
TTCTCGCACCGCTATCTCGCCGACCGGCAGCTTCCCGATAAGGCCGTGAGCGTACTCGACACGGCATGCGCGCGCCTTTC
CCTTGGGCAGAACGCCACGCCGCCTGCCATCGAAGACGCCATCCGCCAGATCGACGATTGCACGGTGCAGACGCGCATTC
TGGAGCGGGAATCCGCGCTGGGAGCAGACCATGCCGAGGGTTTGGCGGCGCTGGCCAAACAGAAGGCGGCAGAGGAAGGC
CGCCTGGCGGATTTACAGCAGCGCTGGCAGAAGGAGCGCGACTTGGTCGGCAAGATCCGCGAGGTCCGCGGCAAGCTGGA
GACCGCAGCCGGCGCACCCGTCGCGGCAACCGAAGGCGCCGCCGCAGCGGTGCAAACCGCCGTCGATCCGGATGCCCTGC
GTGCGGAACTGGCTGGCTTGAATGCCGAACTGGAACAGCTTCAGGGTGAGAGTCCGCTGATGCGGGTCTGCGTGGATGGA
CAGATCGTGGGCGAGGTGGTGGCCGCTTGGACGGGCATTCCGATCGGCAAGATGCTCCGCGATGAGATGCAGTCGATCCT
CTCGCTGGAATCGCACCTGGGCCGCCGGGTAATCGGGCAGGATCACGCGCTCGGCATGCTCAGCGAGCGGATTCGTACCT
CGAAAGCCGGGTTGGAAGATCCCGGCAAACCGGTCGGCGTTTTCCTGCTGGTGGGACCGAGCGGCGTCGGCAAGACCGAG
ACCGCGACGGCGATGGCCGACCTGCTCTACGGCGGCGAGCGCAACATGATCACCATCAACATGTCGGAGTTCCAGGAAGC
GCATACGGTGTCCACGCTGAAGGGCTCGCCTCCCGGCTATGTCGGTTATGGCGAGGGCGGCGTCCTGACCGAAGCCGTGC
GGCGCCGGCCGTATTCGGTGGTGCTGCTGGACGAGGTGGAGAAGGCGCATCCGGATGTTCTGGAGCTTTTCTTCCAGGTA
TTCGACAAAGGCAAGATGGAAGATGGCGAAGGCCGTGAGATCGATTTCAAAAACACCATCATCATCCTCACATCCAACGC
CGCCACAGATACTCTGATGAAGCTCACCGCGGACCCGGAAACCATGCCGAGTCCCGCCGGGCTGGTGAAGGCCATCAAGC
CGGAGTTGAATAAAGTCTTCAAACCGGCCTTCCTGGGACGCCTGGTGATCATTCCCTACTTTCCTGTTCGCGACGAAGCC
TTGAAGATGATCGTCCGCCTGAAGCTGGGGAAAATTCAGCGCCGCATTCAGGAGACGCACCGCATCGCCATCACTTATGA
CGAGCCGCTTATCGAAGAAGTGGCAAAGCGCTGCACGGAAGTCGAGAGCGGAGCCCGCAACGTAGACAACATTCTGACCA
ATACTTTGTTGCCGGAGATCTCGCGCCGCATCCTAGGGCATCTCGCGGAACGGCAAAAGCCGGCGCCGATTCACGTCACG
ATTGGCGGCAGCGGAGAGTTTGTGTACCAATAA

Upstream 100 bases:

>100_bases
GGGCAGCAACTGGGCTGGACCAGCTGGATCAACTCAGCGGAGTTTGAGCACGACGCCGGGGAAACGGTACTCGAGTTATA
GATGCGGAGAGGATACTAAT

Downstream 100 bases:

>100_bases
AACTCCCGGACGGGCAATGGAGGAGATCTCATGTTCGCACATACAGACCGGCCCCTGAAGCTAACTACACCCCTCGGCGC
CGACGCTTTGATCTTGTTTC

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 890; Mature: 889

Protein sequence:

>890_residues
MANILKAIVGRLNDTMRTTLEGAAGLCLARTHYDVEIEHVLTKLLEAGGTDFAGILQHFDVDKTRLSGELARSLDKLKSG
NARTPAFSPSLLRMLREAWTVGSLEFGAGQVRSGTAILALVSDAELSRLVHDVSKEFRKIESEALRKVLPAILEDSRESS
AEADAMPASGASSTGAPKAGGKTPNLDQFTVNLTENARQGKTDTVLGRDSEIRQMVDILTRRRQNNPILTGEAGVGKTAV
VEGFAQRIVAGDVPPSLRNVTVRSLDLTLLQAGAGIKGEFENRLKSLVEEVKSSPTPIILFIDEAHTMIGAGGTAGQNDA
ANILKPALARGELRTIAATTWSEYKKYFEKDPALARRFQVVKVEEPTEAKCQVMLRGLVPVLEKHHNVRILDEGLVAAVK
FSHRYLADRQLPDKAVSVLDTACARLSLGQNATPPAIEDAIRQIDDCTVQTRILERESALGADHAEGLAALAKQKAAEEG
RLADLQQRWQKERDLVGKIREVRGKLETAAGAPVAATEGAAAAVQTAVDPDALRAELAGLNAELEQLQGESPLMRVCVDG
QIVGEVVAAWTGIPIGKMLRDEMQSILSLESHLGRRVIGQDHALGMLSERIRTSKAGLEDPGKPVGVFLLVGPSGVGKTE
TATAMADLLYGGERNMITINMSEFQEAHTVSTLKGSPPGYVGYGEGGVLTEAVRRRPYSVVLLDEVEKAHPDVLELFFQV
FDKGKMEDGEGREIDFKNTIIILTSNAATDTLMKLTADPETMPSPAGLVKAIKPELNKVFKPAFLGRLVIIPYFPVRDEA
LKMIVRLKLGKIQRRIQETHRIAITYDEPLIEEVAKRCTEVESGARNVDNILTNTLLPEISRRILGHLAERQKPAPIHVT
IGGSGEFVYQ

Sequences:

>Translated_890_residues
MANILKAIVGRLNDTMRTTLEGAAGLCLARTHYDVEIEHVLTKLLEAGGTDFAGILQHFDVDKTRLSGELARSLDKLKSG
NARTPAFSPSLLRMLREAWTVGSLEFGAGQVRSGTAILALVSDAELSRLVHDVSKEFRKIESEALRKVLPAILEDSRESS
AEADAMPASGASSTGAPKAGGKTPNLDQFTVNLTENARQGKTDTVLGRDSEIRQMVDILTRRRQNNPILTGEAGVGKTAV
VEGFAQRIVAGDVPPSLRNVTVRSLDLTLLQAGAGIKGEFENRLKSLVEEVKSSPTPIILFIDEAHTMIGAGGTAGQNDA
ANILKPALARGELRTIAATTWSEYKKYFEKDPALARRFQVVKVEEPTEAKCQVMLRGLVPVLEKHHNVRILDEGLVAAVK
FSHRYLADRQLPDKAVSVLDTACARLSLGQNATPPAIEDAIRQIDDCTVQTRILERESALGADHAEGLAALAKQKAAEEG
RLADLQQRWQKERDLVGKIREVRGKLETAAGAPVAATEGAAAAVQTAVDPDALRAELAGLNAELEQLQGESPLMRVCVDG
QIVGEVVAAWTGIPIGKMLRDEMQSILSLESHLGRRVIGQDHALGMLSERIRTSKAGLEDPGKPVGVFLLVGPSGVGKTE
TATAMADLLYGGERNMITINMSEFQEAHTVSTLKGSPPGYVGYGEGGVLTEAVRRRPYSVVLLDEVEKAHPDVLELFFQV
FDKGKMEDGEGREIDFKNTIIILTSNAATDTLMKLTADPETMPSPAGLVKAIKPELNKVFKPAFLGRLVIIPYFPVRDEA
LKMIVRLKLGKIQRRIQETHRIAITYDEPLIEEVAKRCTEVESGARNVDNILTNTLLPEISRRILGHLAERQKPAPIHVT
IGGSGEFVYQ
>Mature_889_residues
ANILKAIVGRLNDTMRTTLEGAAGLCLARTHYDVEIEHVLTKLLEAGGTDFAGILQHFDVDKTRLSGELARSLDKLKSGN
ARTPAFSPSLLRMLREAWTVGSLEFGAGQVRSGTAILALVSDAELSRLVHDVSKEFRKIESEALRKVLPAILEDSRESSA
EADAMPASGASSTGAPKAGGKTPNLDQFTVNLTENARQGKTDTVLGRDSEIRQMVDILTRRRQNNPILTGEAGVGKTAVV
EGFAQRIVAGDVPPSLRNVTVRSLDLTLLQAGAGIKGEFENRLKSLVEEVKSSPTPIILFIDEAHTMIGAGGTAGQNDAA
NILKPALARGELRTIAATTWSEYKKYFEKDPALARRFQVVKVEEPTEAKCQVMLRGLVPVLEKHHNVRILDEGLVAAVKF
SHRYLADRQLPDKAVSVLDTACARLSLGQNATPPAIEDAIRQIDDCTVQTRILERESALGADHAEGLAALAKQKAAEEGR
LADLQQRWQKERDLVGKIREVRGKLETAAGAPVAATEGAAAAVQTAVDPDALRAELAGLNAELEQLQGESPLMRVCVDGQ
IVGEVVAAWTGIPIGKMLRDEMQSILSLESHLGRRVIGQDHALGMLSERIRTSKAGLEDPGKPVGVFLLVGPSGVGKTET
ATAMADLLYGGERNMITINMSEFQEAHTVSTLKGSPPGYVGYGEGGVLTEAVRRRPYSVVLLDEVEKAHPDVLELFFQVF
DKGKMEDGEGREIDFKNTIIILTSNAATDTLMKLTADPETMPSPAGLVKAIKPELNKVFKPAFLGRLVIIPYFPVRDEAL
KMIVRLKLGKIQRRIQETHRIAITYDEPLIEEVAKRCTEVESGARNVDNILTNTLLPEISRRILGHLAERQKPAPIHVTI
GGSGEFVYQ

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=309, Percent_Identity=35.2750809061489, Blast_Score=172, Evalue=1e-42,
Organism=Escherichia coli, GI1788943, Length=689, Percent_Identity=41.6545718432511, Blast_Score=530, Evalue=1e-151,
Organism=Escherichia coli, GI1787109, Length=424, Percent_Identity=37.5, Blast_Score=240, Evalue=2e-64,
Organism=Saccharomyces cerevisiae, GI6320464, Length=699, Percent_Identity=40.2002861230329, Blast_Score=474, Evalue=1e-134,
Organism=Saccharomyces cerevisiae, GI6323002, Length=717, Percent_Identity=36.8200836820084, Blast_Score=454, Evalue=1e-128,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 96449; Mature: 96318

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANILKAIVGRLNDTMRTTLEGAAGLCLARTHYDVEIEHVLTKLLEAGGTDFAGILQHFD
CHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEHHHHHHHHHHCCCCCHHHHHHHCC
VDKTRLSGELARSLDKLKSGNARTPAFSPSLLRMLREAWTVGSLEFGAGQVRSGTAILAL
CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEE
VSDAELSRLVHDVSKEFRKIESEALRKVLPAILEDSRESSAEADAMPASGASSTGAPKAG
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHCCCCCCCCCCCCCCCCC
GKTPNLDQFTVNLTENARQGKTDTVLGRDSEIRQMVDILTRRRQNNPILTGEAGVGKTAV
CCCCCCCEEEEEECCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHH
VEGFAQRIVAGDVPPSLRNVTVRSLDLTLLQAGAGIKGEFENRLKSLVEEVKSSPTPIIL
HHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
FIDEAHTMIGAGGTAGQNDAANILKPALARGELRTIAATTWSEYKKYFEKDPALARRFQV
EEECCCHHEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHEEE
VKVEEPTEAKCQVMLRGLVPVLEKHHNVRILDEGLVAAVKFSHRYLADRQLPDKAVSVLD
EEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHH
TACARLSLGQNATPPAIEDAIRQIDDCTVQTRILERESALGADHAEGLAALAKQKAAEEG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
RLADLQQRWQKERDLVGKIREVRGKLETAAGAPVAATEGAAAAVQTAVDPDALRAELAGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
NAELEQLQGESPLMRVCVDGQIVGEVVAAWTGIPIGKMLRDEMQSILSLESHLGRRVIGQ
CHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
DHALGMLSERIRTSKAGLEDPGKPVGVFLLVGPSGVGKTETATAMADLLYGGERNMITIN
CHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEE
MSEFQEAHTVSTLKGSPPGYVGYGEGGVLTEAVRRRPYSVVLLDEVEKAHPDVLELFFQV
HHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCCEEEEECCHHHCCHHHHHHHHHH
FDKGKMEDGEGREIDFKNTIIILTSNAATDTLMKLTADPETMPSPAGLVKAIKPELNKVF
HCCCCCCCCCCCEEECCCEEEEEECCCCHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHH
KPAFLGRLVIIPYFPVRDEALKMIVRLKLGKIQRRIQETHRIAITYDEPLIEEVAKRCTE
HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHH
VESGARNVDNILTNTLLPEISRRILGHLAERQKPAPIHVTIGGSGEFVYQ
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEC
>Mature Secondary Structure 
ANILKAIVGRLNDTMRTTLEGAAGLCLARTHYDVEIEHVLTKLLEAGGTDFAGILQHFD
HHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEHHHHHHHHHHCCCCCHHHHHHHCC
VDKTRLSGELARSLDKLKSGNARTPAFSPSLLRMLREAWTVGSLEFGAGQVRSGTAILAL
CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEE
VSDAELSRLVHDVSKEFRKIESEALRKVLPAILEDSRESSAEADAMPASGASSTGAPKAG
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHCCCCCCCCCCCCCCCCC
GKTPNLDQFTVNLTENARQGKTDTVLGRDSEIRQMVDILTRRRQNNPILTGEAGVGKTAV
CCCCCCCEEEEEECCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHH
VEGFAQRIVAGDVPPSLRNVTVRSLDLTLLQAGAGIKGEFENRLKSLVEEVKSSPTPIIL
HHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
FIDEAHTMIGAGGTAGQNDAANILKPALARGELRTIAATTWSEYKKYFEKDPALARRFQV
EEECCCHHEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHEEE
VKVEEPTEAKCQVMLRGLVPVLEKHHNVRILDEGLVAAVKFSHRYLADRQLPDKAVSVLD
EEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHH
TACARLSLGQNATPPAIEDAIRQIDDCTVQTRILERESALGADHAEGLAALAKQKAAEEG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
RLADLQQRWQKERDLVGKIREVRGKLETAAGAPVAATEGAAAAVQTAVDPDALRAELAGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
NAELEQLQGESPLMRVCVDGQIVGEVVAAWTGIPIGKMLRDEMQSILSLESHLGRRVIGQ
CHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
DHALGMLSERIRTSKAGLEDPGKPVGVFLLVGPSGVGKTETATAMADLLYGGERNMITIN
CHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEE
MSEFQEAHTVSTLKGSPPGYVGYGEGGVLTEAVRRRPYSVVLLDEVEKAHPDVLELFFQV
HHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHCCCCEEEEECCHHHCCHHHHHHHHHH
FDKGKMEDGEGREIDFKNTIIILTSNAATDTLMKLTADPETMPSPAGLVKAIKPELNKVF
HCCCCCCCCCCCEEECCCEEEEEECCCCHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHH
KPAFLGRLVIIPYFPVRDEALKMIVRLKLGKIQRRIQETHRIAITYDEPLIEEVAKRCTE
HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHH
VESGARNVDNILTNTLLPEISRRILGHLAERQKPAPIHVTIGGSGEFVYQ
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]