| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is atoS [C]
Identifier: 116619308
GI number: 116619308
Start: 210601
End: 212994
Strand: Direct
Name: atoS [C]
Synonym: Acid_0165
Alternate gene names: 116619308
Gene position: 210601-212994 (Clockwise)
Preceding gene: 116619307
Following gene: 116619310
Centisome position: 2.11
GC content: 63.53
Gene sequence:
>2394_bases ATGAACACCGGTTTGTTCGGGAAACTGACCACAGCCGTCATCATTCTCACCGCCTCGGCCTTCCTGATGATCTTTGCCGC CGGCGTTCCCGCAACGCCGAACCTGATGGCGCCGTGGTCTGCGCTGGCGTTCCTCATCGTCGGCTGCACTTTATGGAGTG CGCCCGCGCCACAACGGGTTGGGGCACTCCTGGTGTTTGCAATCGGCGCGATCCTGTCAGGCGAGCACCTGGCGCATGCG AGTTCGACGGCCTTCGACCGGCTGCTGTTTCCGCATCTGCTGCCGCATAGCGGTCTGGTGCCGGGACGTCCCGCGCCGCT GGCCGGCTTCCGCTACTGTCTGCTGGGAGTCATGTTGTTCCTAATGCCCGATCGCAGCCGGCGCCTGGTCCAGGTGCGGG AGTGGACCGCTGTCACGATCATCACGCTGTGCTATTTCGGATTCGTGGCGGTGATATCGAGTTGGGGTACGGCCACACCC GAGAGCATTTCGCCGTTCGCCGCAATCCTCGGAATTCTGGCGGCGATGAATGTCCTGGCGGCCGGGCCGGGCGGCATGTT GTTGCCTCTGCTGCGAGATCGCGGACCCGCGGGGCTGATTGCACGCACTCTCATGCCCGTGGGATTGATTTTTCCGGCGA TCACCATGGCGGTACGCCAAGTGGTCACAGGGGTTCGGATTGACGATAGCCGCCGCCCCGACGGAATCATCTTCGCCTCG GTGAACATCCTCGCGGCGCTGGCGATGGTGTGGATCTGCGCCTCGAAACTGCTTAACATCGACTTGCTCCGGCGCAAGGC CGAGGATGATCTGCGCGGTTCACGGGATGATCTGGAGCGCCGCGTCAAGCTGCGCACCCACGAGCTGCTCGACATGAATG AGCGGCTCGCGGTAGAGGTCGAAAACCGCCAGCGCACCCATAACGAGCTGCAGCAGACCAATGCCATGCTGGCTAGCCTG ATTGATGGCTGTCCGCTCGCGATCACGGCCTTCGGCCTGGATGGCGGCGTGCGCAAATCGAACGCCGCCGCCGAGAGCAT CGGCCTGGCTGATAACCCGGAGTGTCGCGCTCTGGCCGAATGCGCCGGCCGCGGCCAGACGGTCGCGGCGACGGAACTGG TCTGTAAGGTTCAGGGCAAGGCAATCCATCTTCATATCTGGGCGTCGCCGACCCTCACCCAGGACGGCCGCCTTGACGGC GTAGTGATGATGGCCGCCGATGTCAGCGAACGCAAAGCCCTGGAGGCGAATATCCAGCACAATCAGCGGCTGGAGAGCCT GGGCGTACTGGCGGGCGGCATCGCCCACGATTTCAATAATCTATTGACCGGCGTTCTGGGCAATGCCAGCGTGCTGCAGG ATCGCTTCCCCGGCGACTCGCGTGAAGCCCGAGCCGCCAGCGACCTGATCATGGCCGGCCAAGTCATGGCTAAGCTGACC TCGCAGATGCTGGCCTACTCAGGCCGCAGCCGCTTTCATATCGAGCGCATCGATCTTTCAATCGCGGTCCGGCAGATCTC GAACCTGGTGCAGGCCTCGATTCCGAAGAGCGTTCGCTTGAGTTTTGCGCTAGGCGAAGGGCTGCCCGCAATCGAGGGCG ATTCCAGCCAGCTGCAGCAGGTGGTGATGAACCTGGTGATCAACGGCGCCGAGGCCATCGGTACGGAGCAGGGTTCGGTC GAGGTGCAAACCCTGGCACGGCGCGCGGACCAGGCCGAGCTCGCAGCCGGCGTCACCGGCACCACCGTGCCGCCGGGAGA GTTCGTAGTGCTGGAAGTACGCGACACCGGTTCTGGAATGGACGAAGAGACCAGGACGCGGATTTTCGACCCGTTCTTCA CCACTAAATTCGCGGGGCGGGGCTTGGGCCTATCGGCGGTACTCGGAATCGTCCGAGCGCACCGCGGAACGCTCACGGTG GAGAGCCGTCCCGGCTACGGCACCAGGTTTCGCGCATTCTTCCCCTGTTCGGCCGCACACAAAGAGGCCGGCTTTCACAC ACTGACCGACCTTAAGCGCGGCTCCGGCACCATCCTGGTAGTGGACGACGAGGAGTTCGTGGTGCGGATGGCGCAATCGG TGCTGGAGGAAGCTGGATACGACGTGCTGAGCGCTTCGAACGGACGCGAAGCGCTGGACGTCTACACGGCGAAATCGGGG CGAATCGACGCGGTTTTGCTGGACATGACGATGCCGGTGATGGGCGGCGAAGAAACCATGCAGCACCTCGCCAGGCGCTG GCCGGACGCGACCGTCATCGCCACCAGCGGCTACAATCTTCAGGAAGCCGAATGCCGCTTTGGAGCCCGCACCGCTGCTT TTCTGCAGAAGCCTTACACCGCGACTCAATTGCGCTCGAAAATTGCCGAGGTGGTGCGGCCGCGCGCCGGTTGA
Upstream 100 bases:
>100_bases GTACAGCAGCCTGTTCCCGCTCTGGAAGTAAGGATGATTCCGGGCGTCTCCGGTTATCCTGATAGGATATTATGCCGGCA ATGACCGCGGAAGTGCTGAC
Downstream 100 bases:
>100_bases GCAGACGAAAAAAGGGAAATGCATTCACAAGAAGTCGGCCCACGGCCCCTTCGGCGAAGTGGCGGCTGCCGCCATTTCCT TAGAGTGATGCGCACGCAGC
Product: signal transduction histidine kinase nitrogen specific NtrB
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 797; Mature: 797
Protein sequence:
>797_residues MNTGLFGKLTTAVIILTASAFLMIFAAGVPATPNLMAPWSALAFLIVGCTLWSAPAPQRVGALLVFAIGAILSGEHLAHA SSTAFDRLLFPHLLPHSGLVPGRPAPLAGFRYCLLGVMLFLMPDRSRRLVQVREWTAVTIITLCYFGFVAVISSWGTATP ESISPFAAILGILAAMNVLAAGPGGMLLPLLRDRGPAGLIARTLMPVGLIFPAITMAVRQVVTGVRIDDSRRPDGIIFAS VNILAALAMVWICASKLLNIDLLRRKAEDDLRGSRDDLERRVKLRTHELLDMNERLAVEVENRQRTHNELQQTNAMLASL IDGCPLAITAFGLDGGVRKSNAAAESIGLADNPECRALAECAGRGQTVAATELVCKVQGKAIHLHIWASPTLTQDGRLDG VVMMAADVSERKALEANIQHNQRLESLGVLAGGIAHDFNNLLTGVLGNASVLQDRFPGDSREARAASDLIMAGQVMAKLT SQMLAYSGRSRFHIERIDLSIAVRQISNLVQASIPKSVRLSFALGEGLPAIEGDSSQLQQVVMNLVINGAEAIGTEQGSV EVQTLARRADQAELAAGVTGTTVPPGEFVVLEVRDTGSGMDEETRTRIFDPFFTTKFAGRGLGLSAVLGIVRAHRGTLTV ESRPGYGTRFRAFFPCSAAHKEAGFHTLTDLKRGSGTILVVDDEEFVVRMAQSVLEEAGYDVLSASNGREALDVYTAKSG RIDAVLLDMTMPVMGGEETMQHLARRWPDATVIATSGYNLQEAECRFGARTAAFLQKPYTATQLRSKIAEVVRPRAG
Sequences:
>Translated_797_residues MNTGLFGKLTTAVIILTASAFLMIFAAGVPATPNLMAPWSALAFLIVGCTLWSAPAPQRVGALLVFAIGAILSGEHLAHA SSTAFDRLLFPHLLPHSGLVPGRPAPLAGFRYCLLGVMLFLMPDRSRRLVQVREWTAVTIITLCYFGFVAVISSWGTATP ESISPFAAILGILAAMNVLAAGPGGMLLPLLRDRGPAGLIARTLMPVGLIFPAITMAVRQVVTGVRIDDSRRPDGIIFAS VNILAALAMVWICASKLLNIDLLRRKAEDDLRGSRDDLERRVKLRTHELLDMNERLAVEVENRQRTHNELQQTNAMLASL IDGCPLAITAFGLDGGVRKSNAAAESIGLADNPECRALAECAGRGQTVAATELVCKVQGKAIHLHIWASPTLTQDGRLDG VVMMAADVSERKALEANIQHNQRLESLGVLAGGIAHDFNNLLTGVLGNASVLQDRFPGDSREARAASDLIMAGQVMAKLT SQMLAYSGRSRFHIERIDLSIAVRQISNLVQASIPKSVRLSFALGEGLPAIEGDSSQLQQVVMNLVINGAEAIGTEQGSV EVQTLARRADQAELAAGVTGTTVPPGEFVVLEVRDTGSGMDEETRTRIFDPFFTTKFAGRGLGLSAVLGIVRAHRGTLTV ESRPGYGTRFRAFFPCSAAHKEAGFHTLTDLKRGSGTILVVDDEEFVVRMAQSVLEEAGYDVLSASNGREALDVYTAKSG RIDAVLLDMTMPVMGGEETMQHLARRWPDATVIATSGYNLQEAECRFGARTAAFLQKPYTATQLRSKIAEVVRPRAG >Mature_797_residues MNTGLFGKLTTAVIILTASAFLMIFAAGVPATPNLMAPWSALAFLIVGCTLWSAPAPQRVGALLVFAIGAILSGEHLAHA SSTAFDRLLFPHLLPHSGLVPGRPAPLAGFRYCLLGVMLFLMPDRSRRLVQVREWTAVTIITLCYFGFVAVISSWGTATP ESISPFAAILGILAAMNVLAAGPGGMLLPLLRDRGPAGLIARTLMPVGLIFPAITMAVRQVVTGVRIDDSRRPDGIIFAS VNILAALAMVWICASKLLNIDLLRRKAEDDLRGSRDDLERRVKLRTHELLDMNERLAVEVENRQRTHNELQQTNAMLASL IDGCPLAITAFGLDGGVRKSNAAAESIGLADNPECRALAECAGRGQTVAATELVCKVQGKAIHLHIWASPTLTQDGRLDG VVMMAADVSERKALEANIQHNQRLESLGVLAGGIAHDFNNLLTGVLGNASVLQDRFPGDSREARAASDLIMAGQVMAKLT SQMLAYSGRSRFHIERIDLSIAVRQISNLVQASIPKSVRLSFALGEGLPAIEGDSSQLQQVVMNLVINGAEAIGTEQGSV EVQTLARRADQAELAAGVTGTTVPPGEFVVLEVRDTGSGMDEETRTRIFDPFFTTKFAGRGLGLSAVLGIVRAHRGTLTV ESRPGYGTRFRAFFPCSAAHKEAGFHTLTDLKRGSGTILVVDDEEFVVRMAQSVLEEAGYDVLSASNGREALDVYTAKSG RIDAVLLDMTMPVMGGEETMQHLARRWPDATVIATSGYNLQEAECRFGARTAAFLQKPYTATQLRSKIAEVVRPRAG
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=364, Percent_Identity=26.6483516483516, Blast_Score=123, Evalue=6e-29, Organism=Escherichia coli, GI1790436, Length=253, Percent_Identity=28.8537549407115, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI48994928, Length=532, Percent_Identity=22.9323308270677, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI145693157, Length=278, Percent_Identity=26.978417266187, Blast_Score=86, Evalue=1e-17, Organism=Escherichia coli, GI1790300, Length=308, Percent_Identity=25.3246753246753, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI87081816, Length=347, Percent_Identity=25.0720461095101, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1788713, Length=432, Percent_Identity=23.3796296296296, Blast_Score=76, Evalue=8e-15, Organism=Escherichia coli, GI1786912, Length=286, Percent_Identity=26.5734265734266, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 85469; Mature: 85469
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN ; PS00290 IG_MHC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTGLFGKLTTAVIILTASAFLMIFAAGVPATPNLMAPWSALAFLIVGCTLWSAPAPQRV CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHH GALLVFAIGAILSGEHLAHASSTAFDRLLFPHLLPHSGLVPGRPAPLAGFRYCLLGVMLF HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH LMPDRSRRLVQVREWTAVTIITLCYFGFVAVISSWGTATPESISPFAAILGILAAMNVLA HCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH AGPGGMLLPLLRDRGPAGLIARTLMPVGLIFPAITMAVRQVVTGVRIDDSRRPDGIIFAS CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEH VNILAALAMVWICASKLLNIDLLRRKAEDDLRGSRDDLERRVKLRTHELLDMNERLAVEV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEE ENRQRTHNELQQTNAMLASLIDGCPLAITAFGLDGGVRKSNAAAESIGLADNPECRALAE HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCCHHHHHH CAGRGQTVAATELVCKVQGKAIHLHIWASPTLTQDGRLDGVVMMAADVSERKALEANIQH HCCCCCEEEHHHHHHEECCCEEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHCCHH NQRLESLGVLAGGIAHDFNNLLTGVLGNASVLQDRFPGDSREARAASDLIMAGQVMAKLT HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH SQMLAYSGRSRFHIERIDLSIAVRQISNLVQASIPKSVRLSFALGEGLPAIEGDSSQLQQ HHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCHHHHHH VVMNLVINGAEAIGTEQGSVEVQTLARRADQAELAAGVTGTTVPPGEFVVLEVRDTGSGM HHHHHHHCCHHHHCCCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCC DEETRTRIFDPFFTTKFAGRGLGLSAVLGIVRAHRGTLTVESRPGYGTRFRAFFPCSAAH CHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCHHH KEAGFHTLTDLKRGSGTILVVDDEEFVVRMAQSVLEEAGYDVLSASNGREALDVYTAKSG HHCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCCC RIDAVLLDMTMPVMGGEETMQHLARRWPDATVIATSGYNLQEAECRFGARTAAFLQKPYT CEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCHHHHHHHCCCH ATQLRSKIAEVVRPRAG HHHHHHHHHHHHCCCCC >Mature Secondary Structure MNTGLFGKLTTAVIILTASAFLMIFAAGVPATPNLMAPWSALAFLIVGCTLWSAPAPQRV CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHH GALLVFAIGAILSGEHLAHASSTAFDRLLFPHLLPHSGLVPGRPAPLAGFRYCLLGVMLF HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH LMPDRSRRLVQVREWTAVTIITLCYFGFVAVISSWGTATPESISPFAAILGILAAMNVLA HCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH AGPGGMLLPLLRDRGPAGLIARTLMPVGLIFPAITMAVRQVVTGVRIDDSRRPDGIIFAS CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEH VNILAALAMVWICASKLLNIDLLRRKAEDDLRGSRDDLERRVKLRTHELLDMNERLAVEV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEE ENRQRTHNELQQTNAMLASLIDGCPLAITAFGLDGGVRKSNAAAESIGLADNPECRALAE HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCCCHHHHHH CAGRGQTVAATELVCKVQGKAIHLHIWASPTLTQDGRLDGVVMMAADVSERKALEANIQH HCCCCCEEEHHHHHHEECCCEEEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHCCHH NQRLESLGVLAGGIAHDFNNLLTGVLGNASVLQDRFPGDSREARAASDLIMAGQVMAKLT HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH SQMLAYSGRSRFHIERIDLSIAVRQISNLVQASIPKSVRLSFALGEGLPAIEGDSSQLQQ HHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCHHHHHH VVMNLVINGAEAIGTEQGSVEVQTLARRADQAELAAGVTGTTVPPGEFVVLEVRDTGSGM HHHHHHHCCHHHHCCCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCC DEETRTRIFDPFFTTKFAGRGLGLSAVLGIVRAHRGTLTVESRPGYGTRFRAFFPCSAAH CHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCHHH KEAGFHTLTDLKRGSGTILVVDDEEFVVRMAQSVLEEAGYDVLSASNGREALDVYTAKSG HHCCCHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCCC RIDAVLLDMTMPVMGGEETMQHLARRWPDATVIATSGYNLQEAECRFGARTAAFLQKPYT CEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCHHHHHHHCCCH ATQLRSKIAEVVRPRAG HHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA