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The map label for this gene is ylmH [H]

Identifier: 116516882

GI number: 116516882

Start: 1491933

End: 1492718

Strand: Reverse

Name: ylmH [H]

Synonym: SPD_1475

Alternate gene names: 116516882

Gene position: 1492718-1491933 (Counterclockwise)

Preceding gene: 116516690

Following gene: 116515933

Centisome position: 72.95

GC content: 35.24

Gene sequence:

>786_bases
ATGAATAAAGGGATTTATCAGCATTTCTCCATAGAAGATCGTCCATTTCTTGACAAGGGAATGGAATGGATAAAGAAGGT
AGAAGATAGCTATGCTCCTTTTTTAACTCCTTTTATCAATCCTCATCAGGAGAAGCTATTAAAGATTTTGGCCAAAACCT
ATGGTCTTGCTTGTAGCAGTAGTGGGGAATTCGTCTCGAGTGAGTATGTTCGAGTTTTATTATACCCAGATTATTTCCAA
CCAGAGTTTTCAGATTTTGAAATATCTCTCCAGGAAATTGTGTATTCCAATAAATTTGAATATTTAACGCATGCTAAGAT
TTTAGGGACAGTCATCAATCAATTAGGGATTGAACGGAAACTTTTTGGAGATATCCTAGTAGATGAAGAACGGGCGCAGA
TTATGATTAATCAGCAGTTTCTTCTTCTCTTTCAAGATGGACTAAAGAAAATTGGTCGTATACCTGTTTCGCTGGAGGAA
CGTCCTTTCACCGAGAAAATAGATAAGCTAGAACAGTATCGAGAACTGGATTTATCTGTGTCTAGTTTTCGATTAGATGT
TCTTTTATCAAATGTTTTGAAACTATCTAGGAATCAAGCAAACCAGTTGATTGAAAAGAAACTTGTCCAAGTAAATTATC
ATGTGGTAGACAAATCAGATTACACTGTTCAAGTTGGAGACTTGATTAGTGTGAGAAAATTTGGTCGCTTGAGATTACTT
CAAGATAAGGGACAAACGAAAAAAGAGAAGAAAAAAATAACCGTCCAGTTATTATTAAGTAAGTGA

Upstream 100 bases:

>100_bases
TGCCTTTACAGATAGCGGGTCTTGATTTATCTGTTTGGGTCGCGATTGTTTTGGTTCGATTTTTAGGAGAAAACCTAGTG
CGTTTTCTGGCGATGATAGG

Downstream 100 bases:

>100_bases
GGAATAGAATGCCAATTACATCATTAGAAATAAAGGACAAGACTTTTGGAACTCGATTCAGAGGTTTTGATCCAGAAGAA
GTCGATGAATTTTTAGATAT

Product: YlmH protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MNKGIYQHFSIEDRPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLLYPDYFQ
PEFSDFEISLQEIVYSNKFEYLTHAKILGTVINQLGIERKLFGDILVDEERAQIMINQQFLLLFQDGLKKIGRIPVSLEE
RPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLRLL
QDKGQTKKEKKKITVQLLLSK

Sequences:

>Translated_261_residues
MNKGIYQHFSIEDRPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLLYPDYFQ
PEFSDFEISLQEIVYSNKFEYLTHAKILGTVINQLGIERKLFGDILVDEERAQIMINQQFLLLFQDGLKKIGRIPVSLEE
RPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLRLL
QDKGQTKKEKKKITVQLLLSK
>Mature_261_residues
MNKGIYQHFSIEDRPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVLLYPDYFQ
PEFSDFEISLQEIVYSNKFEYLTHAKILGTVINQLGIERKLFGDILVDEERAQIMINQQFLLLFQDGLKKIGRIPVSLEE
RPFTEKIDKLEQYRELDLSVSSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLRLL
QDKGQTKKEKKKITVQLLLSK

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30432; Mature: 30432

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKGIYQHFSIEDRPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHCCEECC
SGEFVSSEYVRVLLYPDYFQPEFSDFEISLQEIVYSNKFEYLTHAKILGTVINQLGIERK
CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
LFGDILVDEERAQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDLSV
HHHHHHCCCCHHEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCH
SSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLRLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEECCHHHHHHHHHHEEE
QDKGQTKKEKKKITVQLLLSK
CCCCCCHHHHHHEEEEEEECC
>Mature Secondary Structure
MNKGIYQHFSIEDRPFLDKGMEWIKKVEDSYAPFLTPFINPHQEKLLKILAKTYGLACSS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHCCEECC
SGEFVSSEYVRVLLYPDYFQPEFSDFEISLQEIVYSNKFEYLTHAKILGTVINQLGIERK
CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
LFGDILVDEERAQIMINQQFLLLFQDGLKKIGRIPVSLEERPFTEKIDKLEQYRELDLSV
HHHHHHCCCCHHEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCH
SSFRLDVLLSNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKFGRLRLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEECCHHHHHHHHHHEEE
QDKGQTKKEKKKITVQLLLSK
CCCCCCHHHHHHEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]