Click here to switch to the map view.

The map label for this gene is 116516592

Identifier: 116516592

GI number: 116516592

Start: 2039957

End: 2040499

Strand: Direct

Name: 116516592

Synonym: SPD_2060

Alternate gene names: NA

Gene position: 2039957-2040499 (Clockwise)

Preceding gene: 116516813

Following gene: 116516698

Centisome position: 99.7

GC content: 32.78

Gene sequence:

>543_bases
ATGCAAGAAAGTAACAAACGCTTAAAAACAAAGCGAACTATTGAAAATGCTATGGTACAATTACTGATGGAACAGCCATT
TGATAAAATTTCTACTGTCAAATTAGTAGAAAAAGCCGGAATTAGTCGTTCCAGCTTCTATACTCACTATAAGGATAAGT
ATGATATGATTGAGCACTATCAAAGCAAGCTATTCCATACATTTGAATATATTTTTCAAAAACATGCTCATCACAAAAGA
GACGCTATTTTAGAAGTTTTTGAATATCTAGAGTCAGAACCACTTCTGGCTGCCCTTCTTTCTGAAAATGGGACTAAAGA
AATCCAAAATTTCTTACGAAATAAACTTCATATCATGCTTAGTACAGATTTACAAAAGCGATTTATGCAACTGAATCTAA
ATACCACCGAATTAGAATATAGTAGCATCTATCTAACTCATGCACTTTTTGGTGTCTGCCAAACTTGGATTGCACATGGA
AAAAAAGAAAGTTCTCAAGAAATAACAGACTTCCTTATGAAAATGCTTGGTGATACAAATTGA

Upstream 100 bases:

>100_bases
TAAAATTTTGATATAATAGATTATACATTAAAAAATCTAAATTACAAGATAAAAAATCTATTTTTAGACATATAGTCTAA
TTTGTTTACAAGGAGGAAAT

Downstream 100 bases:

>100_bases
TACAAAAAGAGGAACACAGCTGTGTTCCCTTTTATCTATACTCCGCCAGTAGGACTCGAACCTACGACATCATGATTAAC
AGTCATGCGCTACTACCAAC

Product: transcriptional regulator, TetR family protein

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator TetR Family; TetR/AcrR Family Transcriptional Regulator; TetR Family Regulatory Protein

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MQESNKRLKTKRTIENAMVQLLMEQPFDKISTVKLVEKAGISRSSFYTHYKDKYDMIEHYQSKLFHTFEYIFQKHAHHKR
DAILEVFEYLESEPLLAALLSENGTKEIQNFLRNKLHIMLSTDLQKRFMQLNLNTTELEYSSIYLTHALFGVCQTWIAHG
KKESSQEITDFLMKMLGDTN

Sequences:

>Translated_180_residues
MQESNKRLKTKRTIENAMVQLLMEQPFDKISTVKLVEKAGISRSSFYTHYKDKYDMIEHYQSKLFHTFEYIFQKHAHHKR
DAILEVFEYLESEPLLAALLSENGTKEIQNFLRNKLHIMLSTDLQKRFMQLNLNTTELEYSSIYLTHALFGVCQTWIAHG
KKESSQEITDFLMKMLGDTN
>Mature_180_residues
MQESNKRLKTKRTIENAMVQLLMEQPFDKISTVKLVEKAGISRSSFYTHYKDKYDMIEHYQSKLFHTFEYIFQKHAHHKR
DAILEVFEYLESEPLLAALLSENGTKEIQNFLRNKLHIMLSTDLQKRFMQLNLNTTELEYSSIYLTHALFGVCQTWIAHG
KKESSQEITDFLMKMLGDTN

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21275; Mature: 21275

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQESNKRLKTKRTIENAMVQLLMEQPFDKISTVKLVEKAGISRSSFYTHYKDKYDMIEHY
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QSKLFHTFEYIFQKHAHHKRDAILEVFEYLESEPLLAALLSENGTKEIQNFLRNKLHIML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
STDLQKRFMQLNLNTTELEYSSIYLTHALFGVCQTWIAHGKKESSQEITDFLMKMLGDTN
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQESNKRLKTKRTIENAMVQLLMEQPFDKISTVKLVEKAGISRSSFYTHYKDKYDMIEHY
CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
QSKLFHTFEYIFQKHAHHKRDAILEVFEYLESEPLLAALLSENGTKEIQNFLRNKLHIML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
STDLQKRFMQLNLNTTELEYSSIYLTHALFGVCQTWIAHGKKESSQEITDFLMKMLGDTN
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA