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The map label for this gene is pepF [H]

Identifier: 116516584

GI number: 116516584

Start: 1588959

End: 1590755

Strand: Reverse

Name: pepF [H]

Synonym: SPD_1571

Alternate gene names: 116516584

Gene position: 1590755-1588959 (Counterclockwise)

Preceding gene: 116515693

Following gene: 116515449

Centisome position: 77.75

GC content: 45.69

Gene sequence:

>1797_bases
ATGGAACAAAAACACCGTTCAGAATTTCCAGAGAAGGAACTCTGGGACTTAACAGCCCTATACCAAGACCGTGAGGATTT
CTTGCGTGCAATCGAGAAAGCTCGCGAAGACATCAACCAGTTTAGCCGTGATTACAAGGGCAATCTTCACACTTTTGAGG
ATTTCGAGAAGGCCTTTGCGGAATTGGAACAGATCTACATTCAGATGAGCCATATTGGCAACTATGGTTTTATGCCTCAG
ACGACGGACTATAGCAATGACGAATTTGCCAATATTGCCCAAGCTGGGATGGAATTTGAAACAGATGCCAGCGTAGCCTT
GACCTTCTTTGACGATGCCTTGGTGGCAGCAGATGAGGAAGTCTTGGACCGTTTGGGTAAATTGCCACATTTAACAGCTG
CCATTCGTCAGGCTAAAATCAAAAAAGCCCACTACTTAGGGGCAGATGTGGAGAAGGCCTTGACAAATCTCGGTGAAGTT
TTCTACAGTCCGCAGGACATTTATACTAAGATGCGAGCTGGGGATTTTGAAATGGCTGACTTTGAAGCCCATGGCAAGAC
CTACAAAAACAGCTTTGTGACCTATGAGAATTTCTACCAAAACCATGAGGATGCTGAGGTTCGTGAGAAATCCTTCCGTT
CCTTCTCAGAGGGACTTCGTAAGCACCAAAATACGGCTGCAGCAGCCTATCTGGCTCAGGTCAAGTCTGAAAAACTCTTG
GCTGATATGAAGGGATACGACTCTGTCTTTGATTATCTTCTAGCTGAACAAGAAGTGGACCGTGTCATGTTTGACCGCCA
GATTGACCTCATCATGAAGGACTTTGCACCAGTCGCTCAGAGATACCTCAAGCATGTTGCCAAGGTAAATGGTCTTGAAA
AGATGACCTTTGCAGACTGGAAATTGGACTTGGACAGCGCCCTGAATCCTGAAGTGACTATTGACGATGCCTATGATTTG
GTCATGAAGTCGGTAGAACCTTTGGGGCAAGAATATTGTCAGGAAGTTGCTCGTTACCAAGAAGAGCGCTGGGTGGACTT
TGCTGCTAACAGTGGCAAGGATTCCGGTGGTTATGCGGCGGACCCATATCGCGTACACCCTTATGTACTCATGAGCTGGA
CAGGCCGTTTGAGCGATGTCTATACCTTGATTCATGAAATCGGGCATTCTGGTCAATTCATCTTTTCAGACAATCATCAA
AGTTACTTCAATGCCCATATGTCGACCTACTATGTTGAAGCACCGTCAACCTTCAATGAATTGCTACTCAGTGATTACTT
GGAGAACCAGTCTAATGACCCACGTCAAAAACGCTTCGCTCTGGCTCATCGCTTGACAGACACCTACTTCCATAACTTTA
TCACCCACCTCTTGGAAGCCGCCTTCCAGCGTAAGGTGTATACATTGATTGAAGAAGGGGAGACCTTTGGAGCAAGCAAG
CTCAACAGCATTATGAAGGAAGTTTTGACGGATTTCTGGGGAGATGCTATTGAAATTGACGATGATGCAACTCTGACTTG
GATGCGCCAAGCTCACTACTATATGGGCTTGTATAGTTACACTTACTCAGCAGGACTAGTTATCTCGACTGCTGGTTACC
TTCATCTAAAACATTCTGAAACTGGAGCTGAAGACTGGCTCAATCTCCTCAAATCAGGTGGTAGCAAGACACCACTTGAG
TCAGCCATGATTATCGGTGCTGATATTTCAACAGACAAACCACTCCGTGATACCATCCAATTCTTGTCTGACACAGTTGA
CCAGATTATCTCCTATAGTGCTGAGTTGGGAGAGTAG

Upstream 100 bases:

>100_bases
GCAGGCCTAGGTCCTCGTATTTTGCGAGCAGAAACAGCACCGCTTTACGCTTTATCAGCCCTTAGTGTTTTAGTAGAATT
AGAGAAATAAGAGGAAGAAA

Downstream 100 bases:

>100_bases
GGGAATAGAAAAATTTTTTAGAATGATGTTTATGGGCTTGTTAAGCGTCATTCTATTTGTCTTAGTTGTAGCTATTTTCA
AAAATGTCGTTGAAGATCGT

Product: oligoendopeptidase F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 598; Mature: 598

Protein sequence:

>598_residues
MEQKHRSEFPEKELWDLTALYQDREDFLRAIEKAREDINQFSRDYKGNLHTFEDFEKAFAELEQIYIQMSHIGNYGFMPQ
TTDYSNDEFANIAQAGMEFETDASVALTFFDDALVAADEEVLDRLGKLPHLTAAIRQAKIKKAHYLGADVEKALTNLGEV
FYSPQDIYTKMRAGDFEMADFEAHGKTYKNSFVTYENFYQNHEDAEVREKSFRSFSEGLRKHQNTAAAAYLAQVKSEKLL
ADMKGYDSVFDYLLAEQEVDRVMFDRQIDLIMKDFAPVAQRYLKHVAKVNGLEKMTFADWKLDLDSALNPEVTIDDAYDL
VMKSVEPLGQEYCQEVARYQEERWVDFAANSGKDSGGYAADPYRVHPYVLMSWTGRLSDVYTLIHEIGHSGQFIFSDNHQ
SYFNAHMSTYYVEAPSTFNELLLSDYLENQSNDPRQKRFALAHRLTDTYFHNFITHLLEAAFQRKVYTLIEEGETFGASK
LNSIMKEVLTDFWGDAIEIDDDATLTWMRQAHYYMGLYSYTYSAGLVISTAGYLHLKHSETGAEDWLNLLKSGGSKTPLE
SAMIIGADISTDKPLRDTIQFLSDTVDQIISYSAELGE

Sequences:

>Translated_598_residues
MEQKHRSEFPEKELWDLTALYQDREDFLRAIEKAREDINQFSRDYKGNLHTFEDFEKAFAELEQIYIQMSHIGNYGFMPQ
TTDYSNDEFANIAQAGMEFETDASVALTFFDDALVAADEEVLDRLGKLPHLTAAIRQAKIKKAHYLGADVEKALTNLGEV
FYSPQDIYTKMRAGDFEMADFEAHGKTYKNSFVTYENFYQNHEDAEVREKSFRSFSEGLRKHQNTAAAAYLAQVKSEKLL
ADMKGYDSVFDYLLAEQEVDRVMFDRQIDLIMKDFAPVAQRYLKHVAKVNGLEKMTFADWKLDLDSALNPEVTIDDAYDL
VMKSVEPLGQEYCQEVARYQEERWVDFAANSGKDSGGYAADPYRVHPYVLMSWTGRLSDVYTLIHEIGHSGQFIFSDNHQ
SYFNAHMSTYYVEAPSTFNELLLSDYLENQSNDPRQKRFALAHRLTDTYFHNFITHLLEAAFQRKVYTLIEEGETFGASK
LNSIMKEVLTDFWGDAIEIDDDATLTWMRQAHYYMGLYSYTYSAGLVISTAGYLHLKHSETGAEDWLNLLKSGGSKTPLE
SAMIIGADISTDKPLRDTIQFLSDTVDQIISYSAELGE
>Mature_598_residues
MEQKHRSEFPEKELWDLTALYQDREDFLRAIEKAREDINQFSRDYKGNLHTFEDFEKAFAELEQIYIQMSHIGNYGFMPQ
TTDYSNDEFANIAQAGMEFETDASVALTFFDDALVAADEEVLDRLGKLPHLTAAIRQAKIKKAHYLGADVEKALTNLGEV
FYSPQDIYTKMRAGDFEMADFEAHGKTYKNSFVTYENFYQNHEDAEVREKSFRSFSEGLRKHQNTAAAAYLAQVKSEKLL
ADMKGYDSVFDYLLAEQEVDRVMFDRQIDLIMKDFAPVAQRYLKHVAKVNGLEKMTFADWKLDLDSALNPEVTIDDAYDL
VMKSVEPLGQEYCQEVARYQEERWVDFAANSGKDSGGYAADPYRVHPYVLMSWTGRLSDVYTLIHEIGHSGQFIFSDNHQ
SYFNAHMSTYYVEAPSTFNELLLSDYLENQSNDPRQKRFALAHRLTDTYFHNFITHLLEAAFQRKVYTLIEEGETFGASK
LNSIMKEVLTDFWGDAIEIDDDATLTWMRQAHYYMGLYSYTYSAGLVISTAGYLHLKHSETGAEDWLNLLKSGGSKTPLE
SAMIIGADISTDKPLRDTIQFLSDTVDQIISYSAELGE

Specific function: Unknown

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 68656; Mature: 68656

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQKHRSEFPEKELWDLTALYQDREDFLRAIEKAREDINQFSRDYKGNLHTFEDFEKAFA
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
ELEQIYIQMSHIGNYGFMPQTTDYSNDEFANIAQAGMEFETDASVALTFFDDALVAADEE
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCCHH
VLDRLGKLPHLTAAIRQAKIKKAHYLGADVEKALTNLGEVFYSPQDIYTKMRAGDFEMAD
HHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
FEAHGKTYKNSFVTYENFYQNHEDAEVREKSFRSFSEGLRKHQNTAAAAYLAQVKSEKLL
HHHCCCHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADMKGYDSVFDYLLAEQEVDRVMFDRQIDLIMKDFAPVAQRYLKHVAKVNGLEKMTFADW
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCEECCC
KLDLDSALNPEVTIDDAYDLVMKSVEPLGQEYCQEVARYQEERWVDFAANSGKDSGGYAA
EEECCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DPYRVHPYVLMSWTGRLSDVYTLIHEIGHSGQFIFSDNHQSYFNAHMSTYYVEAPSTFNE
CCEEECCEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHEEEEECCCHHHH
LLLSDYLENQSNDPRQKRFALAHRLTDTYFHNFITHLLEAAFQRKVYTLIEEGETFGASK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LNSIMKEVLTDFWGDAIEIDDDATLTWMRQAHYYMGLYSYTYSAGLVISTAGYLHLKHSE
HHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCC
TGAEDWLNLLKSGGSKTPLESAMIIGADISTDKPLRDTIQFLSDTVDQIISYSAELGE
CCHHHHHHHHHCCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEQKHRSEFPEKELWDLTALYQDREDFLRAIEKAREDINQFSRDYKGNLHTFEDFEKAFA
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
ELEQIYIQMSHIGNYGFMPQTTDYSNDEFANIAQAGMEFETDASVALTFFDDALVAADEE
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCCHH
VLDRLGKLPHLTAAIRQAKIKKAHYLGADVEKALTNLGEVFYSPQDIYTKMRAGDFEMAD
HHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
FEAHGKTYKNSFVTYENFYQNHEDAEVREKSFRSFSEGLRKHQNTAAAAYLAQVKSEKLL
HHHCCCHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADMKGYDSVFDYLLAEQEVDRVMFDRQIDLIMKDFAPVAQRYLKHVAKVNGLEKMTFADW
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCEECCC
KLDLDSALNPEVTIDDAYDLVMKSVEPLGQEYCQEVARYQEERWVDFAANSGKDSGGYAA
EEECCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DPYRVHPYVLMSWTGRLSDVYTLIHEIGHSGQFIFSDNHQSYFNAHMSTYYVEAPSTFNE
CCEEECCEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHEEEEECCCHHHH
LLLSDYLENQSNDPRQKRFALAHRLTDTYFHNFITHLLEAAFQRKVYTLIEEGETFGASK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LNSIMKEVLTDFWGDAIEIDDDATLTWMRQAHYYMGLYSYTYSAGLVISTAGYLHLKHSE
HHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCC
TGAEDWLNLLKSGGSKTPLESAMIIGADISTDKPLRDTIQFLSDTVDQIISYSAELGE
CCHHHHHHHHHCCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]