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The map label for this gene is yitU [H]

Identifier: 116516403

GI number: 116516403

Start: 264766

End: 265578

Strand: Reverse

Name: yitU [H]

Synonym: SPD_0266

Alternate gene names: 116516403

Gene position: 265578-264766 (Counterclockwise)

Preceding gene: 116516191

Following gene: 116516519

Centisome position: 12.98

GC content: 40.47

Gene sequence:

>813_bases
ATGACGAAAAAAATTATTGCAGTTGACCTGGATGGAACCCTGCTCAACTCAGACAGTCAAATTTCTGACTTTACCAAAAA
AACCATCAAAAAAGTTGCTGAAAAAGGACATCAGGTTATTATTACGACAGGTCGCCCTTACCGTATGTCAAAAGATTTTT
ACCGTGAACTGGGCTTAGACACTCCTATGATTAACTTCAACGGATCCCTTACTCATTTACCAGACCAAGTTTGGGATTTT
GAAAAGTGTTTGACTGTAGACAAAAAATATCTGCTAGATATGGTTCAACGTTCAGAGGACATTCAAGCCGATTTTATCGC
TGGAGAATATCGTAAAAAATTCTACATTACAAATCCCAATGAAGAAATTGCCAATCCCAAACTATTTGGTGTAGAAGCTT
TCCAGCCTGAAGATCAATTCCAGCCTGAATTGGTGACCAAGAACCCTAACTGTATCCTCTTGCAGACCAGAGCCAGTGAC
AAATATGCCTTGGCAAAAGACATGAACGCCTTCTACCAGCATCAACTTTCTATCAATACCTGGGGAGGTCCGCTCAATAT
CCTTGAATGTACCCCAAAAGGTGTCAACAAGGCCTTTGCTTTGGACTACTTGCTCAAGATAATGAATCGTGACAAAAAAG
ATTTGATTGCCTTTGGAGATGAACATAATGATACCGAAATGCTCGCTTTTGCTGGGAAGGGTTATGCCATGAAAAATGCC
AATCCAGAGCTACTCCCTTATGCAGATGAGCAAATTTCCCTTACCAACGACCAAGATGGGGTTGCCAAAACCCTACAAGA
CTTATTCTTATAA

Upstream 100 bases:

>100_bases
AAATTAATCCAATTTCATTTTTTGTTTGGAATCTGCTTTTCTGCCTGCTTTCTGTTATAATAGAAGACATCTTATCTGAA
AACACACTAGAAAGGTCCAT

Downstream 100 bases:

>100_bases
CCTATACTGATACTCAATGAGAATCAAAGAGCAAACTAGGAAGCTAGCCGTAGGTTGCTCAAAGCACTGCTTTGAGGTTG
TAGATGAAGCTGACGTGGTT

Product: Cof family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MTKKIIAVDLDGTLLNSDSQISDFTKKTIKKVAEKGHQVIITTGRPYRMSKDFYRELGLDTPMINFNGSLTHLPDQVWDF
EKCLTVDKKYLLDMVQRSEDIQADFIAGEYRKKFYITNPNEEIANPKLFGVEAFQPEDQFQPELVTKNPNCILLQTRASD
KYALAKDMNAFYQHQLSINTWGGPLNILECTPKGVNKAFALDYLLKIMNRDKKDLIAFGDEHNDTEMLAFAGKGYAMKNA
NPELLPYADEQISLTNDQDGVAKTLQDLFL

Sequences:

>Translated_270_residues
MTKKIIAVDLDGTLLNSDSQISDFTKKTIKKVAEKGHQVIITTGRPYRMSKDFYRELGLDTPMINFNGSLTHLPDQVWDF
EKCLTVDKKYLLDMVQRSEDIQADFIAGEYRKKFYITNPNEEIANPKLFGVEAFQPEDQFQPELVTKNPNCILLQTRASD
KYALAKDMNAFYQHQLSINTWGGPLNILECTPKGVNKAFALDYLLKIMNRDKKDLIAFGDEHNDTEMLAFAGKGYAMKNA
NPELLPYADEQISLTNDQDGVAKTLQDLFL
>Mature_269_residues
TKKIIAVDLDGTLLNSDSQISDFTKKTIKKVAEKGHQVIITTGRPYRMSKDFYRELGLDTPMINFNGSLTHLPDQVWDFE
KCLTVDKKYLLDMVQRSEDIQADFIAGEYRKKFYITNPNEEIANPKLFGVEAFQPEDQFQPELVTKNPNCILLQTRASDK
YALAKDMNAFYQHQLSINTWGGPLNILECTPKGVNKAFALDYLLKIMNRDKKDLIAFGDEHNDTEMLAFAGKGYAMKNAN
PELLPYADEQISLTNDQDGVAKTLQDLFL

Specific function: Unknown

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI2367265, Length=290, Percent_Identity=28.9655172413793, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI48994981, Length=273, Percent_Identity=30.03663003663, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF08282 Hydrolase_3 [H]

EC number: NA

Molecular weight: Translated: 30734; Mature: 30603

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS01228 COF_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKIIAVDLDGTLLNSDSQISDFTKKTIKKVAEKGHQVIITTGRPYRMSKDFYRELGLD
CCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCC
TPMINFNGSLTHLPDQVWDFEKCLTVDKKYLLDMVQRSEDIQADFIAGEYRKKFYITNPN
CCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCEEEEECCC
EEIANPKLFGVEAFQPEDQFQPELVTKNPNCILLQTRASDKYALAKDMNAFYQHQLSINT
HHHCCCEEEEEECCCCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHEEEEEEE
WGGPLNILECTPKGVNKAFALDYLLKIMNRDKKDLIAFGDEHNDTEMLAFAGKGYAMKNA
CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHEEEECCCCCCCEEEEEECCCEEECCC
NPELLPYADEQISLTNDQDGVAKTLQDLFL
CCCEECCCCCEEEECCCCCHHHHHHHHHCC
>Mature Secondary Structure 
TKKIIAVDLDGTLLNSDSQISDFTKKTIKKVAEKGHQVIITTGRPYRMSKDFYRELGLD
CCEEEEEECCCEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCC
TPMINFNGSLTHLPDQVWDFEKCLTVDKKYLLDMVQRSEDIQADFIAGEYRKKFYITNPN
CCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCEEEEECCC
EEIANPKLFGVEAFQPEDQFQPELVTKNPNCILLQTRASDKYALAKDMNAFYQHQLSINT
HHHCCCEEEEEECCCCCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHEEEEEEE
WGGPLNILECTPKGVNKAFALDYLLKIMNRDKKDLIAFGDEHNDTEMLAFAGKGYAMKNA
CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHEEEECCCCCCCEEEEEECCCEEECCC
NPELLPYADEQISLTNDQDGVAKTLQDLFL
CCCEECCCCCEEEECCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9025291; 9384377 [H]