Click here to switch to the map view.

The map label for this gene is ygjR [H]

Identifier: 116516322

GI number: 116516322

Start: 1329479

End: 1330456

Strand: Direct

Name: ygjR [H]

Synonym: SPD_1311

Alternate gene names: 116516322

Gene position: 1329479-1330456 (Clockwise)

Preceding gene: 116517114

Following gene: 116516831

Centisome position: 64.98

GC content: 41.92

Gene sequence:

>978_bases
ATGCTAAAATTAGGTGTCATCGGAACTGGCGCTATCAGCCATCATTTCATAGAAGCAGCCCATACCAGTGGAGAATACCA
ACTGGTCGCAATCTATTCTAGAAAACTAGAAACTGCAGCAACCTTTGCTTCTCGCTATCAGAATATCCAACTATTCGATC
AATTAGAAGTCTTCTTCAAATCTTCTTTTGATTTAGTCTATATCGCCAGTCCAAACTCCTTACATTTTGCTCAGGCAAAA
GCTGCCTTGTCTGCTGGTAAACATGTTATTCTCGAAAAGCCAGCTGTCTCTCAACCACAAGAATGGTTTGATTTGATTCA
AACAGCTGAAAAAAATAACTGTTTTATCTTTGAAGCAGCTCGTAATTACCACGAGAAAGCCTTTACTACTATCAAAAACT
TTTTAGCAGATAAGCAAGTGTTAGGAGCAGATTTCAACTATGCCAAATACTCTTCCAAGATGCCTGACTTGTTGGCTGGA
CAAACACCAAATGTCTTTTCAGACCGTTTTGCTGGTGGAGCCCTCATGGATTTGGGGATTTATCCCCTCTATGCTGCTGT
TCGTCTTTTTGGAAAAGCCAATGACGCGACTTACCATGCTCAACAGCTTGACAATAGCATTGACCTAAATGGAGATGGTA
TCCTCTTCTACCCAGACTATCAAGTTCACATCAAGGCTGGAAAAAACATCACTTCCAATCTTCCTTGCGAGATTTATACA
ACAGATGGAACCTTGACTCTCAACACGATTGAGCATATTCGCTCAGCTATTTTTACCGACCACCAAGGAAATCAAGTCCA
GCTTCCTATCCAACAGGCTCCTCATACGATGACTGAGGAAGTCGCTGCATTTGCACACATGATCCAGCAACCAGATCTGA
ATCTCTACCAAACTTGGCTGTATGATGCAGGCTCTGTTCATGAGCTACTATATACCATGCGCCAGACTGCTGGCATTAGA
TTTGAGGCAGAAAAATGA

Upstream 100 bases:

>100_bases
AAAGCTAATAGCTTATTTGAAATTTTCTCCTCTCTGTTGGATAGTCCCGTCTATCTATGTTATAATGAAAGAAGGATTTA
AAATCGGAAAAGGAGTATTT

Downstream 100 bases:

>100_bases
AAACCAAACTACCGACTGAATGGCAAGAACTGAGTGACCAACTCGGTTTCCAAGAATTCACCCCCATTCAAACTCAACTA
TTTGAGCCCCTTCTTGCTGG

Product: oxidoreductase, Gfo/Idh/MocA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQLEVFFKSSFDLVYIASPNSLHFAQAK
AALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKMPDLLAG
QTPNVFSDRFAGGALMDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSNLPCEIYT
TDGTLTLNTIEHIRSAIFTDHQGNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWLYDAGSVHELLYTMRQTAGIR
FEAEK

Sequences:

>Translated_325_residues
MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQLEVFFKSSFDLVYIASPNSLHFAQAK
AALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKMPDLLAG
QTPNVFSDRFAGGALMDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSNLPCEIYT
TDGTLTLNTIEHIRSAIFTDHQGNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWLYDAGSVHELLYTMRQTAGIR
FEAEK
>Mature_325_residues
MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQLEVFFKSSFDLVYIASPNSLHFAQAK
AALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKMPDLLAG
QTPNVFSDRFAGGALMDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSNLPCEIYT
TDGTLTLNTIEHIRSAIFTDHQGNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWLYDAGSVHELLYTMRQTAGIR
FEAEK

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=243, Percent_Identity=27.1604938271605, Blast_Score=72, Evalue=9e-13,
Organism=Escherichia coli, GI145693182, Length=332, Percent_Identity=34.9397590361446, Blast_Score=172, Evalue=4e-44,
Organism=Drosophila melanogaster, GI24581117, Length=217, Percent_Identity=24.4239631336406, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36374; Mature: 36374

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQLEVFFK
CEEEEEEECCHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHC
SSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAA
CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEHHH
RNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKMPDLLAGQTPNVFSDRFAGGALMDLGI
HHHHHHHHHHHHHHHHCHHHHCCCCCHHHHCCCCCHHHCCCCCCHHHHHCCCCEEEHHHH
YPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSNLPCEIYT
HHHHHHHHHHCCCCCCEEEHHHCCCCCCCCCCEEEEECCEEEEEEECCCCCCCCCEEEEE
TDGTLTLNTIEHIRSAIFTDHQGNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWL
CCCEEEHHHHHHHHHHHHCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
YDAGSVHELLYTMRQTAGIRFEAEK
CCCCCHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQLEVFFK
CEEEEEEECCHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHC
SSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAA
CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEHHH
RNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKMPDLLAGQTPNVFSDRFAGGALMDLGI
HHHHHHHHHHHHHHHHCHHHHCCCCCHHHHCCCCCHHHCCCCCCHHHHHCCCCEEEHHHH
YPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSNLPCEIYT
HHHHHHHHHHCCCCCCEEEHHHCCCCCCCCCCEEEEECCEEEEEEECCCCCCCCCEEEEE
TDGTLTLNTIEHIRSAIFTDHQGNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWL
CCCEEEHHHHHHHHHHHHCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
YDAGSVHELLYTMRQTAGIRFEAEK
CCCCCHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]