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The map label for this gene is sdhB [H]

Identifier: 116516124

GI number: 116516124

Start: 102998

End: 103669

Strand: Reverse

Name: sdhB [H]

Synonym: SPD_0103

Alternate gene names: 116516124

Gene position: 103669-102998 (Counterclockwise)

Preceding gene: 116515849

Following gene: 116516525

Centisome position: 5.07

GC content: 41.67

Gene sequence:

>672_bases
ATGAAATCACTTCGTTTTCAATCTGTCTTTGATATCATCGGACCAGTTATGATTGGCCCATCTAGTAGCCATACCGCTGG
TGCTGTTCGTATTGGGAAGATTGTCTCTTCCATTTTTGATGATACTCCAACAGAAGTTGAATTCCAACTTTTTAACTCAT
TTGCCAAGACCTATCGTGGTCACGGAACAGACCTAGCCCTTGTTGCAGGTATTTTGGGAATGGATACAGATGATCCTGAA
ATTCCAAATAGTCTGGAAATTGCCCACAAGCGTGGTATCAAGATTGTCTGGACCATTCAGAAAGACAGCAATGCCCCTCA
CCCTAACACCACTAAAATTACTGTTAAAAATGCCCACAAGACCATCAGCGTGACTGGTATTTCTATCGGTGGAGGAAATA
TTCAGGTAACCGAACTCAATGGTTTTGCCGTCTCTCTCAATATGAATACACCGACTATCATCATCGTTCATCAAGATATT
CCAGGTATGATTGCCCTTGTTACAGAGGCGCTTTCCCGCTATGGTATCAATATCGCCCAGATGAATGTCACTCGTGAAAA
AGCTGGTGAAAAAGCCATTATGATTATCGAAGTTGACAGTCGCAACTGTGATGAGGCTATCGAAGAAATTCGAAAAATCC
CTCATCTCCACAATGTCAATTTCTTTAAATAG

Upstream 100 bases:

>100_bases
TATGCTATTTGAGGTATTAGAAAGGTTTTCATCCACAATTAAAGCCAAGCCCCTCATTCTTTGATATAATAGAGATAAGA
ATTTTTATAAGGGGAAACTG

Downstream 100 bases:

>100_bases
GAGGAAGCATGTTTTATTCTATCAAAGAATTGGTCGAGCAAGCAGATCTGGACTTTCAAGGAAATGTCGCAGAACTCATG
ATTACAACAGAGTTTGAATT

Product: L-serine dehydratase, iron-sulfur-dependent, beta subunit

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MKSLRFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFDDTPTEVEFQLFNSFAKTYRGHGTDLALVAGILGMDTDDPE
IPNSLEIAHKRGIKIVWTIQKDSNAPHPNTTKITVKNAHKTISVTGISIGGGNIQVTELNGFAVSLNMNTPTIIIVHQDI
PGMIALVTEALSRYGINIAQMNVTREKAGEKAIMIIEVDSRNCDEAIEEIRKIPHLHNVNFFK

Sequences:

>Translated_223_residues
MKSLRFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFDDTPTEVEFQLFNSFAKTYRGHGTDLALVAGILGMDTDDPE
IPNSLEIAHKRGIKIVWTIQKDSNAPHPNTTKITVKNAHKTISVTGISIGGGNIQVTELNGFAVSLNMNTPTIIIVHQDI
PGMIALVTEALSRYGINIAQMNVTREKAGEKAIMIIEVDSRNCDEAIEEIRKIPHLHNVNFFK
>Mature_223_residues
MKSLRFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFDDTPTEVEFQLFNSFAKTYRGHGTDLALVAGILGMDTDDPE
IPNSLEIAHKRGIKIVWTIQKDSNAPHPNTTKITVKNAHKTISVTGISIGGGNIQVTELNGFAVSLNMNTPTIIIVHQDI
PGMIALVTEALSRYGINIAQMNVTREKAGEKAIMIIEVDSRNCDEAIEEIRKIPHLHNVNFFK

Specific function: Deaminates Also Threonine, Particularly When It Is Present In High Concentration. [C]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002912
- InterPro:   IPR004643
- InterPro:   IPR005131 [H]

Pfam domain/function: PF01842 ACT; PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 24329; Mature: 24329

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLRFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFDDTPTEVEFQLFNSFAKTYRG
CCCCCHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
HGTDLALVAGILGMDTDDPEIPNSLEIAHKRGIKIVWTIQKDSNAPHPNTTKITVKNAHK
CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCCE
TISVTGISIGGGNIQVTELNGFAVSLNMNTPTIIIVHQDIPGMIALVTEALSRYGINIAQ
EEEEEEEEECCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCEEEE
MNVTREKAGEKAIMIIEVDSRNCDEAIEEIRKIPHLHNVNFFK
EEEEHHHCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKSLRFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFDDTPTEVEFQLFNSFAKTYRG
CCCCCHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
HGTDLALVAGILGMDTDDPEIPNSLEIAHKRGIKIVWTIQKDSNAPHPNTTKITVKNAHK
CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCCE
TISVTGISIGGGNIQVTELNGFAVSLNMNTPTIIIVHQDIPGMIALVTEALSRYGINIAQ
EEEEEEEEECCCEEEEEEECCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCEEEE
MNVTREKAGEKAIMIIEVDSRNCDEAIEEIRKIPHLHNVNFFK
EEEEHHHCCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]