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The map label for this gene is dnaD [H]

Identifier: 116516031

GI number: 116516031

Start: 1424441

End: 1425118

Strand: Reverse

Name: dnaD [H]

Synonym: SPD_1405

Alternate gene names: 116516031

Gene position: 1425118-1424441 (Counterclockwise)

Preceding gene: 116516883

Following gene: 116516798

Centisome position: 69.65

GC content: 43.07

Gene sequence:

>678_bases
ATGACATATTTAGACGCTTTTAAATCAGGTACCTTGGTTTTACCGAGTGCCCTGCTCTTGCATTTTAAGGAACTCTTTCC
TTCTAGCGACGATTTTCTGGTTTGGCAATTTTTCTATTTGCAAAATACGACAGGCTTAGAAGAAATGTCGCCAAGCCAGA
TTGCTGAAAGGATTGGCAAGGAAATTTCGGATGTCAACCAGTCCATTTCTAATCTGACGGAAAGGGGACTGCTCCAGTAT
CGTACTATCGAATTAAATGGCGAAATTGAATTGCTCTTTGATGCTAGTTTGGCCTTGGAACGTTTGGATGACCTGTTTGG
AGCAGTTCATTCAAGTTCAGACCAGCTAACATCTCAAAACCAGCTCAAGGATTTGGTGGAAACCTTCCAGCAGGAGTTGG
GACGATTGTTGACGCCTTTTGAGATTGAGGATTTGACCAAGACACTAAAGGAAGATGGAACCAGTGCTGACTTGATTAAG
GAGGCTCTTCGTGAAGCTGTTTTGAATGGAAAACCAAACTGGAAGTACATTCAGGCGATTTTGAGAAACTGGCGCCATGA
AGGAATCAAGAGTGTGGCTCAAATTGAGGCCAAGAGAGCAGAAAGAGAAGCAAGCAATCCTCAGTTGACACAGGTATCTG
CAGATTTCAGAAATGCCATGGATCTCTGGAAGGATTAA

Upstream 100 bases:

>100_bases
TCAGTAATTGGGTAAACCATGCGGTCTATCAGGAGACGCCTTTTGATTGGAGAAAGATAGAAGATGATGCATCTGCATAT
GGGTATTTATAAGAGGAATT

Downstream 100 bases:

>100_bases
TCCATGCAAGTAGGCTTGAAATCCGAGTAAGATTTGCAAGCTGTGTATAATTGTGATAGAATAAATAGAAAATAAATTGA
AAAAAGAGGTATGTGAAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTYLDAFKSGTLVLPSALLLHFKELFPSSDDFLVWQFFYLQNTTGLEEMSPSQIAERIGKEISDVNQSISNLTERGLLQY
RTIELNGEIELLFDASLALERLDDLFGAVHSSSDQLTSQNQLKDLVETFQQELGRLLTPFEIEDLTKTLKEDGTSADLIK
EALREAVLNGKPNWKYIQAILRNWRHEGIKSVAQIEAKRAEREASNPQLTQVSADFRNAMDLWKD

Sequences:

>Translated_225_residues
MTYLDAFKSGTLVLPSALLLHFKELFPSSDDFLVWQFFYLQNTTGLEEMSPSQIAERIGKEISDVNQSISNLTERGLLQY
RTIELNGEIELLFDASLALERLDDLFGAVHSSSDQLTSQNQLKDLVETFQQELGRLLTPFEIEDLTKTLKEDGTSADLIK
EALREAVLNGKPNWKYIQAILRNWRHEGIKSVAQIEAKRAEREASNPQLTQVSADFRNAMDLWKD
>Mature_224_residues
TYLDAFKSGTLVLPSALLLHFKELFPSSDDFLVWQFFYLQNTTGLEEMSPSQIAERIGKEISDVNQSISNLTERGLLQYR
TIELNGEIELLFDASLALERLDDLFGAVHSSSDQLTSQNQLKDLVETFQQELGRLLTPFEIEDLTKTLKEDGTSADLIKE
ALREAVLNGKPNWKYIQAILRNWRHEGIKSVAQIEAKRAEREASNPQLTQVSADFRNAMDLWKD

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 25639; Mature: 25508

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYLDAFKSGTLVLPSALLLHFKELFPSSDDFLVWQFFYLQNTTGLEEMSPSQIAERIGK
CCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHH
EISDVNQSISNLTERGLLQYRTIELNGEIELLFDASLALERLDDLFGAVHSSSDQLTSQN
HHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHH
QLKDLVETFQQELGRLLTPFEIEDLTKTLKEDGTSADLIKEALREAVLNGKPNWKYIQAI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
LRNWRHEGIKSVAQIEAKRAEREASNPQLTQVSADFRNAMDLWKD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TYLDAFKSGTLVLPSALLLHFKELFPSSDDFLVWQFFYLQNTTGLEEMSPSQIAERIGK
CCHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHH
EISDVNQSISNLTERGLLQYRTIELNGEIELLFDASLALERLDDLFGAVHSSSDQLTSQN
HHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHH
QLKDLVETFQQELGRLLTPFEIEDLTKTLKEDGTSADLIKEALREAVLNGKPNWKYIQAI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
LRNWRHEGIKSVAQIEAKRAEREASNPQLTQVSADFRNAMDLWKD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]