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The map label for this gene is patM [H]

Identifier: 116515947

GI number: 116515947

Start: 1311739

End: 1312539

Strand: Reverse

Name: patM [H]

Synonym: SPD_1290

Alternate gene names: 116515947

Gene position: 1312539-1311739 (Counterclockwise)

Preceding gene: 116515586

Following gene: 116516709

Centisome position: 64.15

GC content: 44.32

Gene sequence:

>801_bases
ATGAATGTTACAACGATTTTAGCATCAGATTGGTACCAAAACTTGATGCAATTGATTCCGGATGGCAAGCTGTTTAGCCT
ACGTTCGGTCTTTGATGGAATCCCTAGAATTGTCCAACAACTTCCAACAACAATTATGTTGACAATTGGTGGTGCCCTTT
TTGGCTTGGTTTTGGCGCTTCTTTTTGCCATTGTGAAGATCAATCGTGTCAAGATTTTATATCCCTTGCAGGCCTTCTTT
GTTAGTTTCTTAAAAGGGACACCGATTTTGGTGCAACTCATGTTGACCTACTACGGAATCCCTTTGGCTTTGAAAGCCCT
CAATCAGCAATGGGGAACTGGTCTCAATATCAATGCGATTCCAGCTGCAGCTTTTGCGATTGTCGCCTTTGCCTTTAATG
AGGCAGCTTATGCTAGTGAAACCATTCGTGCAGCCATTCTCTCAGTTAATCCTGGTGAGATTGAGGCGGCACGCAGTCTG
GGTATGACCCGAGCGCAAGTTTATCGACGAGTGATTATTCCTAATGCAGCGGTGGTAGCTACTCCAACCTTGATTAATTC
CCTCATCGGTTTGACCAAGGGAACATCTCTAGCTTTTAGTGCGGGTGTTGTGGAAGTCTTTGCCCAAGCTCAGATTCTAG
GTGGAGCTGATTATCGCTATTTTGAACGCTTCATCTCCGTTGCCCTTGTTTATTGGGTAGTCAATATCGGAATTGAAAGC
CTCGGTCGTTTCATCGAGAGAAAAATGGCTATTTCTGCACCTGATACAGTGCAAACAGATGTGAAAGGAGACCTTCGTTA
A

Upstream 100 bases:

>100_bases
AAACTAGTAGGTAGACAAAGTCTGTATCTGACCGTAGCAAATAATTTCATTGACGGCAGAAGCATGGTAGAATGAATCAT
TATCAGAAGAGGATGTTTTT

Downstream 100 bases:

>100_bases
TGATTAAGATTTCGAATTTAAGCAAATCCTTTTCAGGACAGACTGTCTTGGATCATCTGGACTTGGATATTCAAAAAGGG
GAAGTTGTAGCCTTGATTGG

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MNVTTILASDWYQNLMQLIPDGKLFSLRSVFDGIPRIVQQLPTTIMLTIGGALFGLVLALLFAIVKINRVKILYPLQAFF
VSFLKGTPILVQLMLTYYGIPLALKALNQQWGTGLNINAIPAAAFAIVAFAFNEAAYASETIRAAILSVNPGEIEAARSL
GMTRAQVYRRVIIPNAAVVATPTLINSLIGLTKGTSLAFSAGVVEVFAQAQILGGADYRYFERFISVALVYWVVNIGIES
LGRFIERKMAISAPDTVQTDVKGDLR

Sequences:

>Translated_266_residues
MNVTTILASDWYQNLMQLIPDGKLFSLRSVFDGIPRIVQQLPTTIMLTIGGALFGLVLALLFAIVKINRVKILYPLQAFF
VSFLKGTPILVQLMLTYYGIPLALKALNQQWGTGLNINAIPAAAFAIVAFAFNEAAYASETIRAAILSVNPGEIEAARSL
GMTRAQVYRRVIIPNAAVVATPTLINSLIGLTKGTSLAFSAGVVEVFAQAQILGGADYRYFERFISVALVYWVVNIGIES
LGRFIERKMAISAPDTVQTDVKGDLR
>Mature_266_residues
MNVTTILASDWYQNLMQLIPDGKLFSLRSVFDGIPRIVQQLPTTIMLTIGGALFGLVLALLFAIVKINRVKILYPLQAFF
VSFLKGTPILVQLMLTYYGIPLALKALNQQWGTGLNINAIPAAAFAIVAFAFNEAAYASETIRAAILSVNPGEIEAARSL
GMTRAQVYRRVIIPNAAVVATPTLINSLIGLTKGTSLAFSAGVVEVFAQAQILGGADYRYFERFISVALVYWVVNIGIES
LGRFIERKMAISAPDTVQTDVKGDLR

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=224, Percent_Identity=36.6071428571429, Blast_Score=150, Evalue=6e-38,
Organism=Escherichia coli, GI1787030, Length=227, Percent_Identity=30.3964757709251, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1788645, Length=211, Percent_Identity=34.1232227488152, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787086, Length=219, Percent_Identity=29.2237442922374, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788646, Length=222, Percent_Identity=28.3783783783784, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786874, Length=246, Percent_Identity=26.8292682926829, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1786873, Length=226, Percent_Identity=26.5486725663717, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI87082239, Length=208, Percent_Identity=26.4423076923077, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787087, Length=221, Percent_Identity=23.9819004524887, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI48994930, Length=193, Percent_Identity=29.5336787564767, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28932; Mature: 28932

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTTILASDWYQNLMQLIPDGKLFSLRSVFDGIPRIVQQLPTTIMLTIGGALFGLVLAL
CCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LFAIVKINRVKILYPLQAFFVSFLKGTPILVQLMLTYYGIPLALKALNQQWGTGLNINAI
HHHHHHHCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHH
PAAAFAIVAFAFNEAAYASETIRAAILSVNPGEIEAARSLGMTRAQVYRRVIIPNAAVVA
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHC
TPTLINSLIGLTKGTSLAFSAGVVEVFAQAQILGGADYRYFERFISVALVYWVVNIGIES
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LGRFIERKMAISAPDTVQTDVKGDLR
HHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNVTTILASDWYQNLMQLIPDGKLFSLRSVFDGIPRIVQQLPTTIMLTIGGALFGLVLAL
CCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LFAIVKINRVKILYPLQAFFVSFLKGTPILVQLMLTYYGIPLALKALNQQWGTGLNINAI
HHHHHHHCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHH
PAAAFAIVAFAFNEAAYASETIRAAILSVNPGEIEAARSLGMTRAQVYRRVIIPNAAVVA
HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHC
TPTLINSLIGLTKGTSLAFSAGVVEVFAQAQILGGADYRYFERFISVALVYWVVNIGIES
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
LGRFIERKMAISAPDTVQTDVKGDLR
HHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA