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The map label for this gene is lytC [H]

Identifier: 116515853

GI number: 116515853

Start: 1422042

End: 1423514

Strand: Reverse

Name: lytC [H]

Synonym: SPD_1403

Alternate gene names: 116515853

Gene position: 1423514-1422042 (Counterclockwise)

Preceding gene: 116516798

Following gene: 116515815

Centisome position: 69.57

GC content: 39.31

Gene sequence:

>1473_bases
TTGAAAATAAAAATTGGATTAGCAAGTATCTGTTTACTAGGCTTGGCAACTAGTCATGTCGCTGCAAATGAAACTGAAGT
AGCAAAAACTTCGCAGGATACAACGACAGCTTCAAGTAGTTCAGAGCAAAATCAGTCTTCTAATAAAACGCAAACGAGCG
CAGAAGTACAGACTAATGCTGCTGCCTACTGGGATGGGGATTATTATGTAAAGGATGATGGTTCTAAAGCTCAAAGTGAA
TGGATTTTTGACAACTACTATAAGGCTTGGTTTTATATTAATTCAGATGGTCGTTACTCGCAGAATGAATGGCATGGAAA
TTACTACCTGAAATCAGGTGGATATATGGCCCAAAACGAGTGGATCTATGACAGTAATTACAAGAGTTGGTTTTATCTCA
AGTCAGATGGGGCTTATGCTCATCAAGAATGGCAATTGATTGGAAATAAGTGGTACTACTTCAAGAAGTGGGGTTACATG
GCTAAAAGCCAATGGCAAGGAAGTTATTTCTTGAATGGTCAAGGAGCTATGATACAAAATGAATGGCTCTATGATCCAGC
TTATTCTGCTTATTTTTATCTAAAATCCGATGGAACTTATGCTAACCAAGAGTGGCAAAAAGTGGGCGGCAAATGGTACT
ATTTCAAGAAGTGGGGCTATATGGCTCGGAATGAGTGGCAAGGCAACTACTATTTGACTGGAAGTGGTGCCATGGCGACT
GACGAAGTGATTATGGATGGTGCTCGCTATATCTTTGCGGCCTCTGGTGAGCTCAAAGAAAAGAAAGATTTGAATGTCGG
CTGGGTTCACAGAGATGGTAAACGCTATTTCTTTAATAATAGAGAAGAACAAGTGGGAACCGAACATGCTAAGAAAATCA
TTGATATTAGTGAGCACAATGGTCGTATCAATGATTGGAAAAAGGTTATTGATGAGAACGAGGTGGATGGTGTCATTGTT
CGTCTAGGTTATAGCGGTAAAGAAGACAAGGAATTGGCGCATAACATTAAGGAGTTAAACCGTCTGGGAATTCCTTATGG
TGTCTATCTCTATACCTATGCTGAAAATGAGACCGATGCTGAGAATGACGCTAAACAGACCATTGAACTTATAAAGAAAT
ACAATATGAACCTGTCTTACCCTATCTATTATGATGTTGAGAACTGGGAATATGTAAATAAGAGCAAGAGAGCTCCAAGT
GATACAGACACTTGGGTTAAAATCATCAACAAGTACATGGACACGATGAAGCAGGCGGGTTATCAAAATGTATATGTCTA
TAGCTATCGTAGTTTATTACAGACGCGTTTAAAACACCCAGATATTTTAAAACATGTAAACTGGGTAGCGGCCTATACGA
ATGCTTTAGAATGGGAAAACCCTTATTATTCAGGAGAAAAAGGTTGGCAATATACCTCTTCTGAATACATGAAAGGAATC
CAAGGGCGCGTAGATGTCAGCGTTTGGTATTAA

Upstream 100 bases:

>100_bases
TTCTTGGCTTTGCTTGACTTTGTAAAATAATCAGTAAGTAGCAAAAGCTAGGTGGAACAGCATTCAGATGTCTGTTACAT
TTTTTATAGGAGAGGAAAGA

Downstream 100 bases:

>100_bases
GCGATGATTTGAAAGAGGGATGTGATAGTAGCACCCTCTTTTTCTTTGTTTTATGATAGTTCATCCTCGAGTAAATTCAA
GATCTTGCTCGGAAATGAAG

Product: 1,4-beta-N-acetylmuramidase

Products: NA

Alternate protein names: Murein hydrolase [H]

Number of amino acids: Translated: 490; Mature: 490

Protein sequence:

>490_residues
MKIKIGLASICLLGLATSHVAANETEVAKTSQDTTTASSSSEQNQSSNKTQTSAEVQTNAAAYWDGDYYVKDDGSKAQSE
WIFDNYYKAWFYINSDGRYSQNEWHGNYYLKSGGYMAQNEWIYDSNYKSWFYLKSDGAYAHQEWQLIGNKWYYFKKWGYM
AKSQWQGSYFLNGQGAMIQNEWLYDPAYSAYFYLKSDGTYANQEWQKVGGKWYYFKKWGYMARNEWQGNYYLTGSGAMAT
DEVIMDGARYIFAASGELKEKKDLNVGWVHRDGKRYFFNNREEQVGTEHAKKIIDISEHNGRINDWKKVIDENEVDGVIV
RLGYSGKEDKELAHNIKELNRLGIPYGVYLYTYAENETDAENDAKQTIELIKKYNMNLSYPIYYDVENWEYVNKSKRAPS
DTDTWVKIINKYMDTMKQAGYQNVYVYSYRSLLQTRLKHPDILKHVNWVAAYTNALEWENPYYSGEKGWQYTSSEYMKGI
QGRVDVSVWY

Sequences:

>Translated_490_residues
MKIKIGLASICLLGLATSHVAANETEVAKTSQDTTTASSSSEQNQSSNKTQTSAEVQTNAAAYWDGDYYVKDDGSKAQSE
WIFDNYYKAWFYINSDGRYSQNEWHGNYYLKSGGYMAQNEWIYDSNYKSWFYLKSDGAYAHQEWQLIGNKWYYFKKWGYM
AKSQWQGSYFLNGQGAMIQNEWLYDPAYSAYFYLKSDGTYANQEWQKVGGKWYYFKKWGYMARNEWQGNYYLTGSGAMAT
DEVIMDGARYIFAASGELKEKKDLNVGWVHRDGKRYFFNNREEQVGTEHAKKIIDISEHNGRINDWKKVIDENEVDGVIV
RLGYSGKEDKELAHNIKELNRLGIPYGVYLYTYAENETDAENDAKQTIELIKKYNMNLSYPIYYDVENWEYVNKSKRAPS
DTDTWVKIINKYMDTMKQAGYQNVYVYSYRSLLQTRLKHPDILKHVNWVAAYTNALEWENPYYSGEKGWQYTSSEYMKGI
QGRVDVSVWY
>Mature_490_residues
MKIKIGLASICLLGLATSHVAANETEVAKTSQDTTTASSSSEQNQSSNKTQTSAEVQTNAAAYWDGDYYVKDDGSKAQSE
WIFDNYYKAWFYINSDGRYSQNEWHGNYYLKSGGYMAQNEWIYDSNYKSWFYLKSDGAYAHQEWQLIGNKWYYFKKWGYM
AKSQWQGSYFLNGQGAMIQNEWLYDPAYSAYFYLKSDGTYANQEWQKVGGKWYYFKKWGYMARNEWQGNYYLTGSGAMAT
DEVIMDGARYIFAASGELKEKKDLNVGWVHRDGKRYFFNNREEQVGTEHAKKIIDISEHNGRINDWKKVIDENEVDGVIV
RLGYSGKEDKELAHNIKELNRLGIPYGVYLYTYAENETDAENDAKQTIELIKKYNMNLSYPIYYDVENWEYVNKSKRAPS
DTDTWVKIINKYMDTMKQAGYQNVYVYSYRSLLQTRLKHPDILKHVNWVAAYTNALEWENPYYSGEKGWQYTSSEYMKGI
QGRVDVSVWY

Specific function: Plays an important role in cell wall degradation and cell separation [H]

COG id: COG5263

COG function: function code R; FOG: Glucan-binding domain (YG repeat)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 13 cell wall-binding repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018337
- InterPro:   IPR013338
- InterPro:   IPR002901 [H]

Pfam domain/function: PF01473 CW_binding_1; PF01832 Glucosaminidase [H]

EC number: =3.2.1.96 [H]

Molecular weight: Translated: 57403; Mature: 57403

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKIGLASICLLGLATSHVAANETEVAKTSQDTTTASSSSEQNQSSNKTQTSAEVQTNA
CEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCE
AAYWDGDYYVKDDGSKAQSEWIFDNYYKAWFYINSDGRYSQNEWHGNYYLKSGGYMAQNE
EEEECCEEEECCCCCCCHHCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCEEECCC
WIYDSNYKSWFYLKSDGAYAHQEWQLIGNKWYYFKKWGYMAKSQWQGSYFLNGQGAMIQN
EEEECCCCEEEEEECCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCEEEECCCCCEEEC
EWLYDPAYSAYFYLKSDGTYANQEWQKVGGKWYYFKKWGYMARNEWQGNYYLTGSGAMAT
CEEECCCCEEEEEEECCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCH
DEVIMDGARYIFAASGELKEKKDLNVGWVHRDGKRYFFNNREEQVGTEHAKKIIDISEHN
HHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEECCCCHHHHCHHHHHHEEEECCCC
GRINDWKKVIDENEVDGVIVRLGYSGKEDKELAHNIKELNRLGIPYGVYLYTYAENETDA
CCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCC
ENDAKQTIELIKKYNMNLSYPIYYDVENWEYVNKSKRAPSDTDTWVKIINKYMDTMKQAG
CHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
YQNVYVYSYRSLLQTRLKHPDILKHVNWVAAYTNALEWENPYYSGEKGWQYTSSEYMKGI
CCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECHHHHHHCC
QGRVDVSVWY
CCEEEEEEEC
>Mature Secondary Structure
MKIKIGLASICLLGLATSHVAANETEVAKTSQDTTTASSSSEQNQSSNKTQTSAEVQTNA
CEEEECHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCE
AAYWDGDYYVKDDGSKAQSEWIFDNYYKAWFYINSDGRYSQNEWHGNYYLKSGGYMAQNE
EEEECCEEEECCCCCCCHHCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCEEECCC
WIYDSNYKSWFYLKSDGAYAHQEWQLIGNKWYYFKKWGYMAKSQWQGSYFLNGQGAMIQN
EEEECCCCEEEEEECCCCCCCEEEEEECCEEEEEEECCCCCCCCCCCEEEECCCCCEEEC
EWLYDPAYSAYFYLKSDGTYANQEWQKVGGKWYYFKKWGYMARNEWQGNYYLTGSGAMAT
CEEECCCCEEEEEEECCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCH
DEVIMDGARYIFAASGELKEKKDLNVGWVHRDGKRYFFNNREEQVGTEHAKKIIDISEHN
HHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEECCCCHHHHCHHHHHHEEEECCCC
GRINDWKKVIDENEVDGVIVRLGYSGKEDKELAHNIKELNRLGIPYGVYLYTYAENETDA
CCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCC
ENDAKQTIELIKKYNMNLSYPIYYDVENWEYVNKSKRAPSDTDTWVKIINKYMDTMKQAG
CHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
YQNVYVYSYRSLLQTRLKHPDILKHVNWVAAYTNALEWENPYYSGEKGWQYTSSEYMKGI
CCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECHHHHHHCC
QGRVDVSVWY
CCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11463916 [H]